mRNA_H-fluviatilis_contig101265.330.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101265.330.1
Unique NamemRNA_H-fluviatilis_contig101265.330.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig101265.330.1 vs. uniprot
Match: UPI00192096F5 (hypothetical protein n=1 Tax=Microvirga aerilata TaxID=670292 RepID=UPI00192096F5)

HSP 1 Score: 126 bits (317), Expect = 4.070e-31
Identity = 78/182 (42.86%), Postives = 102/182 (56.04%), Query Frame = 1 
Query:   22 YVLDYTSRQRFMQLANGGTTLLSACYDLYGVGDTGAPTSTRRLAIRRLLDVNGHYVSEGDQNFDWLRRGCLMAWTKLTSTQQPDVALVTIHRFRSPNLSSYWQRHGIGRASASLGGALVVGAAHFQAALP-QPNTATLAACGVGPANLRAGLARRAHALLPIAS-HMVGGVGEQ-QAILRLF 558
            Y +DY +  R + L +G   LL +CYD +GV      ++    AIR L D +G  V          RR  L  W+        +VAL  IH F  P    YWQRHGI  ASA+LGG LVVGAAH+  ALP  P  + LAAC V  +++RAGLAR+AH L P+A+  + G +G   +A+LRLF
Sbjct:  151 YAMDYDNPARIITLKSGNKALLCSCYDAFGVRAKAGGSTDILRAIRYLTDADGCPVDPPSHR---QRRTFLRRWSTFIDASNVNVALTAIHNFEQPGRDLYWQRHGIASASAALGGGLVVGAAHYMEALPTDPGRSPLAACAVPRSHIRAGLARQAHMLRPVAAVSLTGTLGPSPKALLRLF 329
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101265.330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI00192096F54.070e-3142.86hypothetical protein n=1 Tax=Microvirga aerilata T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101265contigH-fluviatilis_contig101265:243..830 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size588
Cds size588
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929035.1726203-CDS-H-fluviatilis_contig101265:242..8301622929035.1726203-CDS-H-fluviatilis_contig101265:242..830Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101265 243..830 -
1691135158.0486684-CDS-H-fluviatilis_contig101265:242..8301691135158.0486684-CDS-H-fluviatilis_contig101265:242..830Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101265 243..830 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101265.330.1prot_H-fluviatilis_contig101265.330.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101265 243..830 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101265.330.1

>prot_H-fluviatilis_contig101265.330.1 ID=prot_H-fluviatilis_contig101265.330.1|Name=mRNA_H-fluviatilis_contig101265.330.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=196bp
GRRFISPYVLDYTSRQRFMQLANGGTTLLSACYDLYGVGDTGAPTSTRRL
AIRRLLDVNGHYVSEGDQNFDWLRRGCLMAWTKLTSTQQPDVALVTIHRF
RSPNLSSYWQRHGIGRASASLGGALVVGAAHFQAALPQPNTATLAACGVG
PANLRAGLARRAHALLPIASHMVGGVGEQQAILRLFTSAASQGGT*
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mRNA from alignment at H-fluviatilis_contig101265:243..830-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101265.330.1 ID=mRNA_H-fluviatilis_contig101265.330.1|Name=mRNA_H-fluviatilis_contig101265.330.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=588bp|location=Sequence derived from alignment at H-fluviatilis_contig101265:243..830- (Heribaudiella fluviatilis SAG_13_90)
GGGCGGCGGTTCATCTCGCCCTACGTCTTGGACTACACGTCTCGACAACG
CTTCATGCAGCTGGCGAACGGAGGCACCACCCTGCTCTCCGCCTGCTACG
ATTTATACGGTGTCGGAGACACTGGCGCGCCCACGTCAACGCGACGGCTC
GCCATCCGCCGTCTCCTCGATGTGAATGGTCACTACGTCTCGGAGGGTGA
CCAAAACTTCGACTGGCTTCGCCGAGGCTGTCTCATGGCGTGGACCAAAT
TGACCTCCACGCAGCAGCCCGACGTGGCGCTTGTCACGATACACAGGTTC
CGAAGCCCTAACCTCTCTTCGTATTGGCAAAGACACGGCATCGGTCGAGC
GAGCGCATCTCTGGGCGGAGCGCTGGTCGTCGGTGCGGCGCATTTCCAGG
CGGCGCTCCCTCAACCGAACACCGCAACGCTGGCCGCCTGCGGTGTAGGC
CCGGCCAACCTGCGGGCCGGCTTGGCGCGTCGAGCACATGCGCTGCTGCC
GATCGCCTCGCACATGGTCGGTGGTGTCGGCGAGCAGCAGGCGATCCTGC
GGCTGTTCACATCCGCTGCCAGCCAGGGAGGAACATGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig101265:243..830-

