mRNA_H-fluviatilis_contig101211.314.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig101211.314.1
Unique NamemRNA_H-fluviatilis_contig101211.314.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig101211.314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig101211contigH-fluviatilis_contig101211:214..729 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size516
Cds size345
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig101211.314.1prot_H-fluviatilis_contig101211.314.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig101211 312..656 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929033.450312-UTR-H-fluviatilis_contig101211:213..3111622929033.450312-UTR-H-fluviatilis_contig101211:213..311Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101211 214..311 +
1691135157.3547752-UTR-H-fluviatilis_contig101211:213..3111691135157.3547752-UTR-H-fluviatilis_contig101211:213..311Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101211 214..311 +
1622929033.4748898-UTR-H-fluviatilis_contig101211:656..7291622929033.4748898-UTR-H-fluviatilis_contig101211:656..729Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101211 657..729 +
1691135157.3789997-UTR-H-fluviatilis_contig101211:656..7291691135157.3789997-UTR-H-fluviatilis_contig101211:656..729Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig101211 657..729 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929033.4641247-CDS-H-fluviatilis_contig101211:311..6561622929033.4641247-CDS-H-fluviatilis_contig101211:311..656Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101211 312..656 +
1691135157.362562-CDS-H-fluviatilis_contig101211:311..6561691135157.362562-CDS-H-fluviatilis_contig101211:311..656Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig101211 312..656 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig101211.314.1

>prot_H-fluviatilis_contig101211.314.1 ID=prot_H-fluviatilis_contig101211.314.1|Name=mRNA_H-fluviatilis_contig101211.314.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=115bp
MRTLGMRTRPRPLPVGPADAAAGGETTRCRFLPVPLSCAHDPPFPVPHHQ
YRRCYSRRIQHCHSLLKTSWRPLLPSHSTDSSLLLSPESSRPFSPLAPSR
WLRPVLLSSWWLFT*
back to top

mRNA from alignment at H-fluviatilis_contig101211:214..729+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig101211.314.1 ID=mRNA_H-fluviatilis_contig101211.314.1|Name=mRNA_H-fluviatilis_contig101211.314.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=516bp|location=Sequence derived from alignment at H-fluviatilis_contig101211:214..729+ (Heribaudiella fluviatilis SAG_13_90)
TTTGCCCCTTCAGAAAACCAATCTATTTCCTATTTCCTACTCACTACAGT
GTCCCGTACAGTACGACGTAGTGATTCAGTACCTACCCTTGGTCTATCAT
GCGAACGTTAGGCATGCGTACCCGGCCACGTCCGCTGCCGGTAGGACCTG
CTGATGCAGCCGCTGGCGGTGAAACCACGCGCTGTCGTTTCCTACCCGTC
CCTCTCTCATGTGCCCATGACCCACCGTTCCCTGTGCCCCATCATCAGTA
TCGTCGCTGCTACTCTCGTCGGATTCAACACTGTCACTCTCTTCTAAAGA
CATCATGGCGCCCCTTGCTACCTTCTCACTCAACAGACTCATCACTACTA
CTTTCTCCGGAATCGTCGCGGCCGTTCTCTCCACTCGCACCCTCTCGTTG
GCTAAGGCCAGTACTGTTGTCGTCTTGGTGGCTTTTCACCTGATCGAGGT
CCTCCTGTACGTGCTGATGCCGCGCTCAACAAACACTCTGTAGTCGTTGA
TGTGCCTCGTCCGCTC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig101211:214..729+

>mRNA_H-fluviatilis_contig101211.314.1 ID=mRNA_H-fluviatilis_contig101211.314.1|Name=mRNA_H-fluviatilis_contig101211.314.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=690bp|location=Sequence derived from alignment at H-fluviatilis_contig101211:214..729+ (Heribaudiella fluviatilis SAG_13_90)
ATGCGAACGTTAGGCATGCGTACCCGGCCACGTCCGCTGCCGGTAGGACC
TGCTGATGCAGCCGCTGGCGGTGAAACCACGCGCTGTCGTTTCCTACCCG
TCCCTCTCTCATGTGCCCATGACCCACCGTTCCCTGTGCCCCATCATCAG
TATCGTCGCTGCTACTCTCGTCGGATTCAACACTGTCACTCTCTTCTAAA
GACATCATGGCGCCCCTTGCTACCTTCTCACTCAACAGACTCATCACTAC
TACTTTCTCCGGAATCGTCGCGGCCGTTCTCTCCACTCGCACCCTCTCGT
TGGCTAAGGCCAGTACTGTTGTCGTCTTGGTGGCTTTTCACCTGAATGCG
AACGTTAGGCATGCGTACCCGGCCACGTCCGCTGCCGGTAGGACCTGCTG
ATGCAGCCGCTGGCGGTGAAACCACGCGCTGTCGTTTCCTACCCGTCCCT
CTCTCATGTGCCCATGACCCACCGTTCCCTGTGCCCCATCATCAGTATCG
TCGCTGCTACTCTCGTCGGATTCAACACTGTCACTCTCTTCTAAAGACAT
CATGGCGCCCCTTGCTACCTTCTCACTCAACAGACTCATCACTACTACTT
TCTCCGGAATCGTCGCGGCCGTTCTCTCCACTCGCACCCTCTCGTTGGCT
AAGGCCAGTACTGTTGTCGTCTTGGTGGCTTTTCACCTGA
back to top