mRNA_H-fluviatilis_contig101829.433.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101829.433.1
Unique NamemRNA_H-fluviatilis_contig101829.433.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A6H5JU07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU07_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 4.330e-39
Identity = 64/92 (69.57%), Postives = 79/92 (85.87%), Query Frame = 1
Query:   22 SQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
             Q+PDPVIEQF PTR VLWR+W+GT+LE+TW +T+ NM VAL+VCL  +R +V YP+LS QL K+DIIWKI MTLTTFILTFFV+Q+YA+WR
Sbjct:   22 EQIPDPVIEQFVPTRAVLWRKWKGTMLEDTWEATMLNMVVALVVCLAYQRLQVSYPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 113          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: D8LQV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQV7_ECTSI)

HSP 1 Score: 140 bits (354), Expect = 1.140e-37
Identity = 62/91 (68.13%), Postives = 79/91 (86.81%), Query Frame = 1
Query:   25 QVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            ++PDPVIEQF PTR VLWR+W+GT+LE+TW +T+ NMGVAL+VCL  +R ++  P+LS QL K+DIIWKI MTLTTFILTFFV+Q+YA+WR
Sbjct:   22 EIPDPVIEQFVPTRAVLWRKWKGTMLEDTWEATVLNMGVALVVCLAYQRLQLSCPRLSEQLFKIDIIWKIHMTLTTFILTFFVSQSYAMWR 112          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A7S2XP54_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XP54_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 3.750e-17
Identity = 40/99 (40.40%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +    P++ QF+P+   +WRRW GT+  ETWR+ L NM  A ++ L  + +    PQ    L   +I+W   +++TTF LTFF+NQ+YALWR
Sbjct:  155 LIDESVRTSARKPIMMQFDPSSGYIWRRWSGTVFSETWRTCLGNMLYATIIALFYKAN----PQFRESLTGFNILWGQLLSVTTFTLTFFLNQSYALWR 249          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: B8CD25_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD25_THAPS)

HSP 1 Score: 83.2 bits (204), Expect = 1.830e-16
Identity = 43/99 (43.43%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +   +PV+ QF P R  +WR+WRGT+  ETW+S L NM +A  V +G       YP L  +L    I+W   +++TTF LTFF+NQ+Y LWR
Sbjct:  361 LIDESVRTSSRNPVMMQFNPKRGWIWRQWRGTVFSETWKSGLMNMVLATCV-VGLYG---VYPNLKDKLQGFSILWGQLLSVTTFTLTFFLNQSYGLWR 455          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: K0TF44_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TF44_THAOC)

HSP 1 Score: 82.4 bits (202), Expect = 3.380e-16
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCL--GCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +    PV+ QF P R  +WR+WRGT+  ETW+S L NM ++ LV    G +      P+L   L    I+W   +++TTF LTFF+NQ+Y LWR
Sbjct:  198 LIDESVRTSARQPVMMQFNPKRGWIWRQWRGTVFSETWKSGLRNMALSTLVVFLYGAQ------PKLKDLLQGFSILWGQLLSVTTFTLTFFLNQSYGLWR 292          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A1Z5K7E8_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K7E8_FISSO)

HSP 1 Score: 81.6 bits (200), Expect = 6.250e-16
Identity = 42/100 (42.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLK-VDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +    P++ QF+P+   +W+RW+GTI  ETW S +  M  A LV + CR     YP    + L    I+W   +++TTF LTFFVNQ+YALWR
Sbjct:   22 LIDESVRTSARRPIMMQFDPSSGWIWKRWKGTIFSETWDSCVAKMVYACLVFVLCRT----YPSTVKETLSGFHILWGQLLSVTTFTLTFFVNQSYALWR 117          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A7S3QDY6_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QDY6_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 8.350e-16
Identity = 39/99 (39.39%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +   +PV+ QF+P+   +WRRW+GTI  ETWR  +TN+ +A ++      + V + Q    L   +I+W   +++TTF LTFF+NQ+Y LWR
Sbjct:  155 LIDESVRTAARNPVMMQFDPSSGWIWRRWKGTIFSETWRRAVTNICIATVIWTMLSYNRVTFLQ---NLSGFNILWGQLLSVTTFTLTFFLNQSYTLWR 250          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A1Z5KAA7_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAA7_FISSO)

