mRNA_H-fluviatilis_contig10192.445.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10192.445.1
Unique NamemRNA_H-fluviatilis_contig10192.445.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
[Close]
BLAST of mRNA_H-fluviatilis_contig10192.445.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE)

HSP 1 Score: 547 bits (1410), Expect = 1.130e-175
Identity = 419/843 (49.70%), Postives = 514/843 (60.97%), Query Frame = 1 
Query:  286 MRAADGWASALXXXXXXXXXXXXXXXXXXNVALSVVARSGREDVALXXXXXXXXXXXXXXXXXXXXXXXXXXXGEKWQEAVKILEVDMACDKVQPDVVTFTSVIHSCSGPRGNWEKAYELLDRMYQNEKGAKPNKNTYDLVIQACGHGGEWELAMTLLDDMCDLGIKLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRAKEVFDRERYVNRLKPSLQMYGALLSCLAAAGQWADVLLYFDRMVADGVVPDAAATVNGVLAAAQLGDGLRALSLLDGKKW--------------VGESE----------DANEISRNPLASPRSDGEN------------------RPRRSTT-----------------------------EGIAALQDCI--KGQEATARAQEAEGGGGSKPVFGHGGWEAMTPGFLSTLLHALDGEKQDVVVLETIRRAREKGIVLNSSIYRQGAHICALKACGNLGDYTQASTLISHMREEKLTPDIIHWNHALRSTTASAQWQHAQLNLQAMKAAGVEPDEFSYAMALKACSAGLWSGNSWDEVDAWGTQDNKSSASSRHQTNVDERRRRKQDEAQDSLP--CRGRYALQLLGEMDASGIRVCEQSLSLAMAACLEGHRDVR-----FLGNFPSPPARERWLSEAALSLFDRLLRTGATPSTTSCALALKACARTGNANRASSLFLSMMDMMDQHPTQASVRNSPQSSSKVLQSAAGGS-------------SKQRSTLEVRSWHLASAIAAYDAAGDWVGAMRLWEEAVRRGVLPCSPGYSAAIAAAARAGDLDAAFRLKQEA 2535
            M A DGW +AL                  N ALSVVARSGREDVAL          XXXXXXXXXXXX      EKWQEAV++LEVDM   KV+             +GP GNWEKAY+LLD M+Q+ +GAKP+K+TYDLVIQACGHGGEWEL +TL+DDM DLGI    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KRA E+FD  RYV+R++PSLQ+YGALL  LA   +WADVL+Y DRMVADGV  DAAAT   VLAAA+LGDG RALSLL+G +                G  E          D  +  R P A    DG                    R +R+ T                             +G+   Q+C+  + ++ T R     GG       G GGWE +TPG L ++L ALD + +D  VLE ++R REKG++LN SIYR     CALKACGNLGDY QA+ ++  M EE LTPDI+HWNHALR++ A A+WQ  +L L+ M+ +G  PDEFSY+MALKACSAGLWSG+SW +   WG +++KSS   ++  N + +     D+ +  +P  CRG+ A++LL EM   G+R+   + +LAMAACLEGHRD        L     PP+ +  L+EAAL LFDRL+  G TP+  + A ALKACART N  RA++LF  M+D        A+V+ S   SS  L++ A G+             S  +   EVR WHLASAIAAYDAAGDW GA +LW+EA+RRGV P SPGY AA++ A RAGD  AA +L +EA
Sbjct:  336 MTAVDGWGAALRLLEGVLPDVNTY-----NAALSVVARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQNCVDEESEDGTRRT----GGDSDSVDDGVGGWEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYR-----CALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSCRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAAS---PPAAVQTSSNLSS--LRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEA 1159
[Close]
BLAST of mRNA_H-fluviatilis_contig10192.445.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI)

HSP 1 Score: 526 bits (1356), Expect = 1.160e-172
Identity = 385/757 (50.86%), Postives = 479/757 (63.28%), Query Frame = 1 
