mRNA_H-fluviatilis_contig10102.276.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A6H5KFT3_9PHAE (PUA domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFT3_9PHAE) HSP 1 Score: 370 bits (950), Expect = 6.330e-125 Identity = 197/271 (72.69%), Postives = 220/271 (81.18%), Query Frame = 1 Query: 1 KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKG-------LLVAATGTDSGAKQSAAKSN------GGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 K ++V +GKARLFWDGNPLVYGGAV RVEGDPAAG+VVDV+DS GKFIAW GVYNPDSMYRVR+LA+EGEA+ RDVGAVV+ERL TARDARRAIG+P+ +T+TYRLVNGEGDRLSGLVVDVFA VVGVSSSA WVEA+R EIEGAL E FGADA EI+WRRSDGRLQQDGWKG ++ TG DS A + A S GGE E RLR P+T+VRE GLE+EV PQFGQKTG FYCDQRESR+AVR LS+GKNVLDM Sbjct: 73 KAVVVARGKARLFWDGNPLVYGGAVSRVEGDPAAGDVVDVIDSSGKFIAW-GVYNPDSMYRVRVLAREGEAVCHDRDVGAVVKERLLTARDARRAIGLPNAKTDTYRLVNGEGDRLSGLVVDVFAGVVGVSSSAVWVEAFRPEIEGALGEVFGADATEIIWRRSDGRLQQDGWKGNNLSSPGVVAETTGADSEAARGAGSSEEVGAVGGGETGEK-RLRSDAPSTVVREHGLEFEVRPQFGQKTG--FYCDQRESRQAVRELSQGKNVLDM 339
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: D7FS18_ECTSI (PUA domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS18_ECTSI) HSP 1 Score: 336 bits (861), Expect = 1.630e-112 Identity = 175/242 (72.31%), Postives = 197/242 (81.40%), Query Frame = 1 Query: 1 KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKG--------LLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGER 702 K ++V +GKARLFWDGNPLVYGGAV RVEGDPAAG+VVDV+DS GKFIAW GVYNPDSMYRVRILA+EGEA+ RDVGAVV+ERL TARDARRAIG+P+ +T+TYRLVNGEGDRLSGLVVDVFA VVGVSSSA WVEA+R EIEGAL E FGADA EI+WRRSDGRLQQDGWKG + TG D A ++A S G +A RLR P+T+VRE GLE+EV PQFGQKTGE+ Sbjct: 73 KAVVVARGKARLFWDGNPLVYGGAVSRVEGDPAAGDVVDVIDSSGKFIAW-GVYNPDSMYRVRILAREGEAVCHDRDVGAVVKERLLTARDARRAIGLPNAKTDTYRLVNGEGDRLSGLVVDVFAGVVGVSSSAVWVEAFRPEIEGALGEVFGADATEIIWRRSDGRLQQDGWKGNNQSSPGAAVAETTGADGKAARAAGSSEGVGVAGEKRLRSDAPSTVVREHGLEFEVRPQFGQKTGEK 313
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A836CPI8_9STRA (Ribosomal RNA large subunit methyltransferase I-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI8_9STRA) HSP 1 Score: 251 bits (640), Expect = 5.460e-78 Identity = 146/255 (57.25%), Postives = 169/255 (66.27%), Query Frame = 1 Query: 13 VFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILA-KEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 + KGKARLF+DGNPLV+GGAV V G PA +VV+V GK I W GV+N +SM+RVRILA E L RD+G VV R+RTAR AR AIG+PS T+ YR VNGEGDRLSGLVVDVF VGVSSSA WVE++R +E AL+ FG D IVWR SDGRLQQDGW ++ AA+ G E A D P + ELGL+Y V P GQKTG FYCDQRE+REAVR L+ GK VLDM Sbjct: 28 IAKGKARLFYDGNPLVFGGAVAAVTGRPAQCDVVEVKSDVGKLIGW-GVFNAESMFRVRILAFASEEPLGASRDIGCVVEARVRTARAARAAIGLPSAATDAYRCVNGEGDRLSGLVVDVFGTTVGVSSSALWVESHRPAVEAALRRAFG-DEYAIVWRLSDGRLQQDGW-------------GEEEAAEEAGAERA------DVPPPLQITELGLKYYVQPHIGQKTG--FYCDQRENREAVRRLAAGKTVLDM 259
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A7X7L9M1_9BACT (Class I SAM-dependent rRNA methyltransferase n=1 Tax=bacterium TaxID=1869227 RepID=A0A7X7L9M1_9BACT) HSP 1 Score: 185 bits (470), Expect = 6.340e-53 Identity = 111/257 (43.19%), Postives = 154/257 (59.92%), Query Frame = 1 Query: 4 KLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 ++ + KGKA+ FW G+PLV+ GA+ +V+G P AGE VDV+D +G I W GV+NP S YRVR+L E D + +V+ RL A RR++G+PS++TN YRL N EGDRLSGL +D F V+ V+SSA WVE YR+EIE A+++ IVWR+ + L+QDG ++ I+E VRELG+ Y+V GQKTG FY DQRE+R +R+L+ G++VLD+ Sbjct: 9 RVSIRKGKAKPFWYGHPLVFSGAIQKVDGSPEAGECVDVLDQNGNRIGW-GVFNPHSDYRVRLLCLAEENAPDYA-IQDLVKRRLEEAVLVRRSLGLPSDETNAYRLFNSEGDRLSGLTIDCFGDVLVVASSALWVEKYRAEIEAAMRDVIKPRV--IVWRQVNAPLRQDGVSEIIQT-------------------ISE--------ETVTVRELGVNYQVALGAGQKTG--FYFDQRENRALIRSLAHGRSVLDV 232
