mRNA_H-fluviatilis_contig102.458.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102.458.1
Unique NamemRNA_H-fluviatilis_contig102.458.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102.458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102contigH-fluviatilis_contig102:5198..5652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size456
Cds size348
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.239421-UTR-H-fluviatilis_contig102:5197..53041622929053.239421-UTR-H-fluviatilis_contig102:5197..5304Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 5198..5304 +
1691135164.9784622-UTR-H-fluviatilis_contig102:5197..53041691135164.9784622-UTR-H-fluviatilis_contig102:5197..5304Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 5198..5304 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929053.2740428-CDS-H-fluviatilis_contig102:5304..56521622929053.2740428-CDS-H-fluviatilis_contig102:5304..5652Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 5305..5652 +
1691135164.9867003-CDS-H-fluviatilis_contig102:5304..56521691135164.9867003-CDS-H-fluviatilis_contig102:5304..5652Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 5305..5652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102.458.1prot_H-fluviatilis_contig102.458.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102 5305..5652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102.458.1

>prot_H-fluviatilis_contig102.458.1 ID=prot_H-fluviatilis_contig102.458.1|Name=mRNA_H-fluviatilis_contig102.458.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=116bp
MQRLGAKISRHESMYRSIHLVTESNISIVVFDACMEAREEELEENGCDVS
ANTRGDPHEARKQNVIPSRKFQRASKLIFPIFVVWCAWGRDGWFSKCAAL
GTGASGELYARHSALP
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mRNA from alignment at H-fluviatilis_contig102:5198..5652+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102.458.1 ID=mRNA_H-fluviatilis_contig102.458.1|Name=mRNA_H-fluviatilis_contig102.458.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=455bp|location=Sequence derived from alignment at H-fluviatilis_contig102:5198..5652+ (Heribaudiella fluviatilis SAG_13_90)
TGTTCAGGTACCCCGTCTCCGACCTTTCCCTGCTGGGGCAGCTACATACA
TACTCCTACCACACGAACGGCATATCCCACCCTTCAGCCGGCGTATGAAG
ATGATGTATGCAGAGACTCGGTGCAAAAATCTCGCGTCATGAATCTATGT
ATCGTTCGATCCACTTGGTGACTGAGTCCAACATTTCCATCGTCGTCTTC
GATGCGTGTATGGAGGCTAGAGAAGAAGAGCTGGAGGAAAACGGTTGCGA
CGTTTCTGCCAATACTCGTGGTGATCCACACGAAGCTCGAAAGCAAAATG
TGATCCCGAGCAGAAAATTCCAACGTGCCTCAAAACTCATTTTCCCAATT
TTCGTTGTCTGGTGCGCCTGGGGCAGGGATGGGTGGTTTTCAAAGTGCGC
GGCGTTGGGGACGGGCGCATCCGGAGAGCTATATGCGAGGCATTCTGCAT
TGCCT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102:5198..5652+

>mRNA_H-fluviatilis_contig102.458.1 ID=mRNA_H-fluviatilis_contig102.458.1|Name=mRNA_H-fluviatilis_contig102.458.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=696bp|location=Sequence derived from alignment at H-fluviatilis_contig102:5198..5652+ (Heribaudiella fluviatilis SAG_13_90)
ATGCAGAGACTCGGTGCAAAAATCTCGCGTCATGAATCTATGTATCGTTC
GATCCACTTGGTGACTGAGTCCAACATTTCCATCGTCGTCTTCGATGCGT
GTATGGAGGCTAGAGAAGAAGAGCTGGAGGAAAACGGTTGCGACGTTTCT
GCCAATACTCGTGGTGATCCACACGAAGCTCGAAAGCAAAATGTGATCCC
GAGCAGAAAATTCCAACGTGCCTCAAAACTCATTTTCCCAATTTTCGTTG
TCTGGTGCGCCTGGGGCAGGGATGGGTGGTTTTCAAAGTGCGCGGCGTTG
GGGACGGGCGCATCCGGAGAGCTATATGCGAGGCATTCTGCATTGCCTAT
GCAGAGACTCGGTGCAAAAATCTCGCGTCATGAATCTATGTATCGTTCGA
TCCACTTGGTGACTGAGTCCAACATTTCCATCGTCGTCTTCGATGCGTGT
ATGGAGGCTAGAGAAGAAGAGCTGGAGGAAAACGGTTGCGACGTTTCTGC
CAATACTCGTGGTGATCCACACGAAGCTCGAAAGCAAAATGTGATCCCGA
GCAGAAAATTCCAACGTGCCTCAAAACTCATTTTCCCAATTTTCGTTGTC
TGGTGCGCCTGGGGCAGGGATGGGTGGTTTTCAAAGTGCGCGGCGTTGGG
GACGGGCGCATCCGGAGAGCTATATGCGAGGCATTCTGCATTGCCT
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