mRNA_H-fluviatilis_contig10186.437.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10186.437.1
Unique NamemRNA_H-fluviatilis_contig10186.437.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: D7FN59_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN59_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 4.730e-75
Identity = 123/258 (47.67%), Postives = 164/258 (63.57%), Query Frame = 2
Query:   71 SFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFE--DDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVLP 838
            S V   A   GM  N+    E LRV+ PA  + V+++  + V W G + D RFE+DLHY GSYS+ FE  D+CG +  +LC++G+  C           +P+PV G S  GY+V++ +VG   E   CS EFYL S AD +  +G     P++ VV P   +LA AG  YTVEFD+DN +      FKIDLY A+G+GDCG WV+S+CDKPDVGC D+ GDYD++IP+ + GGMY IRVG+F DD+VF CS  FEV+P
Sbjct:    3 SSVAFIAALTGMLGNIITDTEALRVLTPAVAETVVSDMPYIVSWKGASPDDRFEIDLHYCGSYSFCFEEADECGFWVTNLCAEGDDACMNQDDLMSQVTLPEPVDGHSNSGYRVRIGKVGT--ETFRCSDEFYLMSSADASDQDG-----PTMEVVAPSSGALAVAGAVYTVEFDYDNGFGAQQGRFKIDLYHAEGTGDCGDWVSSVCDKPDVGCHDTEGDYDIVIPRDSEGGMYKIRVGLFGDDSVFACSASFEVVP 253          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: A0A6H5KPZ5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ5_9PHAE)

HSP 1 Score: 237 bits (605), Expect = 2.040e-72
Identity = 122/260 (46.92%), Postives = 167/260 (64.23%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDF--EDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEV 832
            ++  +F+ A A  LG   N     E LRV+ PA  + V + R + V W G   D RFEVDLHY GSYS+ F   +DCG +  ++C++ +  C      S     P+PV G S +GY+V+++EVG   +N  CS +FYL + AD  ++E    G P++ VV P  ++LA AGE YTVEFD+DN +      FKIDLYKA+G+GDCG+WVTS+CDKPD+GC DS GDYDV+IP  +  GMY IRVG+F DD+++ CS  FE+
Sbjct:    2 VSSVAFLTALAGVLG---NTITSTEALRVLTPAVAESVASGRPYVVSWQGAQADDRFEVDLHYCGSYSFCFGEAEDCGFWIANVCNEADDACMIQDDQSSQVTFPEPVAGHSNNGYRVRISEVGT--DNFRCSEDFYLVASAD--VLEFGEPGGPTMEVVAPEANALAVAGETYTVEFDYDNGFGEQLGRFKIDLYKAEGNGDCGSWVTSVCDKPDMGCRDSEGDYDVVIPADSEEGMYKIRVGLFGDDSIYACSPSFEI 254          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: D8LEQ9_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEQ9_ECTSI)

HSP 1 Score: 234 bits (598), Expect = 3.330e-71
Identity = 126/263 (47.91%), Postives = 170/263 (64.64%), Query Frame = 2
Query:   77 VMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFED-DCGMFYRHLCSDGE-IGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKA---QGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVLPMPAD 850
            ++A A  LG  T  +   E L+V+ PA  + V++ R + V W+G + D RFE+DLHY GSYSY FE+ +CG +  ++C++G+  GC   +  S     P+P+GG S  GY++++ EVG+  +   CS +FYL S AD   +   G   P+I VV P   +LA AGE YTVEFD+DN +      FKIDLYKA    G+GDCGTWVTS+CDKPDVGC DS GDY+V+IP  +  GMY IRVG+F DDT++ CS  FEV+   AD