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: F0Y0Q6_AURAN (PUA domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y0Q6_AURAN) HSP 1 Score: 184 bits (467), Expect = 1.730e-52 Identity = 110/256 (42.97%), Postives = 145/256 (56.64%), Query Frame = 1 Query: 19 KGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEF----GADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 +GK++LF GNPL++ GAV GDP G+VVDVVD + + W G YNPDSMYRVR+L + G A + VGA V+ L A RRA+ +P T+ +R VN EGD LSGL VD F V+ SA W+E+ R+ +E AL+E + G ++WRR++ RL+QDGW G E+A G R +E GL YEV FGQKTG FYCDQR++R + L GK+VLD+ Sbjct: 5 RGKSKLFRKGNPLIFAGAVSSTAGDPQRGDVVDVVDGANQNVGW-GTYNPDSMYRVRLLGRGGAAETNEARVGAAVKALLGAAASRRRALDLPRADTDVFRFVNSEGDGLSGLTVDAFGDVLVCQISAVWLESRRAVVEAALREAYEGLTGISDARVLWRRAEARLRQDGWDG-------------------EADEMASGDRF-------AAKEGGLAYEV-DVFGQKTG--FYCDQRDNRAFLGPLCAGKSVLDL 230
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A4D9CY43_9STRA (PUA domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CY43_9STRA) HSP 1 Score: 186 bits (471), Expect = 5.520e-52 Identity = 114/262 (43.51%), Postives = 156/262 (59.54%), Query Frame = 1 Query: 7 LIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRIL---AKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGW---KGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 +++ GKARLF +GNPLVYG AV V G A G+ V+VVD G I G YN SMYRVR+L ++GEAL + +V R+ TA R+A+G+P+ +T +RLVNGEGD+LSGL DVF +V VSSS+ W E ++ I L+ G VWRRS+ RL+QDG+ + L A + A++ A +E GL+Y+VYP+ GQKTG FYCDQR++R+ +++LSRGK VLD+ Sbjct: 101 VVLRAGKARLFLEGNPLVYGEAVHEVVGHVADGDFVEVVDHRGNLIG-KGCYNSQSMYRVRLLWHAREKGEALY-ASSLEDIVARRVSTAWTTRQALGLPNAETTCFRLVNGEGDKLSGLAADVFDKVCVVSSSSLWCERHKDFIIQGLEASLGPAGISTVWRRSEARLKQDGFVDPEEALRPAIDVKAEARKEGAY------------------VWAKEAGLKYKVYPELGQKTG--FYCDQRQNRQMIQSLSRGKRVLDL 340
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: R1EX94_EMIHU (Uncharacterized protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1EX94_EMIHU) HSP 1 Score: 177 bits (449), Expect = 8.670e-50 Identity = 116/253 (45.85%), Postives = 149/253 (58.89%), Query Frame = 1 Query: 25 KARLFWDG-NPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRIL--AKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 KAR+F +G +PLV+ GA+ R E + GE VDV+D G+ I W GV+NP S+YRVR+L A E + L + R + +VR RL+ A R A +PSE T YRLVN EGDRLSGL VDVF SSA W+E R +E AL E G + +VWRRSDGRL+ DGW A+GT G GR A P T++ E GL+Y V P GQK+G FYCDQR++R + L G+ +LD+ Sbjct: 1 KARMFKNGGHPLVFEGAIKRTE-NVQVGEAVDVLDGAGELIGW-GVWNPHSLYRVRMLVPAIERDQL-EHRSISEIVRRRLQAAASRRAACCLPSESTTAYRLVNSEGDRLSGLTVDVFGSTAVAISSALWLELRREAVEVALLELAGIET--VVWRRSDGRLRTDGWN--PPEASGTAEGEAD-------------GRPAPAPPVTVL-ENGLKYLVAPVLGQKSG--FYCDQRDNRAMLAELCAGRRLLDL 230
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A7S3GZD2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GZD2_9STRA) HSP 1 Score: 174 bits (442), Expect = 3.710e-48 Identity = 102/256 (39.84%), Postives = 151/256 (58.98%), Query Frame = 1 Query: 4 KLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLD 771 ++++ KGK R+F G+PLV+ GA+ + G P G+ V V D G + G+YNP SMYRVR+++ + + L + + A+++ R+ A +R A+ +P T+ YRL+N EGDRLSG++VDV V V SSA W E + IE L+ I+WRR+ RL QDG + L GTDS +A NG +G + + +V E G++Y++ QKTG FYCDQRE+R+ +R+LS+GK VLD Sbjct: 47 QVLIAKGKERIFEQGDPLVFNGAISNIIGKPVLGDEVLVKDFQGNLLG-RGLYNPHSMYRVRVISSKDDKLINA-PLAALIKGRIEQAVQSRAAMLLPRSDTDVYRLINSEGDRLSGVIVDVIGSTVVVQSSALWAEIQKESIEAGLRSVLQFKDKTILWRRALSRLNQDGLQEL-----GTDS---TISASMNGDS--DGSATDNVAESEVVTENGIKYKLCAATDQKTG--FYCDQRENRQLIRSLSQGKTVLD 288
