mRNA_H-fluviatilis_contig10196.451.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10196.451.1
Unique NamemRNA_H-fluviatilis_contig10196.451.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig10196.451.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 4.540e-9
Identity = 37/84 (44.05%), Postives = 50/84 (59.52%), Query Frame = 2 
Query:  461 VCGFCGRKRLCRSSNTPATKKGTAKVLSSCRFAPRADMREEEVSLNLNTARKSTKSTLCTNLPMVCKFYGPAEYIWMYGMGDHV 712
            VCGFCG    CRS+      +    V S+C  APR+D R+E V+LNL++AR  + ++ CTN+ + C       YIW YGM DHV
Sbjct: 1091 VCGFCGGVG-CRSTIHDPPGEARPLVHSTCPSAPRSDARQEAVALNLSSARADSDTSPCTNMVLKCFLCSQDNYIWNYGMFDHV 1173
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10196.451.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6M3_9PHAE4.540e-944.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10196contigH-fluviatilis_contig10196:5769..7207 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1439
Cds size1038
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10196.451.1prot_H-fluviatilis_contig10196.451.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10196 6100..7137 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.144763-UTR-H-fluviatilis_contig10196:5768..60991622929052.144763-UTR-H-fluviatilis_contig10196:5768..6099Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10196 5769..6099 +
1691135164.4495363-UTR-H-fluviatilis_contig10196:5768..60991691135164.4495363-UTR-H-fluviatilis_contig10196:5768..6099Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10196 5769..6099 +
1622929052.1752925-UTR-H-fluviatilis_contig10196:7137..72071622929052.1752925-UTR-H-fluviatilis_contig10196:7137..7207Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10196 7138..7207 +
1691135164.4684212-UTR-H-fluviatilis_contig10196:7137..72071691135164.4684212-UTR-H-fluviatilis_contig10196:7137..7207Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10196 7138..7207 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.1595325-CDS-H-fluviatilis_contig10196:6099..71371622929052.1595325-CDS-H-fluviatilis_contig10196:6099..7137Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10196 6100..7137 +
1691135164.4591653-CDS-H-fluviatilis_contig10196:6099..71371691135164.4591653-CDS-H-fluviatilis_contig10196:6099..7137Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10196 6100..7137 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10196.451.1