Sbjct:    8 LVALAGILGHTTITST--EALQVLTPAVAETVVSGRPYIVSWNGASADDRFEIDLHYCGSYSYCFEEAECGFWLANVCAEGDGSGCMSQADQSSQVTFPEPLGGRSNEGYRIRIAEVGS--DTYRCSDDFYLMSSADAPAVGEDG--GPTIEVVAPTADALAIAGEIYTVEFDYDNGFGEQLGRFKIDLYKALGEDGAGDCGTWVTSVCDKPDVGCLDSQGDYNVVIPTDSEDGMYKIRVGLFGDDTIYACSPSFEVVAAAAD 264          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: A0A6H5JFT9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFT9_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 7.500e-71
Identity = 124/259 (47.88%), Postives = 163/259 (62.93%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVL 835
            M R  FV      LG+A+        L VV PA+GD+V++ R + V WSG   + RFE+DL+Y  S     ED+CG +   LC  GE GC PD+ G +D ++P+P+ G+SG GYKV+V +V    ++S CS EFYL + AD         G P + V +P     A AGEEYTVEFD+DN    +   F IDLY A GSGDCGT++ ++CDKP +GC+DSMGDYDV IP+    GMYTIRVG F D++V+GCS  FE+L
Sbjct:    2 MVRTGFVALACGMLGVASA-------LEVVTPAAGDMVVSSRAYTVEWSGTGSNKRFEIDLYYCNSMC--MEDECGEWVTALCPYGEDGC-PDNEGDYDIVMPEPMSGTSGSGYKVRVADVDDE-DSSDCSDEFYLMAHADAPSASD--AGGPYVTVTSPSTGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYAATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDESVYGCSDEFEIL 247          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: D8LI46_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI46_ECTSI)

HSP 1 Score: 229 bits (584), Expect = 2.860e-69
Identity = 117/233 (50.21%), Postives = 153/233 (65.67%), Query Frame = 2
Query:  137 LRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVL 835
            L VV PA GDIV+A R + V W+G   + R+E+DL+Y GS     ED+CG +   LC  GE GC PD+ G +D ++P+P+ G+SG GYKV+V +V    ++  CS EFYL + A+         G P + V +P     A AGEEYTVEFD+DN    +   F IDLY A GSGDCGT++ ++CDKP +GC+DSMGDYDV IP+    GMYTIRVG F DD+V+GCS  FE+L
Sbjct:    8 LEVVTPAEGDIVVASRAYTVEWTGTGSNNRYEIDLYYCGSMC--MEDECGDWVTALCPYGEDGC-PDNEGDYDIVMPEPMSGTSGSGYKVRVADVDD-DDSGDCSDEFYLMAHAEAP--SAGDAGGPYVTVTSPSSGDSAEAGEEYTVEFDYDNGLGSSVGRFAIDLYSATGSGDCGTFMYTLCDKPTIGCKDSMGDYDVEIPEDAEAGMYTIRVGDFEDDSVYGCSDEFEIL 234          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: D7G3E8_ECTSI (Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3E8_ECTSI)

HSP 1 Score: 212 bits (539), Expect = 7.470e-63
Identity = 116/259 (44.79%), Postives = 160/259 (61.78%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVL 835
            MAR +F       LG A         L VV PA+GD+V+A+  + V W+G     R+++DL+Y GS     ED+CG +   LC  G+ GC PD+ G +D ++P+P+ G+S  GYKV VT+  +   +  CS +F L  +A     +   +G   ++V +P +   A AG EYTVEFD+DN    +   F IDLY + GSGDCGT+VT+ICDKP +GC+DS GDYDV+IP  T  GMY+IRVGVF DD V+GCS  FE++
Sbjct:    1 MARTAFAALAFGMLGAANA-------LEVVSPAAGDMVVADSAYTVEWTGATS-GRYDIDLYYCGSVC--MEDECGDWVTALCPYGDDGC-PDTQGDYDVVMPEPMDGTSS-GYKVMVTD-SSDESDYGCSGDFTL--IASTEAPDATDMGA-YVSVTSPSDGDTAMAGGEYTVEFDYDNGLGSSVNRFAIDLYSSGGSGDCGTYVTTICDKPSIGCKDSQGDYDVVIPSGTESGMYSIRVGVFEDDDVYGCSDSFEIV 243          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: D7FYL2_ECTSI (EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYL2_ECTSI)