HSP 1 Score: 81.3 bits (199), Expect = 8.530e-16
Identity = 41/100 (41.00%), Postives = 59/100 (59.00%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLK-VDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +    P++ QF+P+   +W+RW+GTI  ETW S +  M  A L+ + CR     YP    + L    I+W   +++TTF LTFFVNQ+YALWR
Sbjct:   22 LIDESVRTSARRPIMMQFDPSSGWIWKRWKGTIFSETWDSCVAKMVYACLIFVLCRT----YPSTVKETLSGFHILWGQLLSVTTFTLTFFVNQSYALWR 117          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A7S2WCN8_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WCN8_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 7.330e-15
Identity = 36/99 (36.36%), Postives = 60/99 (60.61%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   +    P++ QF+P+   +WRRW+GT+  ETW S + N+  A ++ +  +    ++  L+      +I+W   +++TTF LTFFVNQ+YALWR
Sbjct:  223 LIDESVRTNARKPIMMQFDPSSGWIWRRWKGTVFCETWTSCVRNILYATVIAIFYKARPSFWESLTG----FNILWGQLLSITTFTLTFFVNQSYALWR 317          
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Match: A0A7S2EN81_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EN81_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.390e-14
Identity = 36/99 (36.36%), Postives = 59/99 (59.60%), Query Frame = 1
Query:    1 MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALLVCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWR 297
            +I E   ++   P++ QF+P+   +WRRWRGTI  ETW++ + NM +A +V +       +   +       +I+W   +++TTF LTFF+N +YALWR
Sbjct:  116 LIDESVRTKSRKPIMRQFDPSSGWIWRRWRGTIFSETWKTCVKNMFIATIVTIVFHNCAPFREAVKG----FNILWGQLLSVTTFTLTFFLNVSYALWR 210          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101829.433.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JU07_9PHAE4.330e-3969.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQV7_ECTSI1.140e-3768.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2XP54_9STRA3.750e-1740.40Hypothetical protein n=2 Tax=Attheya septentrional... [more]
B8CD25_THAPS1.830e-1643.43Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
K0TF44_THAOC3.380e-1641.58Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A1Z5K7E8_FISSO6.250e-1642.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S3QDY6_9STRA8.350e-1639.39Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A1Z5KAA7_FISSO8.530e-1641.00Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S2WCN8_9STRA7.330e-1536.36Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2EN81_9STRA1.390e-1436.36Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101829contigH-fluviatilis_contig101829:7..824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score140.6
Seed ortholog evalue4.1e-31
Seed eggNOG ortholog2880.D8LQV7
EggNOG free text desc.Bestrophin, RFP-TM, chloride channel
EggNOG OGs2BKDA@1,2S1IE@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929049.1371248-CDS-H-fluviatilis_contig101829:6..881622929049.1371248-CDS-H-fluviatilis_contig101829:6..88Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101829 7..88 -
1691135163.405754-CDS-H-fluviatilis_contig101829:6..881691135163.405754-CDS-H-fluviatilis_contig101829:6..88Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101829 7..88 -
1622929049.1496058-CDS-H-fluviatilis_contig101829:603..8241622929049.1496058-CDS-H-fluviatilis_contig101829:603..824Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101829 604..824 -
1691135163.4152448-CDS-H-fluviatilis_contig101829:603..8241691135163.4152448-CDS-H-fluviatilis_contig101829:603..824Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101829 604..824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101829.433.1prot_H-fluviatilis_contig101829.433.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101829 7..824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101829.433.1

