mRNA_H-fluviatilis_contig101996.455.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101996.455.1
Unique NamemRNA_H-fluviatilis_contig101996.455.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101996.455.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101996contigH-fluviatilis_contig101996:39..312 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size213
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.5894587-CDS-H-fluviatilis_contig101996:39..1741622929052.5894587-CDS-H-fluviatilis_contig101996:39..174Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101996 40..174 -
1691135164.626811-CDS-H-fluviatilis_contig101996:39..1741691135164.626811-CDS-H-fluviatilis_contig101996:39..174Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101996 40..174 -
1622929052.6125867-CDS-H-fluviatilis_contig101996:237..3121622929052.6125867-CDS-H-fluviatilis_contig101996:237..312Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101996 238..312 -
1691135164.6341534-CDS-H-fluviatilis_contig101996:237..3121691135164.6341534-CDS-H-fluviatilis_contig101996:237..312Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101996 238..312 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101996.455.1prot_H-fluviatilis_contig101996.455.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101996 40..312 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101996.455.1

>prot_H-fluviatilis_contig101996.455.1 ID=prot_H-fluviatilis_contig101996.455.1|Name=mRNA_H-fluviatilis_contig101996.455.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=70bp
RSGSLRSLNVVVGFWTLSEELTPLLTRGVLEELFLDSHDGDVVSSVVKTL
KSHPGRLRVLSIDWQQLKLV
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mRNA from alignment at H-fluviatilis_contig101996:39..312-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101996.455.1 ID=mRNA_H-fluviatilis_contig101996.455.1|Name=mRNA_H-fluviatilis_contig101996.455.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=274bp|location=Sequence derived from alignment at H-fluviatilis_contig101996:39..312- (Heribaudiella fluviatilis SAG_13_90)
CGGAGCGGTTCCCTTCGTTCACTGAATGTCGTCGTCGGTTTTTGGACGTT
ATCTGAGGAGCTCACTCCCCTTCTGGTATGTTGGTCACAGCTGAAGTGGT
TGCATTCTGGCTGTGTGGCTGCGACTTGACTCGCTCAGACCCGCGGCGTG
TTGGAAGAGCTCTTTCTTGACAGCCATGATGGTGATGTGGTCTCGAGCGT
GGTCAAGACGCTGAAGAGCCATCCGGGTCGCCTGCGCGTGCTAAGCATCG
ATTGGCAACAACTGAAACTGGTGC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101996:39..312-

>mRNA_H-fluviatilis_contig101996.455.1 ID=mRNA_H-fluviatilis_contig101996.455.1|Name=mRNA_H-fluviatilis_contig101996.455.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=420bp|location=Sequence derived from alignment at H-fluviatilis_contig101996:39..312- (Heribaudiella fluviatilis SAG_13_90)
CGGAGCGGTTCCCTTCGTTCACTGAATGTCGTCGTCGGTTTTTGGACGTT
ATCTGAGGAGCTCACTCCCCTTCTGCGGAGCGGTTCCCTTCGTTCACTGA
ATGTCGTCGTCGGTTTTTGGACGTTATCTGAGGAGCTCACTCCCCTTCTG
ACCCGCGGCGTGTTGGAAGAGCTCTTTCTTGACAGCCATGATGGTGATGT
GGTCTCGAGCGTGGTCAAGACGCTGAAGAGCCATCCGGGTCGCCTGCGCG
TGCTAAGCATCGATTGGCAACAACTGAAACTGGTGACCCGCGGCGTGTTG
GAAGAGCTCTTTCTTGACAGCCATGATGGTGATGTGGTCTCGAGCGTGGT
CAAGACGCTGAAGAGCCATCCGGGTCGCCTGCGCGTGCTAAGCATCGATT
GGCAACAACTGAAACTGGTG
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