Query:  547 MACDKVQPDVVTFTSVIHSCSGPRGNWEKAYELLDRMYQNEKGAKPNKNTYDLVIQACGHGGEWELAMTLLDDMCDLGIKLDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRAKEVFDRERYVNRLKPSLQMYGALLSCLAAAGQWADVLLYFDRMVADGVVPDAAATVNGVLAAAQLGDGLRALSLLDG---------------KKWVGESE---------DANEISRNPLASPRSDG-------------------ENRPRRSTTEGIAALQDCIKGQEATARAQ-----EAEGGGGSKPVFGH---------------------------GGWEAMTPGFLSTLLHALDGEKQDVVVLETIRRAREKGIVLNSSIYRQGAHICALKACGNLGDYTQASTLISHMREEKLTPDIIHWNHALRSTTASAQWQHAQLNLQAMKAAGVEPDEFSYAMALKACSAGLWSGNSWDEVDAWGTQDNKSSASSRHQTNVDERRRRKQDEAQDSLP--CRGRYALQLLGEMDASGIRVCEQSLSLAMAACLEGHRDVR-----FLGNFPSPPARERWLSEAALSLFDRLLRTGATPSTTSCALALKACARTGNANRASSLFLSMMDMMDQHPTQASVRNSPQSSSKVLQSAAG---GSSKQRSTL---------EVRSWHLASAIAAYDAAGDWVGAMRLWEEAVRRGVLPCSPGYSAAIAAAARAGDLDAAFRLKQEA 2535
            M   KV+PDV++FTS IH+C+GP GNWEKAY+LLD M+Q+ +GAKP+K+TYDLVIQACGHGGEWEL +TL+DDM DLGI    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   KRA E+FD+ RYV+R++PSLQ+YGALL  LA   +WADVL+Y DRMVADGV  DAAAT   VLAAA+LGDG RALSLL+G               +  VGE           D  +  R P      DG                   E R R +T  G     +   G+E+  RA+      +E  G  + V                              GGWE +TPG L+++L ALD + +D  VLE ++R REKGI+LN SIYR     CALKACGNLGDY QA+ ++  M EE LTPDI+HWNHALR++ A A+WQ  +L LQ M+  G  PDEFSY+MALKACSAGLWSG+SW +   WG +++ SS+  R+  + + +     D+ +  +P  CRG+ A++LL EM   G+R+   + +LAMAACLEGHRD        L     PP+ +  L+EA L LFDRL+  G TP+  + A ALKACART N  RA++LF  M+D  D  P  A+VR S  +SS +   A+G    S ++R +          EVR WHLAS I AYDAAGDW GA +LW+EA+RRGV P SPGY AA++AA RAGD  AA +L +EA
Sbjct:    1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEGEPEALLERRQRAATAGG-----EKRHGEESEVRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYR-----CALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNALSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLD--DASPP-AAVRTSSTASS-LCNGASGDHVASGQRRHSPPPSPPQPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEA 743
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10192.445.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L2A2_9PHAE1.130e-17549.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQ90_ECTSI1.160e-17250.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10192contigH-fluviatilis_contig10192:384..5860 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score538.5
Seed ortholog evalue5.6e-150
Seed eggNOG ortholog2880.D7FQ90
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-01_007030.1
Exons11
Model size2535
Cds size2517
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10192.445.1prot_H-fluviatilis_contig10192.445.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10192 402..5860 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.7104387-UTR-H-fluviatilis_contig10192:383..4011622929050.7104387-UTR-H-fluviatilis_contig10192:383..401Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10192 384..401 +
