Homology
BLAST of mRNA_H-fluviatilis_contig1009.248.1 vs. uniprot
Match:
D8LF91_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF91_ECTSI)
HSP 1 Score: 60.8 bits (146), Expect = 8.180e-9
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 148 MVRLLHVTIYEGEGLLEHKSSYVVAELLDVTGRPIKNER 264
MVRLLHVTI+EG G+ HK Y AELLD+TGRPIK ER
Sbjct: 1 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKER 39
BLAST of mRNA_H-fluviatilis_contig1009.248.1 vs. uniprot
Match:
A0A6H5JL55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL55_9PHAE)
HSP 1 Score: 60.8 bits (146), Expect = 8.210e-9
Identity = 28/39 (71.79%), Postives = 31/39 (79.49%), Query Frame = 1
Query: 148 MVRLLHVTIYEGEGLLEHKSSYVVAELLDVTGRPIKNER 264
MVRLLHVTI+EG G+ HK Y AELLD+TGRPIK ER
Sbjct: 1 MVRLLHVTIFEGVGVAPHKEPYACAELLDITGRPIKKER 39
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1009.248.1 vs. uniprot
Analysis Date: 2022-09-19 (
Diamond blastx: OGS1.0 vs UniRef90 )
Total hits: 2
0 1 Expect = 8.18e-9 / Id = 71.79 Expect = 8.21e-9 / Id = 71.79 Sequence D8LF91_ECTSI A0A6H5JL55_9PHAE
Match Name E-value Identity Description
D8LF91_ECTSI 8.180e-9 71.79 Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more] A0A6H5JL55_9PHAE 8.210e-9 71.79 Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name Value
Taxonomic scope Eukaryota Seed ortholog score 60.8 Seed ortholog evalue 3.6e-07 Seed eggNOG ortholog 2880.D8LF91 KEGG ko ko:K19949,ko:K22125,ko:K22127 EggNOG free text desc. plasma membrane repair EggNOG OGs KOG1326@1,KOG1326@2759 COG Functional cat. S Best tax level Eukaryota Best eggNOG OG NA|NA|NA BRITE ko00000,ko04131 Hectar predicted targeting category other localisation Exons 2 Model size 269 Cds size 267 Stop 0 Start 0
Relationships
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type Position
1622929025.1217306-CDS-H-fluviatilis_contig1009:13370..13432 1622929025.1217306-CDS-H-fluviatilis_contig1009:13370..13432 Heribaudiella fluviatilis SAG_13_90 CDS H-fluviatilis_contig1009 13371..13432 + 1691135154.1476693-CDS-H-fluviatilis_contig1009:13370..13432 1691135154.1476693-CDS-H-fluviatilis_contig1009:13370..13432 Heribaudiella fluviatilis SAG_13_90 CDS H-fluviatilis_contig1009 13371..13432 + 1622929025.1383686-CDS-H-fluviatilis_contig1009:16009..16214 1622929025.1383686-CDS-H-fluviatilis_contig1009:16009..16214 Heribaudiella fluviatilis SAG_13_90 CDS H-fluviatilis_contig1009 16010..16214 + 1691135154.159861-CDS-H-fluviatilis_contig1009:16009..16214 1691135154.159861-CDS-H-fluviatilis_contig1009:16009..16214 Heribaudiella fluviatilis SAG_13_90 CDS H-fluviatilis_contig1009 16010..16214 +
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig1009.248.1
>prot_H-fluviatilis_contig1009.248.1 ID=prot_H-fluviatilis_contig1009.248.1|Name=mRNA_H-fluviatilis_contig1009.248.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=89bp
LRQFPGEPNQPNIPSGGLQYRITPDFVARRLTETVLSEGRRWPGAAAHIM back to top mRNA from alignment at H-fluviatilis_contig1009:13371..16216+
Legend: CDS polypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1009.248.1 ID=mRNA_H-fluviatilis_contig1009.248.1|Name=mRNA_H-fluviatilis_contig1009.248.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=2846bp|location=Sequence derived from alignment at H-fluviatilis_contig1009:13371..16216+ (Heribaudiella fluviatilis SAG_13_90)CTGCGGCAATTTCCTGGTGAACCCAACCAACCGAACATCCCCTCGGGTGG