HSP 1 Score: 211 bits (537), Expect = 1.680e-62
Identity = 118/259 (45.56%), Postives = 154/259 (59.46%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVL 835
            MAR  FV      LG A         L VV P++  IV+A+R + V W+G +   RFE+DL++ GS     ED CG +   LC  GE GC PD+ G +D ++P+P+ G S  GYKV+V +V +  ++  CS  FYL  +A E   +        + V +P E   A AGEEYTVEFD+DN      + F IDLY A G GDCGT+VTSICDKP +GC+DSMGDYDV IP  T  G Y IRVG F D+ ++GCS  F ++
Sbjct:    1 MARTGFVALACAMLGAANA-------LEVVTPSADLIVVADRTYTVEWTGADS-GRFEIDLYHCGSMC--MEDSCGDWVTALCPYGEEGC-PDNEGDYDIVMPEPMSGESNSGYKVRVMDV-SDEDSMDCSDAFYL--MASEDAPDAGSESGYFLTVTSPAEGDSAEAGEEYTVEFDYDNGVGSKVDRFSIDLYMADGDGDCGTYVTSICDKPSIGCKDSMGDYDVEIPADTEAGDYKIRVGRFEDEELYGCSGTFTIM 245          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: A0A6H5JRG9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRG9_9PHAE)

HSP 1 Score: 210 bits (534), Expect = 6.620e-62
Identity = 121/264 (45.83%), Postives = 157/264 (59.47%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYL------SSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEV 832
            M R  FV      LG A         L+V  P+ G  VIA+R + V W+G + D RFE+DL+Y GS     EDDCG +   LC  GE GC PD+ G +D ++P+P+ G+SG GYKV+V ++    E++ CS EFYL       SV DE   +G     P++ V +P    LA    EYTVEFD+DN    + + F IDLY+A G GDCGT+V SICDKP +GC+DSMGDYDV IP  T  G Y IRV  F DD+++ CS  F +
Sbjct:    1 MTRTGFVALACGMLGAANA-------LKVSTPSKGLTVIADRTYTVEWTGTSSDNRFEIDLYYCGSMC--MEDDCGDWVTALCPYGEDGC-PDNEGDYDIVMPEPMLGTSGSGYKVRVWDI-HDEEDADCSDEFYLLASSEAPSVGDE---DG-----PTLEVTSPASGDLATTCGEYTVEFDYDNGVGSSVDRFAIDLYRADGEGDCGTYVQSICDKPTIGCKDSMGDYDVEIPCDTDAGEYKIRVARFEDDSLYSCSGTFTI 245          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: D7G3F0_ECTSI (EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F0_ECTSI)

HSP 1 Score: 202 bits (515), Expect = 3.020e-59
Identity = 117/261 (44.83%), Postives = 159/261 (60.92%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENS-ACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYK-AQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEVL 835
            MAR +F       LG A         L VV PA+G  VIA+R + V W+G   D+RFE+DL+Y GS+    ED+CG +   LC  G  GC PD+ G +D ++P+P+ G+S  GYKV VT+  +  E+S  CS +F L +  D       G    S+ V +P +   A AG  YTVE+D++N    +T+ F IDLY    G+GDCGT+V ++CDKP +GC DS GDYDV IP  TP GMY++RVGVF+DD +F CS  FE++
Sbjct:    1 MARTAFAALAFGMLGAANA-------LEVVSPAAGISVIADRTYTVEWTG-TSDSRFEIDLYYCGSFC--MEDECGDWVTALCPYGADGC-PDTQGDYDIVMPEPMAGTSS-GYKVVVTD--SNDESSMGCSGDFTLVASTDAPAAGEVGY---SLTVTSPSDGDTAMAGGVYTVEWDYENGLGSSTDRFAIDLYSYGTGTGDCGTYVATLCDKPSIGCPDSQGDYDVEIPSDTPAGMYSVRVGVFSDDMMFDCSEGFEIV 244          
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Match: A0A6H5JY62_9PHAE (GPI-anchored domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JY62_9PHAE)

HSP 1 Score: 195 bits (495), Expect = 2.870e-56