>mRNA_H-fluviatilis_contig101265.330.1 ID=mRNA_H-fluviatilis_contig101265.330.1|Name=mRNA_H-fluviatilis_contig101265.330.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1176bp|location=Sequence derived from alignment at H-fluviatilis_contig101265:243..830- (Heribaudiella fluviatilis SAG_13_90)
GGGCGGCGGTTCATCTCGCCCTACGTCTTGGACTACACGTCTCGACAACG
CTTCATGCAGCTGGCGAACGGAGGCACCACCCTGCTCTCCGCCTGCTACG
ATTTATACGGTGTCGGAGACACTGGCGCGCCCACGTCAACGCGACGGCTC
GCCATCCGCCGTCTCCTCGATGTGAATGGTCACTACGTCTCGGAGGGTGA
CCAAAACTTCGACTGGCTTCGCCGAGGCTGTCTCATGGCGTGGACCAAAT
TGACCTCCACGCAGCAGCCCGACGTGGCGCTTGTCACGATACACAGGTTC
CGAAGCCCTAACCTCTCTTCGTATTGGCAAAGACACGGCATCGGTCGAGC
GAGCGCATCTCTGGGCGGAGCGCTGGTCGTCGGTGCGGCGCATTTCCAGG
CGGCGCTCCCTCAACCGAACACCGCAACGCTGGCCGCCTGCGGTGTAGGC
CCGGCCAACCTGCGGGCCGGCTTGGCGCGTCGAGCACATGCGCTGCTGCC
GATCGCCTCGCACATGGTCGGTGGTGTCGGCGAGCAGCAGGCGATCCTGC
GGCTGTTCACATCCGCTGCCAGCCAGGGAGGAACATGAGGGCGGCGGTTC
ATCTCGCCCTACGTCTTGGACTACACGTCTCGACAACGCTTCATGCAGCT
GGCGAACGGAGGCACCACCCTGCTCTCCGCCTGCTACGATTTATACGGTG
TCGGAGACACTGGCGCGCCCACGTCAACGCGACGGCTCGCCATCCGCCGT
CTCCTCGATGTGAATGGTCACTACGTCTCGGAGGGTGACCAAAACTTCGA
CTGGCTTCGCCGAGGCTGTCTCATGGCGTGGACCAAATTGACCTCCACGC
AGCAGCCCGACGTGGCGCTTGTCACGATACACAGGTTCCGAAGCCCTAAC
CTCTCTTCGTATTGGCAAAGACACGGCATCGGTCGAGCGAGCGCATCTCT
GGGCGGAGCGCTGGTCGTCGGTGCGGCGCATTTCCAGGCGGCGCTCCCTC
AACCGAACACCGCAACGCTGGCCGCCTGCGGTGTAGGCCCGGCCAACCTG
CGGGCCGGCTTGGCGCGTCGAGCACATGCGCTGCTGCCGATCGCCTCGCA
CATGGTCGGTGGTGTCGGCGAGCAGCAGGCGATCCTGCGGCTGTTCACAT
CCGCTGCCAGCCAGGGAGGAACATGA
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