mRNA_H-fluviatilis_contig101952.448.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101952.448.1
Unique NamemRNA_H-fluviatilis_contig101952.448.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101952.448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101952contigH-fluviatilis_contig101952:362..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size261
Cds size258
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101952.448.1prot_H-fluviatilis_contig101952.448.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101952 364..678 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.7358494-UTR-H-fluviatilis_contig101952:361..3631622929051.7358494-UTR-H-fluviatilis_contig101952:361..363Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101952 362..363 +
1691135164.3524442-UTR-H-fluviatilis_contig101952:361..3631691135164.3524442-UTR-H-fluviatilis_contig101952:361..363Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101952 362..363 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929051.8602426-CDS-H-fluviatilis_contig101952:363..4371622929051.8602426-CDS-H-fluviatilis_contig101952:363..437Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101952 364..437 +
1691135164.359781-CDS-H-fluviatilis_contig101952:363..4371691135164.359781-CDS-H-fluviatilis_contig101952:363..437Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101952 364..437 +
1622929051.8725898-CDS-H-fluviatilis_contig101952:466..6171622929051.8725898-CDS-H-fluviatilis_contig101952:466..617Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101952 467..617 +
1691135164.3669863-CDS-H-fluviatilis_contig101952:466..6171691135164.3669863-CDS-H-fluviatilis_contig101952:466..617Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101952 467..617 +
1622929051.884973-CDS-H-fluviatilis_contig101952:645..6781622929051.884973-CDS-H-fluviatilis_contig101952:645..678Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101952 646..678 +
1691135164.38314-CDS-H-fluviatilis_contig101952:645..6781691135164.38314-CDS-H-fluviatilis_contig101952:645..678Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101952 646..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101952.448.1

>prot_H-fluviatilis_contig101952.448.1 ID=prot_H-fluviatilis_contig101952.448.1|Name=mRNA_H-fluviatilis_contig101952.448.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=86bp
MSTEGFPALFLRELWLVQHMRFLCRSPTYIILTPPLRPVIAWEPAARAAS
AASSCLSCPPKLVQSALSMSLLFKKAWVFQLLSAIE
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mRNA from alignment at H-fluviatilis_contig101952:362..678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101952.448.1 ID=mRNA_H-fluviatilis_contig101952.448.1|Name=mRNA_H-fluviatilis_contig101952.448.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=317bp|location=Sequence derived from alignment at H-fluviatilis_contig101952:362..678+ (Heribaudiella fluviatilis SAG_13_90)
ACATGTCAACAGAAGGTTTTCCTGCCTTGTTCTTGCGCGAACTGTGGCTT
GTGCAACACATGCGATTTCTCTGCCGGTTTTTTGCTACACTCACTGTTCC
GCTAGATCGCCCACATACATCATTCTGACCCCGCCATTACGGCCAGTGAT
TGCGTGGGAACCGGCTGCACGTGCGGCTTCTGCGGCGTCGTCGTGTTTGT
CCTGCCCCCCCAAGCTGGTCCAGTCGGCTTTGTCAATGAGCCTCCTTTTC
AAGAAGGTCGTTTACCCTGTCTTCAATATTTCAGGCGTGGGTATTTCAAC
TCTTGTCAGCCATTGAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101952:362..678+

>mRNA_H-fluviatilis_contig101952.448.1 ID=mRNA_H-fluviatilis_contig101952.448.1|Name=mRNA_H-fluviatilis_contig101952.448.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=516bp|location=Sequence derived from alignment at H-fluviatilis_contig101952:362..678+ (Heribaudiella fluviatilis SAG_13_90)
ATGTCAACAGAAGGTTTTCCTGCCTTGTTCTTGCGCGAACTGTGGCTTGT
GCAACACATGCGATTTCTCTGCCGATGTCAACAGAAGGTTTTCCTGCCTT
GTTCTTGCGCGAACTGTGGCTTGTGCAACACATGCGATTTCTCTGCCGAT
CGCCCACATACATCATTCTGACCCCGCCATTACGGCCAGTGATTGCGTGG
GAACCGGCTGCACGTGCGGCTTCTGCGGCGTCGTCGTGTTTGTCCTGCCC
CCCCAAGCTGGTCCAGTCGGCTTTGTCAATGAGCCTCCTTTTCAAGAAGA
TCGCCCACATACATCATTCTGACCCCGCCATTACGGCCAGTGATTGCGTG
GGAACCGGCTGCACGTGCGGCTTCTGCGGCGTCGTCGTGTTTGTCCTGCC
CCCCCAAGCTGGTCCAGTCGGCTTTGTCAATGAGCCTCCTTTTCAAGAAG
GCGTGGGTATTTCAACTCTTGTCAGCCATTGAGGCGTGGGTATTTCAACT
CTTGTCAGCCATTGAG
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