Identity = 114/258 (44.19%), Postives = 156/258 (60.47%), Query Frame = 2
Query:   59 MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSGGNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDALIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGLGTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSGDCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVFGCSVPFEV 832
            MAR +F    A   GM +   A+E    VV P  G  V+A+R + V W+G     RFE+DL+Y  S+  D  D CG +   LC  G  GC PDS+G +D ++P+P+ G+S  GYKV V        +  CS +F L  +A E   E   +G  S+ V +P +   A AGE YTVE+D++N +  +T+ F +DLY   G+GDCGT+VT++CD+P +GC DS GDYDV IP  TP GMY+IRVGVF D+ ++ CS  FEV
Sbjct:    1 MARTAFA---AVAFGMLSAANALE----VVSPDGGISVLADRAYTVEWTGTTT-GRFEIDLYYCNSFCMD--DVCGDWVTALCPYGADGC-PDSAGDYDIIMPEPMSGTSS-GYKVMVKNA-EDESDMGCSDDFTL--IASEDAPEAGEMGY-SLTVTSPSDGDTAMAGEVYTVEWDYENGFGSSTDRFALDLYLVGGTGDCGTYVTTLCDQPSIGCPDSQGDYDVEIPSDTPAGMYSIRVGVFDDEMMYDCSDTFEV 242          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10186.437.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 17
Match NameE-valueIdentityDescription
D7FN59_ECTSI4.730e-7547.67EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5KPZ5_9PHAE2.040e-7246.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LEQ9_ECTSI3.330e-7147.91EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LE... [more]
A0A6H5JFT9_9PHAE7.500e-7147.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI46_ECTSI2.860e-6950.21EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D7G3E8_ECTSI7.470e-6344.79Imm upregulated 4 n=1 Tax=Ectocarpus siliculosus T... [more]
D7FYL2_ECTSI1.680e-6245.56EsV-1-163 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FY... [more]
A0A6H5JRG9_9PHAE6.620e-6245.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3F0_ECTSI3.020e-5944.83EsV-1-163 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A6H5JY62_9PHAE2.870e-5644.19GPI-anchored domain-containing protein n=2 Tax=Ect... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10186contigH-fluviatilis_contig10186:1990..5311 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size1252
Cds size798
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929049.515682-UTR-H-fluviatilis_contig10186:1989..23851622929049.515682-UTR-H-fluviatilis_contig10186:1989..2385Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10186 1990..2385 -
1691135163.5570588-UTR-H-fluviatilis_contig10186:1989..23851691135163.5570588-UTR-H-fluviatilis_contig10186:1989..2385Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10186 1990..2385 -
1622929049.64319-UTR-H-fluviatilis_contig10186:5253..53111622929049.64319-UTR-H-fluviatilis_contig10186:5253..5311Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10186 5254..5311 -