>prot_H-fluviatilis_contig10196.451.1 ID=prot_H-fluviatilis_contig10196.451.1|Name=mRNA_H-fluviatilis_contig10196.451.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=346bp
MRRMGEGHEYVSCTICHEHIKRKALRQDVGGHILERAYLQTRDVCGFCGR
KRLCRSSNTPATKKGTAKVLSSCRFAPRADMREEEVSLNLNTARKSTKST
LCTNLPMVCKFYGPAEYIWMYGMGDHVGTHHAHMSSLRTSDEDALAFVKE
YTERQDEKDAVLAFLRSYTRNPSERTGRPRKVGATRVDTSASQQREGGQR
AEKETDEEMDDPDREGAEERDSDHEGSDDSEENEEQEDDGDDSDKEDEEE
QDNIHDIDGDKEGSKEQPEENQGEEDDTGNGAGRGAGGGRNKRSRSLSKD
SHEGSSTNSAPRVDIQQSRAVSTVPVVVSQRGRLMLPRKRHTCEE*
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mRNA from alignment at H-fluviatilis_contig10196:5769..7207+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10196.451.1 ID=mRNA_H-fluviatilis_contig10196.451.1|Name=mRNA_H-fluviatilis_contig10196.451.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1439bp|location=Sequence derived from alignment at H-fluviatilis_contig10196:5769..7207+ (Heribaudiella fluviatilis SAG_13_90)
GTTCAGGTGGTTGCACCGCAGCCCCCGCAAAGCGAAGAGATAGTGTGGGA
ATGGGATCTGAAGGAGCGCCAGGGACTGTACCGTGATGCTGACACGTTCT
CCCTGGAGTTCATTAATCCACTCAACCCTGGCATGAATGCTGCACAGAGC
ACTTTCAGGTTTACGCACGAAGAGCTGAAGCGGCTAGCGGAAACAATCAC
AATCCTCGTGGACGAACTGAGCGGCTGGAGCGACCTTCCGACGCAGCCTT
CATATCCACCTGGAAATGCCAACCCAATGCCGCTTCACCCTGATTTGATG
TACGCAATCGCTTCAGACGACGCTGCGTCGAATGCGGCGGATGGGGGAGG
GGCACGAGTATGTGTCGTGTACCATCTGCCACGAGCACATAAAGAGGAAG
GCGCTACGCCAGGACGTTGGCGGCCATATCCTTGAACGTGCCTACCTACA
GACAAGGGATGTGTGTGGCTTCTGCGGTAGGAAGAGACTGTGCCGTTCTT
CCAACACCCCGGCCACTAAGAAAGGGACTGCGAAGGTCTTGTCGTCTTGC
CGCTTCGCGCCGAGAGCAGATATGCGGGAGGAGGAAGTCTCTCTCAATCT
GAATACCGCGAGAAAGTCGACGAAGAGCACACTATGCACCAATTTGCCCA
TGGTGTGCAAGTTTTACGGGCCGGCAGAGTACATCTGGATGTACGGCATG
GGGGACCACGTCGGGACGCATCACGCGCATATGTCCAGTCTTCGGACAAG
CGACGAAGATGCTCTGGCCTTCGTCAAGGAATACACCGAACGCCAGGACG
AAAAGGACGCAGTGCTCGCTTTCCTGCGATCGTATACCCGAAACCCGAGC
GAGAGGACTGGCAGGCCACGAAAGGTTGGGGCAACAAGGGTGGATACGTC
AGCGAGCCAACAGCGTGAGGGGGGGCAGCGAGCCGAGAAGGAGACCGACG
AGGAAATGGACGACCCAGATAGGGAAGGCGCTGAGGAGAGGGACAGCGAC
CACGAGGGCAGCGACGACAGCGAGGAGAATGAAGAACAGGAAGACGACGG
CGATGACAGCGACAAGGAGGATGAAGAAGAGCAAGACAATATCCATGACA
TTGATGGGGATAAAGAGGGCTCCAAAGAACAACCGGAAGAGAATCAGGGC
GAAGAGGACGACACCGGAAACGGGGCCGGCAGGGGTGCTGGTGGGGGGCG
CAACAAGCGCAGTAGATCCTTGTCGAAAGACAGCCACGAAGGCAGCAGTA
CAAACAGCGCACCCCGAGTGGACATACAGCAGTCAAGGGCGGTATCTACT
GTCCCTGTCGTCGTAAGCCAGCGCGGGCGTTTGATGCTTCCAAGAAAACG
ACACACCTGCGAGGAGTGACGTACGCGCACTCAGTAACATTCGCGATTCG
TAGCTCCAGAGCTACGAACTTAGTAGCCAAACTGGGTCC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10196:5769..7207+

