mRNA_H-fluviatilis_contig10134.343.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10134.343.1
Unique NamemRNA_H-fluviatilis_contig10134.343.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A6H5JF91_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JF91_9PHAE)

HSP 1 Score: 163 bits (413), Expect = 6.430e-45
Identity = 78/103 (75.73%), Postives = 89/103 (86.41%), Query Frame = 1
Query:    1 VRDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            VRD H D GA+LLGLGTFAA+E PVNT LRA+KLFPGPHLYAGA +VVA  VAASLVP+MQKG+DTAR+A + I+FGMIALFAWQ+FTG  I  KVWEFTK+P
Sbjct:  244 VRDLHYDAGALLLGLGTFAAVEGPVNTYLRAQKLFPGPHLYAGAAVVVAWAVAASLVPKMQKGDDTARIAHMAINFGMIALFAWQIFTGIPIAQKVWEFTKFP 346          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A835YJX9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJX9_9STRA)

HSP 1 Score: 150 bits (380), Expect = 9.160e-41
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 1
Query:    1 VRDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            VRD+H ++G+++LGLG FAAIE PVNT +RA KLFPGPHLYAGAGIVVA  +AASLV QMQKGN+ ARLA IGI+FG++  FAWQ+ TG  I  KV EFTKWP
Sbjct:  175 VRDKHYEVGSLILGLGVFAAIEGPVNTYIRAGKLFPGPHLYAGAGIVVAWGIAASLVQQMQKGNEWARLAHIGINFGILGFFAWQVNTGLGITAKVLEFTKWP 277          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: I0Z2R7_COCSC (Uncharacterized protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z2R7_COCSC)

HSP 1 Score: 134 bits (337), Expect = 3.970e-35
Identity = 66/102 (64.71%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    4 RDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            RD+H + G++LLGLG   AIE PVNT LR  KLFPGPHLYAGA IVV    A++LVP MQKGNDTAR   I ++   +ALFAWQ+ TGFEIV KVWEF  WP
Sbjct:  110 RDKHWNWGSLLLGLGVLIAIEGPVNTYLRTGKLFPGPHLYAGAAIVVLWASASALVPSMQKGNDTARNTHIALNTLNLALFAWQVPTGFEIVQKVWEFAPWP 211          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A8J9WRZ6_9CHLO (Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9WRZ6_9CHLO)

HSP 1 Score: 135 bits (341), Expect = 4.840e-35
Identity = 67/102 (65.69%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    4 RDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            RD+H + G++LLGLG   AIE P NT LR  KLFPGPHLYAGA IVV    AASLVP MQKGNDTAR   I ++   +ALFAWQ+ TGFEIV KVWEF  WP
Sbjct:  170 RDKHWNWGSLLLGLGVLIAIEGPANTYLRTGKLFPGPHLYAGAAIVVLWAAAASLVPAMQKGNDTARNTHIALNAVNLALFAWQVPTGFEIVQKVWEFAPWP 271          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A8J5XE69_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XE69_DIALT)

HSP 1 Score: 132 bits (331), Expect = 1.800e-33
Identity = 64/102 (62.75%), Postives = 78/102 (76.47%), Query Frame = 1
Query:    1 VRDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKW 306
            +RD H  +G+ LLGLGT  AIE PVNT +RA KLFPGPHLYAGAG VV   +AA+L PQMQKG+DTAR+A IG++   +ALF WQL +G+EI+ KVWE   W
Sbjct:  179 LRDTHWALGSTLLGLGTSFAIEGPVNTFMRAGKLFPGPHLYAGAGCVVFWALAAALTPQMQKGSDTARVAHIGLNSAGLALFTWQLVSGWEILSKVWEKVPW 280          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A7S0P6S8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P6S8_9EUKA)

HSP 1 Score: 130 bits (328), Expect = 5.230e-33
Identity = 63/103 (61.17%), Postives = 81/103 (78.64%), Query Frame = 1
Query:    1 VRDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            +RD+H  +G+V+LGLGT  AIE PVNT LRA+KLFPGPHLYAGAG+VV+  +AASLVP M KG ++AR+A I  +   + LF WQL TG+EI +KV +FTK+P
Sbjct:  180 LRDKHYQVGSVILGLGTSFAIEGPVNTFLRAQKLFPGPHLYAGAGVVVSWAMAASLVPLMSKGKESARIAHIAFNSLALGLFTWQLPTGWEITLKVIKFTKFP 282          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A7S2PXB9_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PXB9_9STRA)

HSP 1 Score: 125 bits (315), Expect = 5.850e-33
Identity = 61/102 (59.80%), Postives = 73/102 (71.57%), Query Frame = 1
Query:    4 RDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            RD+H   GA+L  +GT  AIE P+NT  RA KLFPGPHLYAGAG+VV   +AAS+VP MQKGND AR   IG +   I LF WQ+ +G  I++KV EFTKWP
Sbjct:   21 RDKHFSQGALLAFIGTAFAIEGPLNTYARAGKLFPGPHLYAGAGLVVLWALAASMVPAMQKGNDAARTVHIGANLAGIGLFGWQVTSGIPILLKVVEFTKWP 122          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A7S2DBY3_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2DBY3_9EUKA)