1691135163.6081753-UTR-H-fluviatilis_contig10186:5253..53111691135163.6081753-UTR-H-fluviatilis_contig10186:5253..5311Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10186 5254..5311 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929049.5294673-CDS-H-fluviatilis_contig10186:2385..25221622929049.5294673-CDS-H-fluviatilis_contig10186:2385..2522Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 2386..2522 -
1691135163.564913-CDS-H-fluviatilis_contig10186:2385..25221691135163.564913-CDS-H-fluviatilis_contig10186:2385..2522Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 2386..2522 -
1622929049.5450866-CDS-H-fluviatilis_contig10186:2903..30391622929049.5450866-CDS-H-fluviatilis_contig10186:2903..3039Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 2904..3039 -
1691135163.573177-CDS-H-fluviatilis_contig10186:2903..30391691135163.573177-CDS-H-fluviatilis_contig10186:2903..3039Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 2904..3039 -
1622929049.5969892-CDS-H-fluviatilis_contig10186:3511..38201622929049.5969892-CDS-H-fluviatilis_contig10186:3511..3820Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 3512..3820 -
1691135163.581824-CDS-H-fluviatilis_contig10186:3511..38201691135163.581824-CDS-H-fluviatilis_contig10186:3511..3820Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 3512..3820 -
1622929049.6125193-CDS-H-fluviatilis_contig10186:4293..43841622929049.6125193-CDS-H-fluviatilis_contig10186:4293..4384Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 4294..4384 -
1691135163.5914276-CDS-H-fluviatilis_contig10186:4293..43841691135163.5914276-CDS-H-fluviatilis_contig10186:4293..4384Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 4294..4384 -
1622929049.630407-CDS-H-fluviatilis_contig10186:5128..52531622929049.630407-CDS-H-fluviatilis_contig10186:5128..5253Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 5129..5253 -
1691135163.6005824-CDS-H-fluviatilis_contig10186:5128..52531691135163.6005824-CDS-H-fluviatilis_contig10186:5128..5253Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10186 5129..5253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10186.437.1prot_H-fluviatilis_contig10186.437.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10186 2386..5253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10186.437.1

>prot_H-fluviatilis_contig10186.437.1 ID=prot_H-fluviatilis_contig10186.437.1|Name=mRNA_H-fluviatilis_contig10186.437.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=266bp
MARFSFVMACATTLGMATNVAAVEEVLRVVEPASGDIVIAERYFPVVWSG
GNKDARFEVDLHYMGSYSYDFEDDCGMFYRHLCSDGEIGCSPDSSGSFDA
LIPKPVGGSSGHGYKVKVTEVGAAPENSACSAEFYLSSVADETMMEGWGL
GTPSIAVVTPGEHSLAYAGEEYTVEFDFDNSWEFATELFKIDLYKAQGSG
DCGTWVTSICDKPDVGCEDSMGDYDVLIPQQTPGGMYTIRVGVFADDTVF
GCSVPFEVLPMPADK*
