mRNA_H-fluviatilis_contig102.457.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig102.457.1
Unique NamemRNA_H-fluviatilis_contig102.457.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig102.457.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig102contigH-fluviatilis_contig102:552..1339 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size753
Cds size456
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig102.457.1prot_H-fluviatilis_contig102.457.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig102 702..1192 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.703962-UTR-H-fluviatilis_contig102:551..7011622929052.703962-UTR-H-fluviatilis_contig102:551..701Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 552..701 +
1691135164.6524708-UTR-H-fluviatilis_contig102:551..7011691135164.6524708-UTR-H-fluviatilis_contig102:551..701Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 552..701 +
1622929052.7515006-UTR-H-fluviatilis_contig102:1192..13391622929052.7515006-UTR-H-fluviatilis_contig102:1192..1339Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 1193..1339 +
1691135164.6924148-UTR-H-fluviatilis_contig102:1192..13391691135164.6924148-UTR-H-fluviatilis_contig102:1192..1339Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig102 1193..1339 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.7233033-CDS-H-fluviatilis_contig102:701..10441622929052.7233033-CDS-H-fluviatilis_contig102:701..1044Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 702..1044 +
1691135164.6709492-CDS-H-fluviatilis_contig102:701..10441691135164.6709492-CDS-H-fluviatilis_contig102:701..1044Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 702..1044 +
1622929052.736918-CDS-H-fluviatilis_contig102:1079..11921622929052.736918-CDS-H-fluviatilis_contig102:1079..1192Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 1080..1192 +
1691135164.682134-CDS-H-fluviatilis_contig102:1079..11921691135164.682134-CDS-H-fluviatilis_contig102:1079..1192Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig102 1080..1192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig102.457.1

>prot_H-fluviatilis_contig102.457.1 ID=prot_H-fluviatilis_contig102.457.1|Name=mRNA_H-fluviatilis_contig102.457.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=152bp
MLTIDESKLAARKQRFLQSEKDRQGQLRKETRMLSIHSCEERTKGSPGWE
QANDNDVADWLCYLDSQEKVNTVVHAGACPCIGTTLLIAWHIGERQDMYA
EVLICRNPWATDQVAWSCRHTAPLLRQSRSGQEFLCNRRYPYCASPSRAG
G*
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mRNA from alignment at H-fluviatilis_contig102:552..1339+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig102.457.1 ID=mRNA_H-fluviatilis_contig102.457.1|Name=mRNA_H-fluviatilis_contig102.457.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=788bp|location=Sequence derived from alignment at H-fluviatilis_contig102:552..1339+ (Heribaudiella fluviatilis SAG_13_90)
GCACCGATCGGGGCTACGAGGGCAGCACACCGACTCGTGCGGGTGCTGTG
CATTGCGTGTTTCGCAGAGAACGATGAATCGTTTCGGTGTTGCCAGAATT
GCCGGGTACAGGTTGAGCACAATGCGCCGGCGGGTAGACAACCGGGGGCA
ATGTTGACCATAGACGAGAGCAAGCTCGCGGCGCGGAAACAGCGATTTCT
CCAATCCGAGAAAGATCGCCAGGGGCAACTGCGAAAAGAAACGCGGATGC
TTTCGATACATTCCTGCGAAGAGCGAACGAAAGGTTCCCCAGGGTGGGAA
CAAGCGAACGATAATGATGTGGCGGATTGGTTGTGTTACTTGGATTCGCA
AGAGAAGGTTAACACGGTGGTACACGCGGGGGCGTGCCCTTGCATAGGTA
CGACATTGTTGATTGCGTGGCACATTGGCGAAAGGCAAGATATGTACGCG
GAAGTGCTTATATGCCGAAATCCTTGGGCGACGGACCAAGTGGGCGCCCG
AAGTACAGATAGGAAATCCAGCGAGTAGCGTGGTCGTGCAGGCATACAGC
TCCTTTACTACGGCAGAGCAGAAGCGGGCAGGAGTTCCTGTGCAACAGGC
GCTACCCTTACTGCGCCTCGCCGTCACGGGCTGGTGGCTAGTATGAGGCG
CCGGCTGGGTGCGTTGACTGTCTTGGAGGGCGTGGCAGTGATGCGGGATA
TTGCGATGTTCTTGTGTGGGATGGTTTTCCGGTCGAAGGGGCTTCGACTT
GACCCTCTCGATGCGGGCGAACATTTTGCGGCTCCCGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig102:552..1339+

>mRNA_H-fluviatilis_contig102.457.1 ID=mRNA_H-fluviatilis_contig102.457.1|Name=mRNA_H-fluviatilis_contig102.457.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=912bp|location=Sequence derived from alignment at H-fluviatilis_contig102:552..1339+ (Heribaudiella fluviatilis SAG_13_90)
ATGTTGACCATAGACGAGAGCAAGCTCGCGGCGCGGAAACAGCGATTTCT
CCAATCCGAGAAAGATCGCCAGGGGCAACTGCGAAAAGAAACGCGGATGC
TTTCGATACATTCCTGCGAAGAGCGAACGAAAGGTTCCCCAGGGTGGGAA
CAAGCGAACGATAATGATGTGGCGGATTGGTTGTGTTACTTGGATTCGCA
AGAGAAGGTTAACACGGTGGTACACGCGGGGGCGTGCCCTTGCATAGGTA
CGACATTGTTGATTGCGTGGCACATTGGCGAAAGGCAAGATATGTACGCG
GAAGTGCTTATATGCCGAAATCCTTGGGCGACGGACCAAGTGGATGTTGA
CCATAGACGAGAGCAAGCTCGCGGCGCGGAAACAGCGATTTCTCCAATCC
GAGAAAGATCGCCAGGGGCAACTGCGAAAAGAAACGCGGATGCTTTCGAT
ACATTCCTGCGAAGAGCGAACGAAAGGTTCCCCAGGGTGGGAACAAGCGA
ACGATAATGATGTGGCGGATTGGTTGTGTTACTTGGATTCGCAAGAGAAG
GTTAACACGGTGGTACACGCGGGGGCGTGCCCTTGCATAGGTACGACATT
GTTGATTGCGTGGCACATTGGCGAAAGGCAAGATATGTACGCGGAAGTGC
TTATATGCCGAAATCCTTGGGCGACGGACCAAGTGGCGTGGTCGTGCAGG
CATACAGCTCCTTTACTACGGCAGAGCAGAAGCGGGCAGGAGTTCCTGTG
CAACAGGCGCTACCCTTACTGCGCCTCGCCGTCACGGGCTGGTGGCTAGC
GTGGTCGTGCAGGCATACAGCTCCTTTACTACGGCAGAGCAGAAGCGGGC
AGGAGTTCCTGTGCAACAGGCGCTACCCTTACTGCGCCTCGCCGTCACGG
GCTGGTGGCTAG
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