HSP 1 Score: 128 bits (321), Expect = 1.750e-32
Identity = 64/102 (62.75%), Postives = 77/102 (75.49%), Query Frame = 1
Query:    4 RDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            RD+H  +G+V+LGLGT  AIE PVNT LRA+KLFPGPHLYAGAGIVV   +AASLVP M KG D AR   I  +   + LF WQL TG+EI++KV +FTK+P
Sbjct:  133 RDKHYQVGSVVLGLGTSFAIEGPVNTFLRAQKLFPGPHLYAGAGIVVCWAMAASLVPLMAKGQDAARNGHIAFNVLALGLFTWQLPTGWEILLKVIKFTKFP 234          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: B8BZ55_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZ55_THAPS)

HSP 1 Score: 127 bits (319), Expect = 1.790e-32
Identity = 61/102 (59.80%), Postives = 76/102 (74.51%), Query Frame = 1
Query:    4 RDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            RD+H + G++LL +G   AIE P+NT  RA KLFPGPHLYAGAG+VV   +AAS+VP MQKGNDTAR   IG +   + LFAWQ+ +G  I++KV EFTKWP
Sbjct:  108 RDKHFNQGSLLLFIGIAFAIEGPLNTYARAGKLFPGPHLYAGAGLVVLWALAASMVPAMQKGNDTARTVHIGANVAGLGLFAWQVTSGIPILLKVLEFTKWP 209          
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Match: A0A061SCV0_9CHLO (Uncharacterized protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SCV0_9CHLO)

HSP 1 Score: 129 bits (324), Expect = 2.230e-32
Identity = 64/102 (62.75%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    4 RDRHNDMGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLVPQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP 309
            RDRHN  G+ LLGLG   +IE  +NT LR  KLFPGPHL+AGAGI V   +AASLVP MQKGNDTAR   I ++   I LFAWQL TGF+IV+KV++F  WP
Sbjct:  185 RDRHNYWGSALLGLGVLLSIEGGLNTYLRVGKLFPGPHLFAGAGITVLWALAASLVPAMQKGNDTARSLHIALNTVNIGLFAWQLPTGFDIVLKVFKFAPWP 286          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10134.343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JF91_9PHAE6.430e-4575.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YJX9_9STRA9.160e-4169.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
I0Z2R7_COCSC3.970e-3564.71Uncharacterized protein n=1 Tax=Coccomyxa subellip... [more]
A0A8J9WRZ6_9CHLO4.840e-3565.69Uncharacterized protein n=1 Tax=Coccomyxa sp. Obi ... [more]
A0A8J5XE69_DIALT1.800e-3362.75Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S0P6S8_9EUKA5.230e-3361.17Hypothetical protein n=1 Tax=Calcidiscus leptoporu... [more]
A0A7S2PXB9_9STRA5.850e-3359.80Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S2DBY3_9EUKA1.750e-3262.75Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
B8BZ55_THAPS1.790e-3259.80Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A061SCV0_9CHLO2.230e-3262.75Uncharacterized protein n=1 Tax=Tetraselmis sp. GS... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10134contigH-fluviatilis_contig10134:891..1983 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.4
Seed ortholog evalue6.9e-36
Seed eggNOG ortholog2880.D7FR78
EggNOG free text desc.Protein of unknown function (DUF4079)
EggNOG OGs28KJR@1,2QT15@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size789
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10134.343.1prot_H-fluviatilis_contig10134.343.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10134 912..1506 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.1086657-UTR-H-fluviatilis_contig10134:890..9111622929036.1086657-UTR-H-fluviatilis_contig10134:890..911Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10134 891..911 +
1691135158.4014378-UTR-H-fluviatilis_contig10134:890..9111691135158.4014378-UTR-H-fluviatilis_contig10134:890..911Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10134 891..911 +
1622929036.150593-UTR-H-fluviatilis_contig10134:1506..19831622929036.150593-UTR-H-fluviatilis_contig10134:1506..1983Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10134 1507..1983 +
1691135158.4266293-UTR-H-fluviatilis_contig10134:1506..19831691135158.4266293-UTR-H-fluviatilis_contig10134:1506..1983Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10134 1507..1983 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929036.121202-CDS-H-fluviatilis_contig10134:911..11451622929036.121202-CDS-H-fluviatilis_contig10134:911..1145Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10134 912..1145 +
1691135158.4117186-CDS-H-fluviatilis_contig10134:911..11451691135158.4117186-CDS-H-fluviatilis_contig10134:911..1145Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10134 912..1145 +
1622929036.1371403-CDS-H-fluviatilis_contig10134:1449..15061622929036.1371403-CDS-H-fluviatilis_contig10134:1449..1506Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10134 1450..1506 +
1691135158.418675-CDS-H-fluviatilis_contig10134:1449..15061691135158.418675-CDS-H-fluviatilis_contig10134:1449..1506Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10134 1450..1506 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10134.343.1