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mRNA from alignment at H-fluviatilis_contig10186:1990..5311-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10186.437.1 ID=mRNA_H-fluviatilis_contig10186.437.1|Name=mRNA_H-fluviatilis_contig10186.437.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=3322bp|location=Sequence derived from alignment at H-fluviatilis_contig10186:1990..5311- (Heribaudiella fluviatilis SAG_13_90)
CAGTCATTGTTGATACTGAAAGCTTGACGACAACATCTGTCCATAGCACT ACGGTAGTATGGCTCGCTTCAGCTTTGTGATGGCTTGTGCTACGACCCTC GGTATGGCGACCAACGTTGCTGCGGTGGAAGAGGTCTTGCGCGTCGTGGA GCCCGCGAGCGGTGACATTGTGATTGCAGAAAGGTCAGCTGGCTTCTTTC CTGTCTTGTGGACGTTGCATCAGCGTGCATCGATCATTTTCTTGACTGCA CGTCTATGAAGTGCTTGTTCGCCCGGGGATACTGTGCGTGCCTCCATGTT TTGCTACGAAATCGACGTCATGATGCTGTCTGATCATGCAGCTTGCCCGT CGAATACTTAGGATCTGCAGGTGGTGATCACTTGTTCGCCCTTGCTCTCA ATAAACGTGCTCGCAGCAGCATAGACCACGAATAACATTTCGCAAATCCA GGTGGCGGGGGATGACACATCCCCTACCTAAATTTTTTGCATCGATTTTC TCAACTATCAAGGCTTCGAAGCTATCGATAATTCCTCCGTTGTGAACAGC GCATCAAGAGCGTTCCCCAAAGGTGGTTCCTCAGCGCTTGCGGTGTACCA CGTTTCGAGAAAGTCGAAGACATCGAACCGAGGGGTGTGTTATCCCCCGT CACCTCCCGTACTTGTATTTTTGCGATGCCATTCGCGATTTTCCCGTTGT TGTGGTTGAATTGCATGTTGCCGTTTTATGGTGCATACAGCGAAGCACTC CAGACATGCTGTTGTCGACTGCAGTTACTTCATTGTACGTCCTCGGACGA GGCGCTGTCACACCAAACTCCTACGTCGCCAACCTTCAAAACACTGACGC TGCGGTGTAATATCCTCTTCGTTGTACCTCGTCCTGTCTAAACTACCAAC TCATGTTGGCGTGGTTCGAGCCCGCAGGTACTTCCCGGTTGTATGGAGCG GTGGCAACAAGGACGCGAGATTCGAAGTCGATTTGCACTACATGGGCTCG TACTCATACGATTTCGAGGCAAGCACTCTTCTCTTGTGTCTTGACTACTA TTAATAGAAGGTGCAACTTGTCACGTGACTAGAGTAGATGCTTGGGGGTA GATCGCCAGAGCTACACCGGAGGCAGCCAACCTTTCTTCAAGCCGCCCAC CGGGTCACAAGCGACCATCTCTCCAAGAAAAAATCGCTTGGTGGGGGGAT TCTTGTAAAATGGCTTTCAGACCACACAAACAAAACAAAACCTAACCCAC CAACGTTCGTCGAGCAGAACCATTCGGCGAAACCTGTTTTGTTCAGATGT GCGTGTGTTTGTCGTCGTCCTTAGTCTCGCACGGTCGTTTTGCCACCTGT ACGGCGCGGCCTGCCCGTACTTCATTCCTAGTGGAGCAACAAAGTCGGCA CTTTGGCTATTGCCCAAACCTGCCATAATATCCTACTCGAACCTCCCCAC CTTCCCACCCAACCCCCTTCACTTTACTTCACCTCTGTCAGGATGACTGC GGGATGTTCTATCGACACCTGTGCTCAGACGGCGAGATAGGTTGCTCGCC GGACTCCTCGGGATCGTTTGACGCACTCATACCGAAGCCAGTGGGAGGGT CGTCCGGGCACGGCTACAAGGTGAAGGTTACCGAAGTCGGCGCTGCCCCG GAAAACTCTGCCTGCTCGGCGGAGTTTTACTTGTCGTCCGTCGCTGACGA GACAATGATGGAAGGGTGGGGATTGGGAACGCCTTCGATCGCCGTGGTGA CCCCCGGGGAGCACTCGTTGGCCTATGCAGGCGAAGAGTACACCGTCGAG GTGAGAACACAAGCGTTTCGATCTCTTTTTTGTCTCGTCTTGTGTATTTG CGCGAGTTTTCTGTACCACGATATTGGATACTCCGGACGAAATTGCGAAA ATAGAACAGATAAGGAGCACCAGGTAGTGACTGACGTCGGATTTGACTCC GTTGTCCGCTCGACCAAATGCGAACTCCAATGTACAACGGGTGTGAGGAA TGTGCAAGAAAAAACGTCCTGGCCCGTGTTACAAACGTACCGAAGGCTCC AAGTGCACACGATGACATCTTGCGCAGCGTTTTCGATCTCACATCGGTGA GATAAGAATGCTCCCCCCAACACAAAAAGCTTCGGACTTCCGCGCACATG CACGGCGGCACAACTTTGTGCGCGCTTTTCCCTACAACGGATACTTAACT CACCTCGCAAGTGCACCATTTCGTTCGGTGCCGATCTTTCTGCGTTCTCA CCTGCCATCTCCTTTTGGCCAGTTCGACTTCGACAACAGTTGGGAATTCG CGACGGAGCTTTTCAAGATCGACCTGTACAAAGCTCAAGGATCTGGTGAC TGCGGCACTTGGGTGACTTCCATATGCGATAAGCCCGATGTTGGCTGCGA AGACTCTAGTGAGTGTGCTTCATTGTCTGTTTTTGGCCCTCCCGACGTCA GATGTTTCAACGCTGTATTTTTTGGGTGACGCTGCCGCTATCTGTGGTGC CGAACGTCACGATCCTGTTTTATTTAGTCTGGTCACTCGCCGCGCGATTT