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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Model size | 421 |
| Cds size | 417 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929035.4960654-UTR-H-fluviatilis_contig101293:113..116 | 1622929035.4960654-UTR-H-fluviatilis_contig101293:113..116 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig101293 114..116 + |
| 1691135158.1347437-UTR-H-fluviatilis_contig101293:113..116 | 1691135158.1347437-UTR-H-fluviatilis_contig101293:113..116 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig101293 114..116 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929035.515134-CDS-H-fluviatilis_contig101293:116..140 | 1622929035.515134-CDS-H-fluviatilis_contig101293:116..140 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 117..140 + |
| 1691135158.1442077-CDS-H-fluviatilis_contig101293:116..140 | 1691135158.1442077-CDS-H-fluviatilis_contig101293:116..140 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 117..140 + |
| 1622929035.5406158-CDS-H-fluviatilis_contig101293:171..213 | 1622929035.5406158-CDS-H-fluviatilis_contig101293:171..213 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 172..213 + |
| 1691135158.1555982-CDS-H-fluviatilis_contig101293:171..213 | 1691135158.1555982-CDS-H-fluviatilis_contig101293:171..213 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 172..213 + |
| 1622929035.5564647-CDS-H-fluviatilis_contig101293:250..326 | 1622929035.5564647-CDS-H-fluviatilis_contig101293:250..326 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 251..326 + |
| 1691135158.1715963-CDS-H-fluviatilis_contig101293:250..326 | 1691135158.1715963-CDS-H-fluviatilis_contig101293:250..326 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 251..326 + |
| 1622929035.5749846-CDS-H-fluviatilis_contig101293:356..631 | 1622929035.5749846-CDS-H-fluviatilis_contig101293:356..631 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 357..631 + |
| 1691135158.1794624-CDS-H-fluviatilis_contig101293:356..631 | 1691135158.1794624-CDS-H-fluviatilis_contig101293:356..631 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101293 357..631 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig101293.336.1 >prot_H-fluviatilis_contig101293.336.1 ID=prot_H-fluviatilis_contig101293.336.1|Name=mRNA_H-fluviatilis_contig101293.336.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=139bp
MDALAYEAVRKEIKASRLNQDQESRLHHEVSISPSFVDLLQLKSIIQRVP
LGVFNASAKQNHTGWVSQWPVGDERSSQKQPDHERGRREKSRGPDQSRSR
RGGANSDNDVDSSPYDTEPLFRTNNPPLPELKPVEIDIE back to topmRNA from alignment at H-fluviatilis_contig101293:114..631+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig101293.336.1 ID=mRNA_H-fluviatilis_contig101293.336.1|Name=mRNA_H-fluviatilis_contig101293.336.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=518bp|location=Sequence derived from alignment at H-fluviatilis_contig101293:114..631+ (Heribaudiella fluviatilis SAG_13_90)
CGCATGGATGCCCTGGCGTACGAAGCAGTAGGATCATGTTGCTTTGACGC
GCGCGAAGGTTCGAAAGGAGATCAAGGCATCCAGGCTCAACCAAGACCAG
GTAATTCCATCTAGTATGTCCTGTGATATTCCATTAGGAGTCGCGTCTTC
ATCATGAAGTCAGCATCAGTCCCTCGTTTGTGGACTTGCTCCAGTTGAAG
TCTATCATTCAGCGTAACAACGCAACTGTTGTCAACCTCCCAGGTGTACC
GCTTGGAGTGTTCAATGCCAGTGCAAAGCAGAATCACACTGGTTGGGTGA
GCCAGTGGCCAGTTGGAGACGAACGGAGTTCGCAGAAGCAGCCAGACCAC
GAGCGCGGCAGGCGCGAGAAGAGCCGTGGACCAGACCAATCGCGCAGTAG
GCGCGGGGGTGCCAACTCAGATAACGATGTCGATTCTTCTCCCTATGACA
CTGAACCCCTGTTCCGGACCAACAACCCACCGTTGCCCGAACTCAAGCCG
GTTGAGATCGACATAGAG back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig101293:114..631+ >mRNA_H-fluviatilis_contig101293.336.1 ID=mRNA_H-fluviatilis_contig101293.336.1|Name=mRNA_H-fluviatilis_contig101293.336.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=834bp|location=Sequence derived from alignment at H-fluviatilis_contig101293:114..631+ (Heribaudiella fluviatilis SAG_13_90)
ATGGATGCCCTGGCGTACGAAGCAATGGATGCCCTGGCGTACGAAGCAGT
TCGAAAGGAGATCAAGGCATCCAGGCTCAACCAAGACCAGGTTCGAAAGG
AGATCAAGGCATCCAGGCTCAACCAAGACCAGGAGTCGCGTCTTCATCAT
GAAGTCAGCATCAGTCCCTCGTTTGTGGACTTGCTCCAGTTGAAGTCTAT
CATTCAGCGAGTCGCGTCTTCATCATGAAGTCAGCATCAGTCCCTCGTTT
GTGGACTTGCTCCAGTTGAAGTCTATCATTCAGCGTGTACCGCTTGGAGT
GTTCAATGCCAGTGCAAAGCAGAATCACACTGGTTGGGTGAGCCAGTGGC
CAGTTGGAGACGAACGGAGTTCGCAGAAGCAGCCAGACCACGAGCGCGGC
AGGCGCGAGAAGAGCCGTGGACCAGACCAATCGCGCAGTAGGCGCGGGGG
TGCCAACTCAGATAACGATGTCGATTCTTCTCCCTATGACACTGAACCCC
TGTTCCGGACCAACAACCCACCGTTGCCCGAACTCAAGCCGGTTGAGATC
GACATAGAGGTGTACCGCTTGGAGTGTTCAATGCCAGTGCAAAGCAGAAT
CACACTGGTTGGGTGAGCCAGTGGCCAGTTGGAGACGAACGGAGTTCGCA
GAAGCAGCCAGACCACGAGCGCGGCAGGCGCGAGAAGAGCCGTGGACCAG
ACCAATCGCGCAGTAGGCGCGGGGGTGCCAACTCAGATAACGATGTCGAT
TCTTCTCCCTATGACACTGAACCCCTGTTCCGGACCAACAACCCACCGTT
GCCCGAACTCAAGCCGGTTGAGATCGACATAGAG back to top
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