mRNA_H-fluviatilis_contig101959.449.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101959.449.1
Unique NamemRNA_H-fluviatilis_contig101959.449.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: D7FP92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP92_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 6.390e-40
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 1 
Query:    4 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCP+DQDWYYIRA
Sbjct:    1 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPYDQDWYYIRA 62
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: A0A835ZNM6_9STRA (Ribosomal protein S19e n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZNM6_9STRA)

HSP 1 Score: 102 bits (253), Expect = 3.010e-26
Identity = 44/62 (70.97%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    4 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MA YEP+G++VRDVA A FIKAYA+HLKNTGR ELP W DLVKT   KE+ P+D DWYY+RA
Sbjct:    1 MATYEPQGVSVRDVAPAKFIKAYADHLKNTGRFELPPWVDLVKTGTQKELAPYDPDWYYVRA 62
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: K3WSU7_GLOUD (Uncharacterized protein n=2 Tax=Oomycota TaxID=4762 RepID=K3WSU7_GLOUD)

HSP 1 Score: 98.2 bits (243), Expect = 1.100e-24
Identity = 45/64 (70.31%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    4 MADYE--PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MA+YE  PRG+TVRDV AADFIKAYAEHLK +G++ELPSW D+VKTA  KE  P D DWY++RA
Sbjct:    1 MAEYEETPRGVTVRDVKAADFIKAYAEHLKRSGKIELPSWWDIVKTASFKEYSPNDPDWYFVRA 64
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: A0A5D6XW04_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XW04_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.210e-24
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:    4 MADYE--PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MA+Y+  PRG+TVRDV AADFIKAYAEHLK +G++ELPSW D+VKTA  KE  P D DWY++RA
Sbjct:    1 MAEYDETPRGVTVRDVKAADFIKAYAEHLKRSGKIELPSWWDIVKTASFKEYSPTDPDWYFVRA 64
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: A0A0P5ZW38_9CRUS (40S ribosomal protein S19 n=3 Tax=Eukaryota TaxID=2759 RepID=A0A0P5ZW38_9CRUS)

HSP 1 Score: 96.7 bits (239), Expect = 4.320e-24
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 MADYE-PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MA+Y+ PRG+TVRDV  ADFIKAYAEHLK +G++ELPSW D+VKTA  KE  P D DWYY+RA
Sbjct:    1 MAEYDAPRGVTVRDVKPADFIKAYAEHLKRSGKMELPSWWDVVKTASFKEFSPADPDWYYVRA 63
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: A0A067C4P4_SAPPC (30S ribosomal protein S19e n=4 Tax=Eukaryota TaxID=2759 RepID=A0A067C4P4_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 6.120e-24
Identity = 44/63 (69.84%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 MADYE-PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MAD+E PRG+TVRDV  ADFIK YAEHLK +G++ELP+W D+VKTA +KE  P D DWYYIRA
Sbjct:    1 MADFEAPRGVTVRDVKPADFIKLYAEHLKRSGKMELPNWWDIVKTASYKEHSPVDADWYYIRA 63
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: A0A7S3LIR0_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LIR0_9STRA)

HSP 1 Score: 96.3 bits (238), Expect = 1.130e-23
Identity = 43/62 (69.35%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    4 MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MAD +  G TV+DV++  F+K YAEHLK  G++ELPSW DLVKTA HKE+CPFDQDWYYIRA
Sbjct:    1 MADKQ--GTTVKDVSSHAFVKMYAEHLKRQGKIELPSWVDLVKTATHKELCPFDQDWYYIRA 60
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: A0A024FTV2_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FTV2_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.790e-23
Identity = 43/63 (68.25%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    4 MADYE-PRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            M+DYE  RG+ VRDV AADFIKAYA+HLK +G++ELP+W D+VKTA  KE  P+D DWYYIRA
Sbjct:    1 MSDYEISRGVNVRDVKAADFIKAYADHLKRSGKMELPNWSDVVKTASFKEHAPYDPDWYYIRA 63
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: F0WMY7_9STRA (40S ribosomal protein S193 putative n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WMY7_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 4.220e-23
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 SMADYEP-RGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            +M++YE  RG+ VRDV+AADFIKAYA+HLK +G++ELPSW D+VKTA  KE  P+D DWYYIRA
Sbjct:   49 TMSEYETSRGVNVRDVSAADFIKAYADHLKRSGKMELPSWSDVVKTASFKEHSPYDPDWYYIRA 112
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BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Match: H3G8P8_PHYRM (Uncharacterized protein n=14 Tax=Peronosporaceae TaxID=4777 RepID=H3G8P8_PHYRM)