CTGCACTGAAACACGTCGAGAGTCTCTCATCTCAGACATGTGCGTCGGCA CAGACTGTACGTACCAAGACTTGTTGATGGTATGGGGATGTCGGCATGCG ATGTCCGTGCAGATGCAACACTTGCTGAAACATGACTCCTGTGTTGCTGT CCTCACTGTGGCTTAAGCTGATGAAGAGCGATATCCCACTCCGTTCTCAC CCACACCGCGTTTCTCTGCTTCCTGTGTTATCCTTGTAGTGGGAGACTAC GACGTACTCATTCCCCAACAAACGCCGGGAGGAATGTACACGATCCGCGT AGGCGTATTTGCGGATGACACGGTGTTCGGCTGTTCTGTGCCGTTCGAAG TGCTCCCGATGCCGGCGGATAAGTGATCCGAAGACGTGTGGGGTATAAAC TGCAAATGTTTCGCTCTTGCTGTGCCTAGTTCTGTCAAAAATGCCTTCAA TGTTTGTTTTTTCGTCATTGTTGGCCGAGAGCTAGGGGGCATGATAGTGC TTCACGCAGTAAGTAGTTTTTTTGTCTCGAGGTTTCGTCCTTGACTTTCT GAGGCCTTGCGCAGCAGGAGGAAGTTTACTGGCAGTACTCCAGCGTTTTG CAATGTGGTCGTAAAATATGTGTTGTCGTGTCGTATGTGACCAAAGTTGA GAGCTTACACAACGATCGACGAGTAGGAATGATGTCGACATGGGCCGTGC ACGTTCCGCCCATCGATACTTGTATGGGGGTCACAATCGACGATGTTGGT TATGAAAGGGAATATTTGGGGG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10186:1990..5311-

>mRNA_H-fluviatilis_contig10186.437.1 ID=mRNA_H-fluviatilis_contig10186.437.1|Name=mRNA_H-fluviatilis_contig10186.437.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1596bp|location=Sequence derived from alignment at H-fluviatilis_contig10186:1990..5311- (Heribaudiella fluviatilis SAG_13_90)
ATGGCTCGCTTCAGCTTTGTGATGGCTTGTGCTACGACCCTCGGTATGGC
GACCAACGTTGCTGCGGTGGAAGAGGTCTTGCGCGTCGTGGAGCCCGCGA
GCGGTGACATTGTGATTGCAGAAAGATGGCTCGCTTCAGCTTTGTGATGG
CTTGTGCTACGACCCTCGGTATGGCGACCAACGTTGCTGCGGTGGAAGAG
GTCTTGCGCGTCGTGGAGCCCGCGAGCGGTGACATTGTGATTGCAGAAAG
GTACTTCCCGGTTGTATGGAGCGGTGGCAACAAGGACGCGAGATTCGAAG
TCGATTTGCACTACATGGGCTCGTACTCATACGATTTCGAGGTACTTCCC
GGTTGTATGGAGCGGTGGCAACAAGGACGCGAGATTCGAAGTCGATTTGC
ACTACATGGGCTCGTACTCATACGATTTCGAGGATGACTGCGGGATGTTC
TATCGACACCTGTGCTCAGACGGCGAGATAGGTTGCTCGCCGGACTCCTC
GGGATCGTTTGACGCACTCATACCGAAGCCAGTGGGAGGGTCGTCCGGGC
ACGGCTACAAGGTGAAGGTTACCGAAGTCGGCGCTGCCCCGGAAAACTCT
GCCTGCTCGGCGGAGTTTTACTTGTCGTCCGTCGCTGACGAGACAATGAT
GGAAGGGTGGGGATTGGGAACGCCTTCGATCGCCGTGGTGACCCCCGGGG
AGCACTCGTTGGCCTATGCAGGCGAAGAGTACACCGTCGAGGATGACTGC
GGGATGTTCTATCGACACCTGTGCTCAGACGGCGAGATAGGTTGCTCGCC
GGACTCCTCGGGATCGTTTGACGCACTCATACCGAAGCCAGTGGGAGGGT
CGTCCGGGCACGGCTACAAGGTGAAGGTTACCGAAGTCGGCGCTGCCCCG
GAAAACTCTGCCTGCTCGGCGGAGTTTTACTTGTCGTCCGTCGCTGACGA
GACAATGATGGAAGGGTGGGGATTGGGAACGCCTTCGATCGCCGTGGTGA
CCCCCGGGGAGCACTCGTTGGCCTATGCAGGCGAAGAGTACACCGTCGAG
TTCGACTTCGACAACAGTTGGGAATTCGCGACGGAGCTTTTCAAGATCGA
CCTGTACAAAGCTCAAGGATCTGGTGACTGCGGCACTTGGGTGACTTCCA
TATGCGATAAGCCCGATGTTGGCTGCGAAGACTCTATTCGACTTCGACAA
CAGTTGGGAATTCGCGACGGAGCTTTTCAAGATCGACCTGTACAAAGCTC
AAGGATCTGGTGACTGCGGCACTTGGGTGACTTCCATATGCGATAAGCCC
GATGTTGGCTGCGAAGACTCTATGGGAGACTACGACGTACTCATTCCCCA
ACAAACGCCGGGAGGAATGTACACGATCCGCGTAGGCGTATTTGCGGATG
ACACGGTGTTCGGCTGTTCTGTGCCGTTCGAAGTGCTCCCGATGCCGGCG
GATAAGTGATGGGAGACTACGACGTACTCATTCCCCAACAAACGCCGGGA
GGAATGTACACGATCCGCGTAGGCGTATTTGCGGATGACACGGTGTTCGG
CTGTTCTGTGCCGTTCGAAGTGCTCCCGATGCCGGCGGATAAGTGA
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