1691135164.1170204-UTR-H-fluviatilis_contig10192:383..4011691135164.1170204-UTR-H-fluviatilis_contig10192:383..401Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10192 384..401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929050.7261605-CDS-H-fluviatilis_contig10192:401..4801622929050.7261605-CDS-H-fluviatilis_contig10192:401..480Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 402..480 +
1691135164.1369526-CDS-H-fluviatilis_contig10192:401..4801691135164.1369526-CDS-H-fluviatilis_contig10192:401..480Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 402..480 +
1622929050.7415984-CDS-H-fluviatilis_contig10192:998..12461622929050.7415984-CDS-H-fluviatilis_contig10192:998..1246Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 999..1246 +
1691135164.1464365-CDS-H-fluviatilis_contig10192:998..12461691135164.1464365-CDS-H-fluviatilis_contig10192:998..1246Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 999..1246 +
1622929051.255815-CDS-H-fluviatilis_contig10192:1543..16491622929051.255815-CDS-H-fluviatilis_contig10192:1543..1649Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 1544..1649 +
1691135164.1552627-CDS-H-fluviatilis_contig10192:1543..16491691135164.1552627-CDS-H-fluviatilis_contig10192:1543..1649Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 1544..1649 +
1622929051.2692971-CDS-H-fluviatilis_contig10192:1871..19811622929051.2692971-CDS-H-fluviatilis_contig10192:1871..1981Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 1872..1981 +
1691135164.1759832-CDS-H-fluviatilis_contig10192:1871..19811691135164.1759832-CDS-H-fluviatilis_contig10192:1871..1981Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 1872..1981 +
1622929051.2875252-CDS-H-fluviatilis_contig10192:2349..24301622929051.2875252-CDS-H-fluviatilis_contig10192:2349..2430Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 2350..2430 +
1691135164.190534-CDS-H-fluviatilis_contig10192:2349..24301691135164.190534-CDS-H-fluviatilis_contig10192:2349..2430Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 2350..2430 +
1622929051.2981906-CDS-H-fluviatilis_contig10192:2637..29211622929051.2981906-CDS-H-fluviatilis_contig10192:2637..2921Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 2638..2921 +
1691135164.207541-CDS-H-fluviatilis_contig10192:2637..29211691135164.207541-CDS-H-fluviatilis_contig10192:2637..2921Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 2638..2921 +
1622929051.3099542-CDS-H-fluviatilis_contig10192:3152..37731622929051.3099542-CDS-H-fluviatilis_contig10192:3152..3773Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 3153..3773 +
1691135164.2233546-CDS-H-fluviatilis_contig10192:3152..37731691135164.2233546-CDS-H-fluviatilis_contig10192:3152..3773Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 3153..3773 +