HSP 1 Score: 93.6 bits (231), Expect = 7.590e-23
Identity = 44/66 (66.67%), Postives = 51/66 (77.27%), Query Frame = 1 
Query:    4 MADYEP----RGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEMCPFDQDWYYIRA 189
            MADY+     RG+TVRDV  ADFIKAYAEHLK +G++ELP+W D+VKTA  KE  P D DWYYIRA
Sbjct:    1 MADYDEEEVTRGVTVRDVKPADFIKAYAEHLKRSGKIELPAWWDVVKTAAFKEYSPADPDWYYIRA 66
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101959.449.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FP92_ECTSI6.390e-4098.39Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZNM6_9STRA3.010e-2670.97Ribosomal protein S19e n=1 Tax=Tribonema minus Tax... [more]
K3WSU7_GLOUD1.100e-2470.31Uncharacterized protein n=2 Tax=Oomycota TaxID=476... [more]
A0A5D6XW04_9STRA2.210e-2468.75Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A0P5ZW38_9CRUS4.320e-2469.8440S ribosomal protein S19 n=3 Tax=Eukaryota TaxID=... [more]
A0A067C4P4_SAPPC6.120e-2469.8430S ribosomal protein S19e n=4 Tax=Eukaryota TaxID... [more]
A0A7S3LIR0_9STRA1.130e-2369.35Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A024FTV2_9STRA1.790e-2368.25Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
F0WMY7_9STRA4.220e-2367.1940S ribosomal protein S193 putative n=1 Tax=Albugo... [more]
H3G8P8_PHYRM7.590e-2366.67Uncharacterized protein n=14 Tax=Peronosporaceae T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101959contigH-fluviatilis_contig101959:627..815 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.3
Seed ortholog evalue4.7e-30
Seed eggNOG ortholog2880.D7FP92
Preferred nameRPS19
KEGG koko:K02966
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
GOsGO:0000028,GO:0000184,GO:0000462,GO:0000956,GO:0001906,GO:0002181,GO:0002262,GO:0002376,GO:0002520,GO:0002548,GO:0002682,GO:0002683,GO:0002684,GO:0002697,GO:0002698,GO:0002699,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005773,GO:0005829,GO:0005840,GO:0005844,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006407,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006611,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006950,GO:0006952,GO:0006955,GO:0006959,GO:0006996,GO:0006997,GO:0007000,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009893,GO:0009987,GO:0009991,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016477,GO:0017134,GO:0019222,GO:0019439,GO:0019538,GO:0019730,GO:0019838,GO:0019899,GO:0019900,GO:0019901,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0023052,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030312,GO:0030490,GO:0030595,GO:0031347,GO:0031348,GO:0031349,GO:0031369,GO:0031503,GO:0031640,GO:0031974,GO:0031981,GO:0032101,GO:0032102,GO:0032103,GO:0032501,GO:0032502,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034101,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035821,GO:0040011,GO:0042221,GO:0042254,GO:0042255,GO:0042274,GO:0042330,GO:0042592,GO:0042742,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044364,GO:0044391,GO:0044419,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0044877,GO:0045047,GO:0045088,GO:0045089,GO:0045184,GO:0045595,GO:0045824,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048534,GO:0048583,GO:0048584,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050657,GO:0050658,GO:0050727,GO:0050728,GO:0050729,GO:0050776,GO:0050777,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050829,GO:0050896,GO:0050900,GO:0051029,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051239,GO:0051240,GO:0051241,GO:0051259,GO:0051262,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051707,GO:0051716,GO:0055044,GO:0060255,GO:0060263,GO:0060264,GO:0060265,GO:0060266,GO:0060267,GO:0060268,GO:0060284,GO:0060326,GO:0061844,GO:0065003,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0070972,GO:0071166,GO:0071426,GO:0071428,GO:0071674,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0080134,GO:0090150,GO:0090304,GO:0097064,GO:0097159,GO:0097529,GO:0098542,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
EggNOG free text desc.ribosomal small subunit assembly
EggNOG OGsCOG2238@1,KOG3411@2759
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Hectar predicted targeting categoryother localisation
Exons1
Model size189
Cds size186
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.9642026-UTR-H-fluviatilis_contig101959:626..6291622929051.9642026-UTR-H-fluviatilis_contig101959:626..629Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101959 627..629 +
1691135164.3931172-UTR-H-fluviatilis_contig101959:626..6291691135164.3931172-UTR-H-fluviatilis_contig101959:626..629Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101959 627..629 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929052.001183-CDS-H-fluviatilis_contig101959:629..8151622929052.001183-CDS-H-fluviatilis_contig101959:629..815Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101959 630..815 +
1691135164.4053774-CDS-H-fluviatilis_contig101959:629..8151691135164.4053774-CDS-H-fluviatilis_contig101959:629..815Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101959 630..815 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101959.449.1prot_H-fluviatilis_contig101959.449.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101959 630..815 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101959.449.1