>prot_H-fluviatilis_contig101829.433.1 ID=prot_H-fluviatilis_contig101829.433.1|Name=mRNA_H-fluviatilis_contig101829.433.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=101bp
MIIECFPSQVPDPVIEQFEPTRDVLWRRWRGTILEETWRSTLTNMGVALL
VCLGCRRSEVYYPQLSSQLLKVDIIWKIQMTLTTFILTFFVNQAYALWRT
*
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mRNA from alignment at H-fluviatilis_contig101829:7..824-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101829.433.1 ID=mRNA_H-fluviatilis_contig101829.433.1|Name=mRNA_H-fluviatilis_contig101829.433.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=818bp|location=Sequence derived from alignment at H-fluviatilis_contig101829:7..824- (Heribaudiella fluviatilis SAG_13_90)
ATGATCATCGAATGCTTTCCGTCTCAGGTGCCAGACCCAGTAATAGAGCA GTTCGAGCCGACTCGAGACGTTTTGTGGCGAAGATGGAGGGGTACAATCC TTGAGGAGACTTGGAGGTCGACGCTGACGAACATGGGCGTGGCGCTGTTG GTGTGTCTGGGTTGCCGACGGTCGGAGGTATATTACCCTCAGCTCAGCTC CCAACTGCTTAAAGTCGACATGTGAGTCTGCCGCACCGTACAGTGTTGCG CATGACATGACGGTGGGAAACAGGAAGCTTTTCCCGCAATTATTTGTACA GCGATATAGGACGGAGGCTGCAGGTCGAATAACAAAACCGGAACAGGCGG CAAGCCTGCGCCTGAGTATACTGTATTTGGTTCGACCTCGTACGCCTTGT GATAAGCACGTAGCCCTCGAATGATCAAAACCGAATTTGACGAACAATTC CCATCGGTTAACCGATACCGATTAACGTTCCGAGAAGCACCAAGATTCCT CGCCATTCTATTCTGCTCGGCGCTGACGGGGGTGTCGTAGGTGGACTCTT ACGCTAGCGGCTTCGGTGCCACACTTCATGGCTAGTGTGCTCCACCCCCC CTGCCCCCCGCCCCGCTTCCCCGCCACCTCTCCCTCGTCTACCACCGACC CGCTCACCCCAAATGACGTCAACCCCTCCCCCCTCGGTTCATCGACCGAC CTCTCTTGTTGCCCTCTTGCTATGCTTGCGGTGTAGAATTTGGAAGATCC AGATGACCCTGACGACTTTCATCCTCACGTTCTTCGTCAACCAGGCCTAC GCGCTGTGGCGCACGTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101829:7..824-

>mRNA_H-fluviatilis_contig101829.433.1 ID=mRNA_H-fluviatilis_contig101829.433.1|Name=mRNA_H-fluviatilis_contig101829.433.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=606bp|location=Sequence derived from alignment at H-fluviatilis_contig101829:7..824- (Heribaudiella fluviatilis SAG_13_90)
ATGATCATCGAATGCTTTCCGTCTCAGGTGCCAGACCCAGTAATAGAGCA
GTTCGAGCCGACTCGAGACGTTTTGTGGCGAAGATGGAGGGGTACAATCC
TTGAGGAGACTTGGAGGTCGACGCTGACGAACATGGGCGTGGCGCTGTTG
GTGTGTCTGGGTTGCCGACGGTCGGAGGTATATTACCCTCAGCTCAGCTC
CCAACTGCTTAAAGTCGACATATGATCATCGAATGCTTTCCGTCTCAGGT
GCCAGACCCAGTAATAGAGCAGTTCGAGCCGACTCGAGACGTTTTGTGGC
GAAGATGGAGGGGTACAATCCTTGAGGAGACTTGGAGGTCGACGCTGACG
AACATGGGCGTGGCGCTGTTGGTGTGTCTGGGTTGCCGACGGTCGGAGGT
ATATTACCCTCAGCTCAGCTCCCAACTGCTTAAAGTCGACATAATTTGGA
AGATCCAGATGACCCTGACGACTTTCATCCTCACGTTCTTCGTCAACCAG
GCCTACGCGCTGTGGCGCACGTGAAATTTGGAAGATCCAGATGACCCTGA
CGACTTTCATCCTCACGTTCTTCGTCAACCAGGCCTACGCGCTGTGGCGC
ACGTGA
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