1622929051.3217847-CDS-H-fluviatilis_contig10192:3999..41741622929051.3217847-CDS-H-fluviatilis_contig10192:3999..4174Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 4000..4174 +
1691135164.2346163-CDS-H-fluviatilis_contig10192:3999..41741691135164.2346163-CDS-H-fluviatilis_contig10192:3999..4174Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 4000..4174 +
1622929051.3315802-CDS-H-fluviatilis_contig10192:4447..46721622929051.3315802-CDS-H-fluviatilis_contig10192:4447..4672Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 4448..4672 +
1691135164.2438557-CDS-H-fluviatilis_contig10192:4447..46721691135164.2438557-CDS-H-fluviatilis_contig10192:4447..4672Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 4448..4672 +
1622929051.345261-CDS-H-fluviatilis_contig10192:4928..51531622929051.345261-CDS-H-fluviatilis_contig10192:4928..5153Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 4929..5153 +
1691135164.2553823-CDS-H-fluviatilis_contig10192:4928..51531691135164.2553823-CDS-H-fluviatilis_contig10192:4928..5153Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 4929..5153 +
1622929051.3603523-CDS-H-fluviatilis_contig10192:5497..58601622929051.3603523-CDS-H-fluviatilis_contig10192:5497..5860Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 5498..5860 +
1691135164.270536-CDS-H-fluviatilis_contig10192:5497..58601691135164.270536-CDS-H-fluviatilis_contig10192:5497..5860Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10192 5498..5860 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10192.445.1

>prot_H-fluviatilis_contig10192.445.1 ID=prot_H-fluviatilis_contig10192.445.1|Name=mRNA_H-fluviatilis_contig10192.445.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=839bp
MDVMRKRNVVPNIISYGTAISSCARCGNWQRALLLLEEMSSRGFTPNAVV
YGSAVHACVLGGEPRRALALLDEMMDRGVVPDAAAFTAGMRAADGWASAL
RLLEAMKRHGVMPDLVAYNVALSVVARSGREDVALAILERMRKDGVCPDL
VSFNTAIDACATGEKWQEAVKILEVDMACDKVQPDVVTFTSVIHSCSGPR
GNWEKAYELLDRMYQNEKGAKPNKNTYDLVIQACGHGGEWELAMTLLDDM
CDLGIKLDTQTFNIAISVCARSGQWLAAETLAASMPSRGVTPDSFTYASV
VAACARAGEWKRAKEVFDRERYVNRLKPSLQMYGALLSCLAAAGQWADVL
LYFDRMVADGVVPDAAATVNGVLAAAQLGDGLRALSLLDGKKWVGESEDA
NEISRNPLASPRSDGENRPRRSTTEGIAALQDCIKGQEATARAQEAEGGG
GSKPVFGHGGWEAMTPGFLSTLLHALDGEKQDVVVLETIRRAREKGIVLN
SSIYRQGAHICALKACGNLGDYTQASTLISHMREEKLTPDIIHWNHALRS
TTASAQWQHAQLNLQAMKAAGVEPDEFSYAMALKACSAGLWSGNSWDEVD
AWGTQDNKSSASSRHQTNVDERRRRKQDEAQDSLPCRGRYALQLLGEMDA
SGIRVCEQSLSLAMAACLEGHRDVRFLGNFPSPPARERWLSEAALSLFDR
LLRTGATPSTTSCALALKACARTGNANRASSLFLSMMDMMDQHPTQASVR
NSPQSSSKVLQSAAGGSSKQRSTLEVRSWHLASAIAAYDAAGDWVGAMRL
WEEAVRRGVLPCSPGYSAAIAAAARAGDLDAAFRLKQEA
back to top

mRNA from alignment at H-fluviatilis_contig10192:384..5860+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10192.445.1 ID=mRNA_H-fluviatilis_contig10192.445.1|Name=mRNA_H-fluviatilis_contig10192.445.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=5477bp|location=Sequence derived from alignment at H-fluviatilis_contig10192:384..5860+ (Heribaudiella fluviatilis SAG_13_90)