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A0M0KAW9_9EUKA (Ribosomal RNA large subunit methyltransferase i-like protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0KAW9_9EUKA) HSP 1 Score: 174 bits (442), Expect = 5.170e-48 Identity = 112/262 (42.75%), Postives = 143/262 (54.58%), Query Frame = 1 Query: 22 GKARLFWD-GNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGE-ALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGADADEIVWRRSDGRLQQDGWKGLLV---------AATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 GKARLF + G+PLV+ GAV +V GDP G +VDVVD + W GV+NP SMYRVR+LA E AL RD+ ++ RL A R A+ +PS +T YRL+N EGDRLSGL VDVF +SA W+E + L+ G E+VWRRSDGRLQQDGW+ + T A SA ++ E G++Y V P GQK+G FYCDQR++R + L R K VLD+ Sbjct: 40 GKARLFKNAGHPLVFSGAVDKVLGDPEPGAIVDVVDGKDGLVGW-GVFNPHSMYRVRLLATPEEPALIAHRDLRKLISHRLEAALKLRAALSLPSPETTAYRLINSEGDRLSGLTVDVFGGTAVAVTSAMWLEQRSDMVVECLRALPGI--TEVVWRRSDGRLQQDGWEVPNAKVEEVEEHQSLTDDSPTAHASAPXXXXXXXXXXXXXXPPPLPVLIYESGVKYLVAPVLGQKSG--FYCDQRDNRRQLAELCRDKRVLDL 296
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Match: A0A8J2SGB3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SGB3_9STRA) HSP 1 Score: 169 bits (427), Expect = 2.910e-46 Identity = 111/261 (42.53%), Postives = 145/261 (55.56%), Query Frame = 1 Query: 1 KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWAGVYNPDSMYRVRILAKEGEALADCRDVGAVVRERLRTARDARRAIGIPSEQTNTYRLVNGEGDRLSGLVVDVFARVVGVSSSATWVEAYRSEIEGALQEEFGA---DADEIVWRRSDGRLQQDGWKGLLVAATGTDSGAKQSAAKSNGGEIAEGGRLRDALPATIVRELGLEYEVYPQFGQKTGERFYCDQRESREAVRNLSRGKNVLDM 774 K + + +GKARLF DGNPLVYGGAV R GD + G+ V+VVD G I W G YNPDSMYRVR+L + D VR + TA + R A+ +PSE T+ +RL+N EGD LSGL VD + + S SA W EA R EI AL+E + + +I+WR + RL+ +G + + A D+ DA+ AT E L YEV +GQKTG FYCDQR++R + L GK VLD+ Sbjct: 32 KSVTIKRGKARLFRDGNPLVYGGAVERTSGDVSRGDAVEVVDGAGNNIGW-GFYNPDSMYRVRLLPGPMQD-----DPMQAVRSLIETACERRSALNLPSEATSAFRLINSEGDGLSGLTVDAYGAHLVCSISAAWAEARRVEITAALEESYSTLIGEKPQIIWRPAVARLRSEGLE--IEADDDADN---------------------DAVEAT---ESSLVYEV-DVWGQKTG--FYCDQRDNRNFLAPLCAGKRVLDL 257 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10102.276.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10102.276.1 >prot_H-fluviatilis_contig10102.276.1 ID=prot_H-fluviatilis_contig10102.276.1|Name=mRNA_H-fluviatilis_contig10102.276.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=259bp KKLIVFKGKARLFWDGNPLVYGGAVGRVEGDPAAGEVVDVVDSDGKFIAWback to top mRNA from alignment at H-fluviatilis_contig10102:5590..8142+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10102.276.1 ID=mRNA_H-fluviatilis_contig10102.276.1|Name=mRNA_H-fluviatilis_contig10102.276.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2553bp|location=Sequence derived from alignment at H-fluviatilis_contig10102:5590..8142+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10102:5590..8142+ >mRNA_H-fluviatilis_contig10102.276.1 ID=mRNA_H-fluviatilis_contig10102.276.1|Name=mRNA_H-fluviatilis_contig10102.276.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1554bp|location=Sequence derived from alignment at H-fluviatilis_contig10102:5590..8142+ (Heribaudiella fluviatilis SAG_13_90)back to top |