Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 316 |
| Cds size | 288 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929028.900552-CDS-H-fluviatilis_contig101040:266..452 | 1622929028.900552-CDS-H-fluviatilis_contig101040:266..452 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101040 267..452 + |
| 1691135156.1115358-CDS-H-fluviatilis_contig101040:266..452 | 1691135156.1115358-CDS-H-fluviatilis_contig101040:266..452 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101040 267..452 + |
| 1622929028.9149868-CDS-H-fluviatilis_contig101040:506..587 | 1622929028.9149868-CDS-H-fluviatilis_contig101040:506..587 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101040 507..587 + |
| 1691135156.1249073-CDS-H-fluviatilis_contig101040:506..587 | 1691135156.1249073-CDS-H-fluviatilis_contig101040:506..587 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101040 507..587 + |
| 1622929028.9235325-CDS-H-fluviatilis_contig101040:638..659 | 1622929028.9235325-CDS-H-fluviatilis_contig101040:638..659 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101040 639..659 + |
| 1691135156.1371489-CDS-H-fluviatilis_contig101040:638..659 | 1691135156.1371489-CDS-H-fluviatilis_contig101040:638..659 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig101040 639..659 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622929028.9334428-UTR-H-fluviatilis_contig101040:659..686 | 1622929028.9334428-UTR-H-fluviatilis_contig101040:659..686 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig101040 660..686 + |
| 1691135156.1466007-UTR-H-fluviatilis_contig101040:659..686 | 1691135156.1466007-UTR-H-fluviatilis_contig101040:659..686 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig101040 660..686 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig101040.279.1 >prot_H-fluviatilis_contig101040.279.1 ID=prot_H-fluviatilis_contig101040.279.1|Name=mRNA_H-fluviatilis_contig101040.279.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=96bp
AVREQSREAEVTPCEPEVKSWAELYDALDQLGSSSVNTFLRRLYTLCPRD
PTLRDLIDDPPQSLSSRKLVLTRWLLKQEETMSFDSVELAWFGPH* back to topmRNA from alignment at H-fluviatilis_contig101040:267..686+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig101040.279.1 ID=mRNA_H-fluviatilis_contig101040.279.1|Name=mRNA_H-fluviatilis_contig101040.279.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=420bp|location=Sequence derived from alignment at H-fluviatilis_contig101040:267..686+ (Heribaudiella fluviatilis SAG_13_90)
GCTGTGCGTGAACAATCACGCGAGGCAGAGGTGACACCGTGCGAGCCAGA
GGTGAAGTCCTGGGCAGAGCTGTACGATGCGCTCGACCAGCTGGGATCGA
GCAGTGTCAATACATTTCTGCGTCGGCTGTACACGTTGTGCCCTCGCGAC
CCCACTCTACGCGACCTCATCGATGATCCACCACAGGTCGATTTTCAGCT
TAGAACGTGATCGAAACTTTTGTGCGCTGTGCATGTGCAGAGTCTGAGCT
CCCGGAAACTAGTGCTGACACGATGGCTTCTGAAACAGGAAGAGACCATG
TCCTTCGATTCTGTGGAGCTGGTATGCAACGATCGCGTGGTGGCTTGTGT
AAGCGCACGTTGGTTTTCGTAGGCATGGTTTGGGCCACATTGAACTTGAC
GCGCTGCTTGTCAATGGAAG back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig101040:267..686+ >mRNA_H-fluviatilis_contig101040.279.1 ID=mRNA_H-fluviatilis_contig101040.279.1|Name=mRNA_H-fluviatilis_contig101040.279.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=576bp|location=Sequence derived from alignment at H-fluviatilis_contig101040:267..686+ (Heribaudiella fluviatilis SAG_13_90)
GCTGTGCGTGAACAATCACGCGAGGCAGAGGTGACACCGTGCGAGCCAGA
GGTGAAGTCCTGGGCAGAGCTGTACGATGCGCTCGACCAGCTGGGATCGA
GCAGTGTCAATACATTTCTGCGTCGGCTGTACACGTTGTGCCCTCGCGAC
CCCACTCTACGCGACCTCATCGATGATCCACCACAGGCTGTGCGTGAACA
ATCACGCGAGGCAGAGGTGACACCGTGCGAGCCAGAGGTGAAGTCCTGGG
CAGAGCTGTACGATGCGCTCGACCAGCTGGGATCGAGCAGTGTCAATACA
TTTCTGCGTCGGCTGTACACGTTGTGCCCTCGCGACCCCACTCTACGCGA
CCTCATCGATGATCCACCACAGAGTCTGAGCTCCCGGAAACTAGTGCTGA
CACGATGGCTTCTGAAACAGGAAGAGACCATGTCCTTCGATTCTGTGGAG
CTGAGTCTGAGCTCCCGGAAACTAGTGCTGACACGATGGCTTCTGAAACA
GGAAGAGACCATGTCCTTCGATTCTGTGGAGCTGGCATGGTTTGGGCCAC
ATTGAGCATGGTTTGGGCCACATTGA back to top
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