CAGCACGCGTTGGATATCATGGATGTGATGCGAAAGCGAAACGTCGTGCC
CAATATCATCAGCTACGGGACTGCCATCAGCAGTTGCGCTCGATGTGGTG
CGTTACATACTCATTAGGCGTTCTTCACGGTAGTTTTAGTGGCAAACCTG
CACGTCTTGAGGTAATATGCGGAGGGGACAAGCGGCAGTTTTCCTCTGGT
GAAGTTCATATTTTATGTTTTTCTCGGTGTACAAGCGCGCACGGTGCACC
ATCGTTGAGTCTCCGCAAGAAAAGACATTGCGGCAGGATCCGTGATGGGT
GTTTCACAGTTGCCGTACAGCCCCTGGAGAAAGATTTGTAGAGATTCTGT
GCTTCCGTCCGCAACGATATGCACCTCAAAGATTCTGCACGCGCTGATTC
TTCGGGGGGAGAGACAAGGATCTCTGCCGGGTTGGGTGGACACGCGTTTT
CGGTTGCCGTGTGCGCACAACGCTGCAGCGATGACCCTTTTGATCGCTAT
TCCACCAATAAGGCTTTCCTGTTCCTATCATGAGGTGTTTTTGGGTCCAC
GTCGGAACCCCTATTGCGCTCCTGCTGAACATTTCCTTCCTGTCGATGTC
CTCTCTACCCAAAAGGCAATTGGCAGAGGGCGTTGTTGCTACTGGAAGAA
ATGTCATCACGAGGATTCACGCCGAATGCCGTTGTTTACGGATCCGCGGT
CCATGCCTGTGTGTTGGGTGGAGAGCCACGGCGGGCGTTGGCATTGCTGG
ACGAAATGATGGATCGGGGCGTGGTTCCTGATGCGGCAGCATTCACAGCT
GGAATGCGCGCGGCTGATGGATGGGCTTCGGCGCTTCGACTTCTGGAGGC
AATGAAGCGGCATGTAAGCTTCGGGGGGAAGCCAACCGGAGGAACTTGGG
GGCAAAGCCAAAGGATTCGTCGTTGATGCATAAAATCGTGGACCCCGCTC
GCATCCCAACGACATGCATGCCATAATGAAGGCCTTTTTCTATGACACCG
TCTGAAAGCAAAAGTCTAGTTGTATTCTATGGGCGTTTGGAATCGAGTAG
ACCTCTGCGCGGTTGCATGAGAAGACTGCTTCGTCGAGGACGTTGCGCGA
ACGTATGGCAGCAAGTACTTTTGCGACGTTGTTGTGTGCTCTCATGTAAC
CGTGTGGCAGGGGGTCATGCCGGACCTGGTGGCGTATAACGTGGCTCTGA
GCGTTGTCGCGCGCAGCGGGCGGGAGGATGTGGCACTGGCAATTCTAGAG
CGGATGCGAAAGGACGGTGAGATTCACAAACCGTTCAATAATGATCACTT
CCGTCCGTAATTTCCGTGTCACTGCATTGTTTTGCCTAGGTTCCTTGTTT
TTTTTGCGTGGAGTTTCGTTGAGAAACATAAACGCTTGTGCGTATCAGCT
CCTCATCCACTTGTTCGTGTTGATTGGCAAGGTTCACCTGCCACGCCCGA
GCGCTTACCCATCTTTTCCCCTTTTCCCGCCGTTACAGGTGTATGCCCTG
ACTTGGTGAGTTTCAACACTGCCATCGATGCTTGCGCTACCGGCGAAAAG
TGGCAGGAGGCAGTCAAGATACTTGAAGTGGACATGGCCTGCGACAAGGT
AATCACCGTTGTTAATGCAGTAGTTGAAGTCAAGAACATATTACTGAAGG
CCGGTGCGTCGTTGCTGACTGATGCGGGCGGAACCTGTGTTGCTTCCCTG
TTCGTTCTGTGCATGCGAGAGGACGCACCGGTCGGATGATGTAAGTCGGA
CATTTTTGTACGGGTAGCTGTTGGTATTTCGTGCTGCCTTGCAGTCCTTG
GGCGTCTCTTTTCGCCCGCGTCGCTATCCATGTGTTCACGGCGCGGAACT
TGCGGCAAGGTCCACCTTACCGTGCCTCCAGTGTCATATTGCAGGTTTCT
CTTACGAGCGCCTGATGCCGATGACTACCAGCCGTATGCGTACGCCTGTG
TGTTTCGTGGCTTCAGGTTCAACCCGACGTTGTCACGTTCACGTCGGTTA
TTCACTCTTGCTCGGGTCCTAGAGGGAACTGGGAGAAAGCGTACGAGGTG
GGTGGCATCGCTTCGTATCATAGCAGAGATTAGAGCACTATCCTGGCATG
AGTGAATTTACCCTCGTGGTTGCTCGCAGAATGTTTTGCTTGCGTGAATG
GAGGGCTGTCTCTGCTGCCGTGGTCCATATTGTGTATGCTTCACCTTGAC
CGCGTTGTGTGACTTATCGTCGCCGTTTTATGCTCGCTCACTTTTCTCAC
TCAGCTTCTTGACCGGATGTATCAGAACGAGAAGGGTGCAAAGCCGAACA
AAAACACGTACGACCTCGTGATACAAGCCTGTGGTCATGGAGGCGAATGG
GAGTTGGCGATGACGCTTTTGGACGATATGTGCGATTTGGGCATCAAGCT
GGACACTCAAACTTTCAACATCGCAATCTCTGTGTGCGCGCGATCAGGGC
AATGGCTCGCCGCGGAGACGCTTGCGGCGAGCATGCCGTCTCGTGGAGTG
ACTCCTGACAGTTTCACCTACGCCTCCGTGGTGGCAGCGTGAGTCCGGTT
GCGCTGAGAACTGGTGATTTTTGTTCAAGGTCAAAATCTGCGGGGTGCGG