>prot_H-fluviatilis_contig101959.449.1 ID=prot_H-fluviatilis_contig101959.449.1|Name=mRNA_H-fluviatilis_contig101959.449.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=62bp
MADYEPRGITVRDVAAADFIKAYAEHLKNTGRVELPSWCDLVKTAPHKEM
CPFDQDWYYIRA
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mRNA from alignment at H-fluviatilis_contig101959:627..815+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101959.449.1 ID=mRNA_H-fluviatilis_contig101959.449.1|Name=mRNA_H-fluviatilis_contig101959.449.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=189bp|location=Sequence derived from alignment at H-fluviatilis_contig101959:627..815+ (Heribaudiella fluviatilis SAG_13_90)
AGCATGGCAGACTACGAGCCCCGTGGCATCACCGTGCGCGATGTCGCTGC
GGCCGACTTCATCAAGGCCTACGCGGAGCACCTCAAGAACACTGGGCGCG
TGGAGCTCCCCTCATGGTGCGACCTCGTCAAAACCGCGCCGCACAAGGAG
ATGTGCCCGTTCGACCAGGACTGGTACTACATCCGTGCC
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101959:627..815+

>mRNA_H-fluviatilis_contig101959.449.1 ID=mRNA_H-fluviatilis_contig101959.449.1|Name=mRNA_H-fluviatilis_contig101959.449.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=372bp|location=Sequence derived from alignment at H-fluviatilis_contig101959:627..815+ (Heribaudiella fluviatilis SAG_13_90)
ATGGCAGACTACGAGCCCCGTGGCATCACCGTGCGCGATGTCGCTGCGGC
CGACTTCATCAAGGCCTACGCGGAGCACCTCAAGAACACTGGGCGCGTGG
AGCTCCCCTCATGGTGCGACCTCGTCAAAACCGCGCCGCACAAGGAGATG
TGCCCGTTCGACCAGGACTGGTACTACATCCGTGCCATGGCAGACTACGA
GCCCCGTGGCATCACCGTGCGCGATGTCGCTGCGGCCGACTTCATCAAGG
CCTACGCGGAGCACCTCAAGAACACTGGGCGCGTGGAGCTCCCCTCATGG
TGCGACCTCGTCAAAACCGCGCCGCACAAGGAGATGTGCCCGTTCGACCA
GGACTGGTACTACATCCGTGCC
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