>prot_H-fluviatilis_contig10134.343.1 ID=prot_H-fluviatilis_contig10134.343.1|Name=mRNA_H-fluviatilis_contig10134.343.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=97bp
MGAVLLGLGTFAAIERPVNTLLRAEKLFPGPHLYAGAGIVVACKVAASLV
PQMQKGNDTARLAQIGISFGMIALFAWQLFTGFEIVVKVWEFTKWP*
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mRNA from alignment at H-fluviatilis_contig10134:891..1983+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10134.343.1 ID=mRNA_H-fluviatilis_contig10134.343.1|Name=mRNA_H-fluviatilis_contig10134.343.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1093bp|location=Sequence derived from alignment at H-fluviatilis_contig10134:891..1983+ (Heribaudiella fluviatilis SAG_13_90)
GTACGCGACCGTCACAACGACATGGGAGCGGTCCTGCTCGGACTCGGAAC GTTTGCGGCGATCGAACGCCCCGTAAATACATTGTTGCGCGCGGAGAAGC TTTTCCCGGGACCGCACTTGTATGCAGGGGCGGGTATCGTTGTAGCGTGT AAGGTGGCGGCGTCTCTGGTGCCTCAAATGCAGAAGGGAAATGACACCGC CCGACTCGCGCAGATTGGCATCAGCTTCGGCATGATTGCTCTTTTCGCCT GGCAGGTGAGCGCAGAGTGCAGGATGGAAGGAAGAGGCGGGTGATTTTTT TTGTTTCCCAGAGGGCCAAGGGTGTAGTGCGGCAAGAATACGCCACCGTG TCGAAAGGAGCGAACGAAAGCAATCGGCTTTTGTTTTCGATCGTATGAGG AGATTTGCCACACACCGCCTGGAACGTGTGTCCCGAAAATGTTGCATGCT TTGACGTTCAACTTTTCAATCTCACAAGTCTACCACTGTTGTCTTGTCCT CACGCTGCCCCAATGCCTGCGTTACACTTCGTTATGTGCCCCTCCCACGC CTGCTGCAGCTGTTTACTGGCTTTGAGATCGTTGTGAAGGTTTGGGAGTT CACCAAGTGGCCTTGAGCGCACTTGGCAAATTAATTCAGACGTCGACCGG TACTATTTGTCAGCTTGTTTCAATCCGTCGGTCACGCGGGGTGGTCAACA CTTGACCGTGAAGAAGAAACAGAAAAGAGCCCATCGCCTTCCAGGAACCA TGTTGCTATTGGGACGATCAAGATAATGACCCATATTGGTTATTCTGGCC GTTTTCTCGCAGACATCAGTAGCGTGAGAGACGTGTGATCCCGGTGTTGC GGCCAAGTCGACCGCGTATGCTTGGTCCGGAGCTGAAGGGCGTGCTCCAG CGAACCTTTGTTTCGGCTGCTGCACCCTGTAGTGTCCAATAGTGATGTTT TTCTCGGTTTGCTTGTTCAAACGAAGGCTAGTAAAACGATTCGACCGCTC TTGGTAGGTGACTTCTGTGGGAGAGATTTCTGTTCTACGTGTTGCGGTGA CTTCGGCGTGCATTTTTTGTCCGCCTGATAAAGTATACGGCCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10134:891..1983+

>mRNA_H-fluviatilis_contig10134.343.1 ID=mRNA_H-fluviatilis_contig10134.343.1|Name=mRNA_H-fluviatilis_contig10134.343.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=582bp|location=Sequence derived from alignment at H-fluviatilis_contig10134:891..1983+ (Heribaudiella fluviatilis SAG_13_90)
ATGGGAGCGGTCCTGCTCGGACTCGGAACGTTTGCGGCGATCGAACGCCC
CGTAAATACATTGTTGCGCGCGGAGAAGCTTTTCCCGGGACCGCACTTGT
ATGCAGGGGCGGGTATCGTTGTAGCGTGTAAGGTGGCGGCGTCTCTGGTG
CCTCAAATGCAGAAGGGAAATGACACCGCCCGACTCGCGCAGATTGGCAT
CAGCTTCGGCATGATTGCTCTTTTCGCCTGGCAGATGGGAGCGGTCCTGC
TCGGACTCGGAACGTTTGCGGCGATCGAACGCCCCGTAAATACATTGTTG
CGCGCGGAGAAGCTTTTCCCGGGACCGCACTTGTATGCAGGGGCGGGTAT
CGTTGTAGCGTGTAAGGTGGCGGCGTCTCTGGTGCCTCAAATGCAGAAGG
GAAATGACACCGCCCGACTCGCGCAGATTGGCATCAGCTTCGGCATGATT
GCTCTTTTCGCCTGGCAGCTGTTTACTGGCTTTGAGATCGTTGTGAAGGT
TTGGGAGTTCACCAAGTGGCCTTGACTGTTTACTGGCTTTGAGATCGTTG
TGAAGGTTTGGGAGTTCACCAAGTGGCCTTGA
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