TACCGATGTTCGGATGCAGATATCATTGAGGTGCATTGCACGTCCCGTTA
AAGTGAACGATGAAAAGGCGTTCAATGTAAGGCATAATTGCACAGCTGCT
ATATCCCCAACACCTAAATGAGGCGAATCCCTTATACGGCATATTGGACT
TTCTGCAAAACCTGAACAGGTGCGCCCGTGCCGGAGAGTGGAAGCGGGCG
AAAGAAGTGTTTGACCGTGAGCGGTATGTAAACCGCTTGAAGCCTTCGCT
CCAAATGTACGGCGCCCTGCTTTCGTGCTTAGCAGCGGCCGGGCAATGGG
CGGATGTGCTGCTATACTTCGATCGCATGGTAGCCGACGGCGTGGTTCCG
GACGCAGCGGCGACTGTCAACGGTGTCCTAGCAGCCGCCCAGCTCGGCGA
TGGCCTTCGCGCTCTCTCCCTCTTGGACGGCAAGAAATGGGTCGGGGAGA
GCGAGGATGCAAACGAAATTTCACGGAACCCGCTTGCGTCGCCCAGGTCG
GACGGAGAAAATAGACCGCGAAGGTCTACAACGGAAGGAATAGCTGCCTT
GCAGGACTGTATCAAGGGGCAGGAGGCCACTGCCCGGGCGCAGGAAGCCG
AGGGGGGTGGTGGGTCAAAACCGGTGTTTGGCCACGGAGGCTGGGAGGCG
ATGACACCCGGGTTCCTCAGTACGCTTCTTCATGCTCTCGACGGCGAGAA
ACAGGACGTCGTTGTGCTCGAGACCATCAGGCGGGCTCGCGAGAAGGGTA
TTGTGCTCAATTCGAGCATCTACAGGCAAGGAGCTCACATGTCGTTCAGC
TTTTTGGATGATGGGACACGTAAAACCTGCTGACCGACTTTTTTGCTGTT
TTTCATCGAGCACTCTACGTTCCGGTAAGGCCCGGGCTTACCTGTTTTCA
GGCTCATTCCTTGCCAGCCCTTTCCGGCCTGCAGAGCGGCTTTCCAACAT
ATCCGATACCGATGGTTGACAAGCAATTGCTACCACTTTCCGTGTTTCCG
TCATGTCCTGGTGTAGATGCGCCCTGAAAGCGTGCGGAAACCTGGGAGAC
TATACCCAGGCTAGCACCCTGATATCACACATGCGCGAGGAGAAGCTGAC
GCCGGATATCATACACTGGAACCACGCCCTCCGCTCGACAACCGCATCTG
CTCAGTGGCAGCATGCACAGTTAAATCTCCAGGCGATGAAGGTGAGATCG
CACGACATCGAACGTGAAACGCGATGCTTTTGCTCCGAAATCGAACGGCG
TGACAGCTTGCTTTTGGCGTCATTTGTCAGTGTTTCGGTCCAGCTACATC
ACACTACGGATATCCACACCACTACTGGCAGCTCGGTTCGCCACAATTTT
TTCCGGTGGTTGGAATACTGTGTTGTGAGACCTGGTTGACGTGAATAGGC
AGCTGGTCAAAAGAAAAAGGTAATACTTTTGATTCCCCCGGAATCACCTT
GTACAAATATACAGGCTGCTGGTGTCGAGCCCGACGAGTTCAGCTACGCG
ATGGCCCTTAAAGCTTGTAGCGCAGGCCTCTGGTCCGGGAACTCTTGGGA
CGAAGTTGACGCATGGGGAACACAGGACAACAAGTCCTCGGCATCAAGCC
GACACCAAACTAACGTCGATGAGAGACGACGGAGAAAGCAGGATGAAGCA
CAAGATTCTCTGCCATGCCGAGGCAGATATGCTCTACAGGTTAGGGAGGC
CGGGAGGGGTTCCCCGTGCACAGCTGTGTGATTACGTATATTTGGTGCAG
CATTTTTCACGTTAGCGATATCCACCGACCTAAGAGCCAGGTGATGACTT
TGAACGGACTGATCGCAGGCGTGGAGCCAAAAAATTACATAAATCACGTG
GCCGACGTGCTGATAGCCACGCTCACCACTTGTACTCTTTTCTGCCTGCC
TTTAATTCTACCCCGTGGCCAACGGGTACCATTTGCCACCCGCAGCTTTT
GGGAGAAATGGACGCCTCCGGCATTCGCGTTTGCGAGCAGTCCCTGTCTC
TCGCCATGGCAGCGTGTCTCGAGGGACACAGGGATGTCCGCTTCCTCGGC
AATTTCCCAAGTCCCCCTGCACGCGAACGCTGGCTGTCGGAGGCGGCGCT
GTCGTTGTTTGACCGCTTGCTGAGAACTGGGGCAACACCTTCGACGACGT
CGTGTGCCTTAGCGTTGAAGGTACCGCGAATGCTGAGGAGATCATGTAAA
GTAGGTGGAAGGTTGCTCATCGCAGCGGATGGGGTGGTTTTAAGCGTGTA
CTGCGTGCGAGGATATTTTCCGCACCGGGCTCAAAATCGGTTCTTCTCGT
GTCGGATGGTTGCGTAGCTTGTGCTACCACAGTCGTTGCACAGGAGGCAA
CGCTCGGGAACATCAGGGCTCTTCACGCATGTACCTAGATCGCAGTGCAG
CAATCAGAGTGCCACTCACTGAACAATTGCACCGCAAATCCACCGCATGC
GCCAAAACGATCACAATTTGACTCATTTTCTTTCTGCCCTGCCCCCGATT
CGTCTCAATCCCAGGCATGTGCTCGCACCGGTAATGCGAACCGAGCCTCC
TCGTTATTCCTTTCTATGATGGACATGATGGACCAACATCCCACCCAAGC
CTCTGTGCGAAACTCCCCACAATCTTCGTCGAAAGTTCTGCAATCCGCCG
CTGGAGGGTCATCGAAACAACGGTCCACCCTCGAGGTACGCTCCTGGCAC
TTGGCCAGTGCAATAGCGGCTTATGATGCGGCAGGAGACTGGGTAGGTGC
