mRNA_H-fluviatilis_contig100968.262.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig100968.262.1 vs. uniprot
Match: A0A6I1QUA2_9CHLR (AAA family ATPase n=1 Tax=Dehalococcoidia bacterium TaxID=2026734 RepID=A0A6I1QUA2_9CHLR) HSP 1 Score: 53.9 bits (128), Expect = 3.000e-5 Identity = 39/143 (27.27%), Postives = 67/143 (46.85%), Query Frame = 1 Query: 1 LVVFIDEFDRLPDNA---LVGSVLKTFTK----VRFVVVGVAKTAETLIGSHPSVGRKLVGIEVPPFERSETEEVFRKATEVSESYPDSKGLQFSNAYVDRVHHDTGGYPNLIQKIGFHT----IKPDRLHREMFKHRVDIGL 396
LVV +DEFDR+ D A L+ +KT + ++VGVA T + L+ H S+ R LV + +P +E +++ R D + + + R+ H + G P+ +G H+ I R+H + + V + L
Sbjct: 191 LVVIVDEFDRIEDEAVPRLMADTIKTLSDYLVDATLILVGVADTVDELVYEHGSIDRALVQVLMPRMSIAELQDIVRTRL-------DRVSMTIDSEVLHRLAHVSQGLPHYTHLLGLHSGVAAIDAGRMHVRIDELNVALHL 326
BLAST of mRNA_H-fluviatilis_contig100968.262.1 vs. uniprot
Match: A0A845BAA0_9PROT (AAA_16 domain-containing protein n=2 Tax=Roseomonas coralli TaxID=2545983 RepID=A0A845BAA0_9PROT) HSP 1 Score: 53.5 bits (127), Expect = 4.720e-5 Identity = 31/95 (32.63%), Postives = 53/95 (55.79%), Query Frame = 1 Query: 1 LVVFIDEFDRLPDNAL---VGSVLKTFTK----VRFVVVGVAKTAETLIGSHPSVGRKLVGIEVPPFERSETEEVFRKATEVSESYPDSKGLQFS 264
L++ +DEFDRLP++A + +K ++ V F++VG + + L+ HPSV R +VG+++P E EE+ + +S GL+FS
Sbjct: 676 LILMVDEFDRLPNDATRMRIADTIKLLSEHSASVFFLIVGASDSLTQLLDRHPSVQRNVVGVQLPLLTNGEVEEIVLRGGRLS-------GLEFS 763 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100968.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100968.262.1 >prot_H-fluviatilis_contig100968.262.1 ID=prot_H-fluviatilis_contig100968.262.1|Name=mRNA_H-fluviatilis_contig100968.262.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=182bp LVVFIDEFDRLPDNALVGSVLKTFTKVRFVVVGVAKTAETLIGSHPSVGRback to top mRNA from alignment at H-fluviatilis_contig100968:299..844- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig100968.262.1 ID=mRNA_H-fluviatilis_contig100968.262.1|Name=mRNA_H-fluviatilis_contig100968.262.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=546bp|location=Sequence derived from alignment at H-fluviatilis_contig100968:299..844- (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig100968:299..844- >mRNA_H-fluviatilis_contig100968.262.1 ID=mRNA_H-fluviatilis_contig100968.262.1|Name=mRNA_H-fluviatilis_contig100968.262.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1092bp|location=Sequence derived from alignment at H-fluviatilis_contig100968:299..844- (Heribaudiella fluviatilis SAG_13_90)back to top |