>mRNA_H-fluviatilis_contig10196.451.1 ID=mRNA_H-fluviatilis_contig10196.451.1|Name=mRNA_H-fluviatilis_contig10196.451.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2076bp|location=Sequence derived from alignment at H-fluviatilis_contig10196:5769..7207+ (Heribaudiella fluviatilis SAG_13_90)
ATGCGGCGGATGGGGGAGGGGCACGAGTATGTGTCGTGTACCATCTGCCA
CGAGCACATAAAGAGGAAGGCGCTACGCCAGGACGTTGGCGGCCATATCC
TTGAACGTGCCTACCTACAGACAAGGGATGTGTGTGGCTTCTGCGGTAGG
AAGAGACTGTGCCGTTCTTCCAACACCCCGGCCACTAAGAAAGGGACTGC
GAAGGTCTTGTCGTCTTGCCGCTTCGCGCCGAGAGCAGATATGCGGGAGG
AGGAAGTCTCTCTCAATCTGAATACCGCGAGAAAGTCGACGAAGAGCACA
CTATGCACCAATTTGCCCATGGTGTGCAAGTTTTACGGGCCGGCAGAGTA
CATCTGGATGTACGGCATGGGGGACCACGTCGGGACGCATCACGCGCATA
TGTCCAGTCTTCGGACAAGCGACGAAGATGCTCTGGCCTTCGTCAAGGAA
TACACCGAACGCCAGGACGAAAAGGACGCAGTGCTCGCTTTCCTGCGATC
GTATACCCGAAACCCGAGCGAGAGGACTGGCAGGCCACGAAAGGTTGGGG
CAACAAGGGTGGATACGTCAGCGAGCCAACAGCGTGAGGGGGGGCAGCGA
GCCGAGAAGGAGACCGACGAGGAAATGGACGACCCAGATAGGGAAGGCGC
TGAGGAGAGGGACAGCGACCACGAGGGCAGCGACGACAGCGAGGAGAATG
AAGAACAGGAAGACGACGGCGATGACAGCGACAAGGAGGATGAAGAAGAG
CAAGACAATATCCATGACATTGATGGGGATAAAGAGGGCTCCAAAGAACA
ACCGGAAGAGAATCAGGGCGAAGAGGACGACACCGGAAACGGGGCCGGCA
GGGGTGCTGGTGGGGGGCGCAACAAGCGCAGTAGATCCTTGTCGAAAGAC
AGCCACGAAGGCAGCAGTACAAACAGCGCACCCCGAGTGGACATACAGCA
GTCAAGGGCGGTATCTACTGTCCCTGTCGTCGTAAGCCAGCGCGGGCGTT
TGATGCTTCCAAGAAAACGACACACCTGCGAGGAGTGAATGCGGCGGATG
GGGGAGGGGCACGAGTATGTGTCGTGTACCATCTGCCACGAGCACATAAA
GAGGAAGGCGCTACGCCAGGACGTTGGCGGCCATATCCTTGAACGTGCCT
ACCTACAGACAAGGGATGTGTGTGGCTTCTGCGGTAGGAAGAGACTGTGC
CGTTCTTCCAACACCCCGGCCACTAAGAAAGGGACTGCGAAGGTCTTGTC
GTCTTGCCGCTTCGCGCCGAGAGCAGATATGCGGGAGGAGGAAGTCTCTC
TCAATCTGAATACCGCGAGAAAGTCGACGAAGAGCACACTATGCACCAAT
TTGCCCATGGTGTGCAAGTTTTACGGGCCGGCAGAGTACATCTGGATGTA
CGGCATGGGGGACCACGTCGGGACGCATCACGCGCATATGTCCAGTCTTC
GGACAAGCGACGAAGATGCTCTGGCCTTCGTCAAGGAATACACCGAACGC
CAGGACGAAAAGGACGCAGTGCTCGCTTTCCTGCGATCGTATACCCGAAA
CCCGAGCGAGAGGACTGGCAGGCCACGAAAGGTTGGGGCAACAAGGGTGG
ATACGTCAGCGAGCCAACAGCGTGAGGGGGGGCAGCGAGCCGAGAAGGAG
ACCGACGAGGAAATGGACGACCCAGATAGGGAAGGCGCTGAGGAGAGGGA
CAGCGACCACGAGGGCAGCGACGACAGCGAGGAGAATGAAGAACAGGAAG
ACGACGGCGATGACAGCGACAAGGAGGATGAAGAAGAGCAAGACAATATC
CATGACATTGATGGGGATAAAGAGGGCTCCAAAGAACAACCGGAAGAGAA
TCAGGGCGAAGAGGACGACACCGGAAACGGGGCCGGCAGGGGTGCTGGTG
GGGGGCGCAACAAGCGCAGTAGATCCTTGTCGAAAGACAGCCACGAAGGC
AGCAGTACAAACAGCGCACCCCGAGTGGACATACAGCAGTCAAGGGCGGT
ATCTACTGTCCCTGTCGTCGTAAGCCAGCGCGGGCGTTTGATGCTTCCAA
GAAAACGACACACCTGCGAGGAGTGA
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