GATGCGTTTGTGGGAGGAAGCCGTGAGGAGAGGTGTGTTGCCGTGCAGCC
CCGGTTACAGCGCTGCAATTGCAGCCGCAGCGCGTGCAGGCGACTTGGAC
GCGGCGTTCCGGCTGAAACAAGAGGCG
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10192:384..5860+

>mRNA_H-fluviatilis_contig10192.445.1 ID=mRNA_H-fluviatilis_contig10192.445.1|Name=mRNA_H-fluviatilis_contig10192.445.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=5034bp|location=Sequence derived from alignment at H-fluviatilis_contig10192:384..5860+ (Heribaudiella fluviatilis SAG_13_90)
ATGGATGTGATGCGAAAGCGAAACGTCGTGCCCAATATCATCAGCTACGG
GACTGCCATCAGCAGTTGCGCTCGATGTGATGGATGTGATGCGAAAGCGA
AACGTCGTGCCCAATATCATCAGCTACGGGACTGCCATCAGCAGTTGCGC
TCGATGTGGCAATTGGCAGAGGGCGTTGTTGCTACTGGAAGAAATGTCAT
CACGAGGATTCACGCCGAATGCCGTTGTTTACGGATCCGCGGTCCATGCC
TGTGTGTTGGGTGGAGAGCCACGGCGGGCGTTGGCATTGCTGGACGAAAT
GATGGATCGGGGCGTGGTTCCTGATGCGGCAGCATTCACAGCTGGAATGC
GCGCGGCTGATGGATGGGCTTCGGCGCTTCGACTTCTGGAGGCAATGAAG
CGGCATGCAATTGGCAGAGGGCGTTGTTGCTACTGGAAGAAATGTCATCA
CGAGGATTCACGCCGAATGCCGTTGTTTACGGATCCGCGGTCCATGCCTG
TGTGTTGGGTGGAGAGCCACGGCGGGCGTTGGCATTGCTGGACGAAATGA
TGGATCGGGGCGTGGTTCCTGATGCGGCAGCATTCACAGCTGGAATGCGC
GCGGCTGATGGATGGGCTTCGGCGCTTCGACTTCTGGAGGCAATGAAGCG
GCATGGGGTCATGCCGGACCTGGTGGCGTATAACGTGGCTCTGAGCGTTG
TCGCGCGCAGCGGGCGGGAGGATGTGGCACTGGCAATTCTAGAGCGGATG
CGAAAGGACGGGGGTCATGCCGGACCTGGTGGCGTATAACGTGGCTCTGA
GCGTTGTCGCGCGCAGCGGGCGGGAGGATGTGGCACTGGCAATTCTAGAG
CGGATGCGAAAGGACGGTGTATGCCCTGACTTGGTGAGTTTCAACACTGC
CATCGATGCTTGCGCTACCGGCGAAAAGTGGCAGGAGGCAGTCAAGATAC
TTGAAGTGGACATGGCCTGCGACAAGGTGTATGCCCTGACTTGGTGAGTT
TCAACACTGCCATCGATGCTTGCGCTACCGGCGAAAAGTGGCAGGAGGCA
GTCAAGATACTTGAAGTGGACATGGCCTGCGACAAGGTTCAACCCGACGT
TGTCACGTTCACGTCGGTTATTCACTCTTGCTCGGGTCCTAGAGGGAACT
GGGAGAAAGCGTACGAGGTTCAACCCGACGTTGTCACGTTCACGTCGGTT
ATTCACTCTTGCTCGGGTCCTAGAGGGAACTGGGAGAAAGCGTACGAGCT
TCTTGACCGGATGTATCAGAACGAGAAGGGTGCAAAGCCGAACAAAAACA
CGTACGACCTCGTGATACAAGCCTGTGGTCATGGAGGCGAATGGGAGTTG
GCGATGACGCTTTTGGACGATATGTGCGATTTGGGCATCAAGCTGGACAC
TCAAACTTTCAACATCGCAATCTCTGTGTGCGCGCGATCAGGGCAATGGC
TCGCCGCGGAGACGCTTGCGGCGAGCATGCCGTCTCGTGGAGTGACTCCT
GACAGTTTCACCTACGCCTCCGTGGTGGCAGCCTTCTTGACCGGATGTAT
CAGAACGAGAAGGGTGCAAAGCCGAACAAAAACACGTACGACCTCGTGAT
ACAAGCCTGTGGTCATGGAGGCGAATGGGAGTTGGCGATGACGCTTTTGG
ACGATATGTGCGATTTGGGCATCAAGCTGGACACTCAAACTTTCAACATC
GCAATCTCTGTGTGCGCGCGATCAGGGCAATGGCTCGCCGCGGAGACGCT
TGCGGCGAGCATGCCGTCTCGTGGAGTGACTCCTGACAGTTTCACCTACG
CCTCCGTGGTGGCAGCGTGCGCCCGTGCCGGAGAGTGGAAGCGGGCGAAA
GAAGTGTTTGACCGTGAGCGGTATGTAAACCGCTTGAAGCCTTCGCTCCA
AATGTACGGCGCCCTGCTTTCGTGCTTAGCAGCGGCCGGGCAATGGGCGG
ATGTGCTGCTATACTTCGATCGCATGGTAGCCGACGGCGTGGTTCCGGAC
GCAGCGGCGACTGTCAACGGTGTCCTAGCAGCCGCCCAGCTCGGCGATGG
CCTTCGCGCTCTCTCCCTCTTGGACGGCAAGAAATGGGTCGGGGAGAGCG
AGGATGCAAACGAAATTTCACGGAACCCGCTTGCGTCGCCCAGGTCGGAC
GGAGAAAATAGACCGCGAAGGTCTACAACGGAAGGAATAGCTGCCTTGCA
GGACTGTATCAAGGGGCAGGAGGCCACTGCCCGGGCGCAGGAAGCCGAGG
GGGGTGGTGGGTCAAAACCGGTGTTTGGCCACGGAGGCTGGGAGGCGATG