GCTACAGTACAG GTATTCTGCTTGCCTTTTTTGGGTTTCTCCTTCCCCTA
GAGGCCAGACGTTCCGACCGGTAGAATATTTCTGTCCGTGTTTTCGCTTA
TGTCCTGGTTGAAACAGGAATACGGTACATGCAGATAGTGTTACCCCTTC
CCGCTCTGTGGGGTACTGTTCCATTGCGACGGGCACGCCGTGAAGACTCC
GTGGCCTTTATCCTCGTCTCCCCTTGTCGCAAGCAGCGGTAGTTTCACCA
ACATTGGCCCGTGTGAACGACGCAACAGACGCAACAGTACTAGCAGTAGT
ACGCTGCAGACGTACGGACTGGGCAGGACAGATATGAAATACAAAAATGT
AACTCCAAATATTTCTTTTTTGGTGCTGTTCAATGTGTCGGCCGCGACCC
GCGACGGGCCGGTAACGCAAAATGTATGTTTTCACATAGCATGTGTTTGG
TGCCCAAGTGTTGATAGTATCATAAATACGTTTGCGGAACTCATCGGGTT
GACCGCTGTGCTATTTTTTCCTGTCCATGGGCGGCAGTGTTTTGCAGTTA
CTCCGTGGTACAGTAGTAGGACTGGTTGTGACGTTTATGGGAGTGATCTG
ATGTATACATGTACGTGCCGTGGTCGTCCCACGATGCGGGCATGGACATT
CAACGATCAAAGCAGTTCCAACATGAGTCATTGAGATTGCGCGTGAAATT
TGCGAAGCAGAATTACCTCGCGTTGTTTATGAAATCTGAGGGCTCTCCTC
GCGCTAGCTCTAGGTTGCATGCCGTTTGTCCCTTTCTATGTCACCGAACA
GCACAGTGTCCTGTCTGCAATCTGCAGCGCAATTCCCTTAAGTAGCTAGC
ACGTTCAACCTCTCGACGGTTTTCAATTAACGGAACTCGTGCCCCCCTAC
ATGGACAGGCAAATACATGGTTGATGGTGTTTATACTTCGTTTTGAATGT
TCTTGCCACCCAACCCTGAAGCCTAACCCACACCCCACACACAACGTCCC
TAGGCCCCTACAGTACGGTAGCCGGGTCGCAAACGGCCCCTGCGGTGCTT
TTCTCGAGCGAAACGTGCGTTCGGGTCAAAGGGCGGGACTACTCCAAGGG
TTAGGGCAAAAAATCTGCGAACTTCGCCGATGGCATAGGGTTCATGAAGT
CTGTGTAAAGGTTTTGTGAAGTCAATCATGCGTGTCGTTATGGTTTTCGA
CAGTTGGAAAGCACGTGATCGCCTCGAGCGACAAACGCCCGCAAGACACT
CTAGGGCTCGTGTTTGGGATTAAATTTAGGTTTCATTCGTGATCGCGGTG
GGGTCCGGGTCGGAGTCGGGGTTGGGGTCGGGCCCGGGGCCGGGCCCGGG
GCCGGGGCCAGGATCTGCTCGCGACAGAAGCGTGAACAGTAAGAAACATC
AACACATTTCTGTCCAACAACTTTTTACGATTGGTGTCGCCCCCATTTTC
ACGGGCAAACTGCATGCACATGGGCGAAAATCGGTTTTTTATTTTGCATG
CAATGGGTAATATCCGACCGCATCTTGGGCACTGTCATGCCTGCAATATT
TGAGTCCAAGGGTGAGCAAGCCACCGTATACAGTCAATTCAACATGGCCA
ACACAGCTTTATCGTGATCTGCGGGTAGTTTTACTCCTGCGATCATGAAG
CTATGCACGCATAGTCTATCAATCCCTTTCTGTTCGCCGCCGCCGCCGCC
GCCGGAGGGTTTGTCTTCGTAATACACGTGCACTTGGGGTGCATAGCTTT
GGCATCTTTTCAGTTGTCGGTCTGTTTCGAAAGTGTGTCGCGCTATGCGG
TGCTTTGTGCAGTAAAGCGCGACGCTTTGCAGACAGAACGCCACTTGAAG
CCGCCGCGGTTTGTCAAGACTCGGGATATGTGTTACCTCAACGTTTGCTG
CCATGTGCTACGCAGAATATCTTAATTGTCTGCTGTACGCCTGTACAACA
CGGACGGATACAGAATGCATCCAAAGCTTATGACGCAGTGGTACCGTCTG
AACGGCTCGCCAAGAATGAAGGTTGGGATTGATTGTGTCGATGGCAGATG
GGGAGGATTGGCGTGGCCTTTGTCACGATAGGCGTGTGTGTGGCGTGCTG
GTGAAAGCTTTCATGGTCGATTCGAAAGAAATCAGCTCTTACCATGAAGA
GCAAGGAACCGCTACAGTACACGGTATGGTGGTTGAGAAACCACGGTTTC
TGTCGGAAAATCAGACGCAGCAAAATGTATGAGAGCGACCCAGACAAGCA
ACAGCCTCGTAGACTCCCCGTGTCTGTTCCCGACTGCATAGTTCTTCGTG
GCATTCCCCTTTGCTCACGTTCCACTCGTCCAGTGTCCTCCCTCCATTCA
CATACAGTATATTCTCCCCTTCCCCTTCGATCGTAATGTGGACGAAAGAA
AAGAGCACAGCTAAGCGGTACTAGATTTTTCTGGTTGCGGACGTCGGAGT
AGCAGAGACAAAGCCGCAACGAAAACACGCCTGACATGTATTGTCTAGGA
CGAAGGACACCTTTTGTTTTGCACGGACTTATTGGCTTGCGACGTTCGAC
GCTATCGACACTGACCGCGTGTTTTATCCTTGCCGGCAGGATCACTCCCG
ATTTTGTCGCTCGTCGGCTGACGGAAACCGTTCTTAGCGAGGGTAGGCGG
TGGCCGGGCGCGGCCGCACACATCATGGTTCGGCTGCTTCATGTGACGAT
ATACGAAGGCGAGGGTCTCCTCGAGCACAAGAGCTCGTACGTGGTCGCTG
AGTTGCTCGATGTCACCGGCCGTCCCATCAAGAACGAGCGTGCT back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig1009:13371..16216+
>mRNA_H-fluviatilis_contig1009.248.1 ID=mRNA_H-fluviatilis_contig1009.248.1|Name=mRNA_H-fluviatilis_contig1009.248.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=534bp|location=Sequence derived from alignment at H-fluviatilis_contig1009:13371..16216+ (Heribaudiella fluviatilis SAG_13_90) back to top