ACACCCGGGTTCCTCAGTACGCTTCTTCATGCTCTCGACGGCGAGAAACA
GGACGTCGTTGTGCTCGAGACCATCAGGCGGGCTCGCGAGAAGGGTATTG
TGCTCAATTCGAGCATCTACAGGCAAGGAGCTCACATGTGCGCCCGTGCC
GGAGAGTGGAAGCGGGCGAAAGAAGTGTTTGACCGTGAGCGGTATGTAAA
CCGCTTGAAGCCTTCGCTCCAAATGTACGGCGCCCTGCTTTCGTGCTTAG
CAGCGGCCGGGCAATGGGCGGATGTGCTGCTATACTTCGATCGCATGGTA
GCCGACGGCGTGGTTCCGGACGCAGCGGCGACTGTCAACGGTGTCCTAGC
AGCCGCCCAGCTCGGCGATGGCCTTCGCGCTCTCTCCCTCTTGGACGGCA
AGAAATGGGTCGGGGAGAGCGAGGATGCAAACGAAATTTCACGGAACCCG
CTTGCGTCGCCCAGGTCGGACGGAGAAAATAGACCGCGAAGGTCTACAAC
GGAAGGAATAGCTGCCTTGCAGGACTGTATCAAGGGGCAGGAGGCCACTG
CCCGGGCGCAGGAAGCCGAGGGGGGTGGTGGGTCAAAACCGGTGTTTGGC
CACGGAGGCTGGGAGGCGATGACACCCGGGTTCCTCAGTACGCTTCTTCA
TGCTCTCGACGGCGAGAAACAGGACGTCGTTGTGCTCGAGACCATCAGGC
GGGCTCGCGAGAAGGGTATTGTGCTCAATTCGAGCATCTACAGGCAAGGA
GCTCACATATGCGCCCTGAAAGCGTGCGGAAACCTGGGAGACTATACCCA
GGCTAGCACCCTGATATCACACATGCGCGAGGAGAAGCTGACGCCGGATA
TCATACACTGGAACCACGCCCTCCGCTCGACAACCGCATCTGCTCAGTGG
CAGCATGCACAGTTAAATCTCCAGGCGATGAAGATGCGCCCTGAAAGCGT
GCGGAAACCTGGGAGACTATACCCAGGCTAGCACCCTGATATCACACATG
CGCGAGGAGAAGCTGACGCCGGATATCATACACTGGAACCACGCCCTCCG
CTCGACAACCGCATCTGCTCAGTGGCAGCATGCACAGTTAAATCTCCAGG
CGATGAAGGCTGCTGGTGTCGAGCCCGACGAGTTCAGCTACGCGATGGCC
CTTAAAGCTTGTAGCGCAGGCCTCTGGTCCGGGAACTCTTGGGACGAAGT
TGACGCATGGGGAACACAGGACAACAAGTCCTCGGCATCAAGCCGACACC
AAACTAACGTCGATGAGAGACGACGGAGAAAGCAGGATGAAGCACAAGAT
TCTCTGCCATGCCGAGGCAGATATGCTCTACAGGCTGCTGGTGTCGAGCC
CGACGAGTTCAGCTACGCGATGGCCCTTAAAGCTTGTAGCGCAGGCCTCT
GGTCCGGGAACTCTTGGGACGAAGTTGACGCATGGGGAACACAGGACAAC
AAGTCCTCGGCATCAAGCCGACACCAAACTAACGTCGATGAGAGACGACG
GAGAAAGCAGGATGAAGCACAAGATTCTCTGCCATGCCGAGGCAGATATG
CTCTACAGCTTTTGGGAGAAATGGACGCCTCCGGCATTCGCGTTTGCGAG
CAGTCCCTGTCTCTCGCCATGGCAGCGTGTCTCGAGGGACACAGGGATGT
CCGCTTCCTCGGCAATTTCCCAAGTCCCCCTGCACGCGAACGCTGGCTGT
CGGAGGCGGCGCTGTCGTTGTTTGACCGCTTGCTGAGAACTGGGGCAACA
CCTTCGACGACGTCGTGTGCCTTAGCGTTGAAGCTTTTGGGAGAAATGGA
CGCCTCCGGCATTCGCGTTTGCGAGCAGTCCCTGTCTCTCGCCATGGCAG
CGTGTCTCGAGGGACACAGGGATGTCCGCTTCCTCGGCAATTTCCCAAGT
CCCCCTGCACGCGAACGCTGGCTGTCGGAGGCGGCGCTGTCGTTGTTTGA
CCGCTTGCTGAGAACTGGGGCAACACCTTCGACGACGTCGTGTGCCTTAG
CGTTGAAGGCATGTGCTCGCACCGGTAATGCGAACCGAGCCTCCTCGTTA
TTCCTTTCTATGATGGACATGATGGACCAACATCCCACCCAAGCCTCTGT
GCGAAACTCCCCACAATCTTCGTCGAAAGTTCTGCAATCCGCCGCTGGAG
GGTCATCGAAACAACGGTCCACCCTCGAGGTACGCTCCTGGCACTTGGCC
AGTGCAATAGCGGCTTATGATGCGGCAGGAGACTGGGTAGGTGCGATGCG
TTTGTGGGAGGAAGCCGTGAGGAGAGGTGTGTTGCCGTGCAGCCCCGGTT
ACAGCGCTGCAATTGCAGCCGCAGCGCGTGCAGGCGACTTGGACGCGGCG
TTCCGGCTGAAACAAGAGGCGGCATGTGCTCGCACCGGTAATGCGAACCG
AGCCTCCTCGTTATTCCTTTCTATGATGGACATGATGGACCAACATCCCA
CCCAAGCCTCTGTGCGAAACTCCCCACAATCTTCGTCGAAAGTTCTGCAA
TCCGCCGCTGGAGGGTCATCGAAACAACGGTCCACCCTCGAGGTACGCTC
CTGGCACTTGGCCAGTGCAATAGCGGCTTATGATGCGGCAGGAGACTGGG
TAGGTGCGATGCGTTTGTGGGAGGAAGCCGTGAGGAGAGGTGTGTTGCCG
TGCAGCCCCGGTTACAGCGCTGCAATTGCAGCCGCAGCGCGTGCAGGCGA
CTTGGACGCGGCGTTCCGGCTGAAACAAGAGGCG
back to top