mRNA_H-fluviatilis_contig100854.240.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100854.240.1
Unique NamemRNA_H-fluviatilis_contig100854.240.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: A0A7K1IFW8_9ACTN (Non-specific serine/threonine protein kinase n=1 Tax=Nitriliruptoraceae bacterium ZYF776 TaxID=2604685 RepID=A0A7K1IFW8_9ACTN)

HSP 1 Score: 84.3 bits (207), Expect = 6.400e-17
Identity = 43/101 (42.57%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRRSYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFAVGERGFALNLVTARSRWEERADEFLAFQAGFTP 291
            LR+D     + DP+A WE  E  F      Y+R+RLE TEFRG PAAIWE+ + D      A +L    G+R +ALNL +  + W    + F  F AGFTP
Sbjct:  530 LRIDWTDDPAPDPLADWEEFEPVFAGRFEDYERVRLEATEFRGEPAAIWEYAYTDGGTELRAINLNLLAGDRAYALNLQSPAASWSSIGELFPTFAAGFTP 630          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: A0A838H1Q5_9ACTN (Non-specific serine/threonine protein kinase n=1 Tax=Euzebyales bacterium TaxID=2740540 RepID=A0A838H1Q5_9ACTN)

HSP 1 Score: 79.0 bits (193), Expect = 4.940e-15
Identity = 40/101 (39.60%), Postives = 56/101 (55.45%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRRSYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFAVGERGFALNLVTARSRWEERADEFLAFQAGFTP 291
            +RVD       DPVAAWE Q  +F A   +Y+ I +EP +FRG  AA+WE+T+ D     HA +LG   G+ G+ALN  T    +++  D F+     F P
Sbjct:  464 MRVDYTDDPGDDPVAAWEEQSESFDARHDNYREIGIEPFDFRGDDAALWEYTYSDGGADLHAYNLGLVAGDYGYALNFQTRDEDFDDNRDLFVQMVRTFDP 564          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI001BEC6C48 (serine/threonine protein kinase n=1 Tax=Streptomyces sp. ISL-11 TaxID=2819174 RepID=UPI001BEC6C48)

HSP 1 Score: 73.6 bits (179), Expect = 3.820e-13
Identity = 39/104 (37.50%), Postives = 61/104 (58.65%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRR--SYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAGFTP 291
            LRV  +  +S DP+  W++ E       +   YK++R+E TE+RG PAAIWEFTW+ +     AADLGF   GE+ +A+ +   ++ W++ +  F   + GF P
Sbjct:  408 LRVSVLELASSDPLQHWKNDEEKSLKEGKLPGYKQLRMEDTEYRGEPAAIWEFTWQGRAREFRAADLGFGRPGEKEYAIYVSAPKADWDKYSPVFGVVRDGFRP 511          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI0019BEE331 (Uncharacterized protein n=2 Tax=Streptomyces hiroshimensis TaxID=66424 RepID=UPI0019BEE331)

HSP 1 Score: 71.6 bits (174), Expect = 1.850e-12
Identity = 39/104 (37.50%), Postives = 59/104 (56.73%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRR--SYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAGFTP 291
            LRV  +  +S +P+  W+  EA      +   Y ++R++ TEFRG PAAIWEFTW+ +     AADLGF   GE+ +A+ L   ++ W + +  F   + GF P
Sbjct:  499 LRVSVLDLASSNPLQRWKDDEAKSVKEGKLPGYHQLRMQSTEFRGLPAAIWEFTWQGRAREYQAADLGFGRPGEKEYAIYLSAPKADWHKHSQVFDVVREGFRP 602          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: A0A3B0BBM3_9ACTN (Non-specific serine/threonine protein kinase n=5 Tax=Streptomyces TaxID=1883 RepID=A0A3B0BBM3_9ACTN)

HSP 1 Score: 67.8 bits (164), Expect = 4.170e-11
Identity = 38/102 (37.25%), Postives = 58/102 (56.86%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRR--SYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAGF 285
            LRV  +  +S DP+  W+  EA      +   Y + R++ TE+RG PAAIWEF+W+ +     AADLGF   GE+ +A+ L    + W++ +  F A + GF
Sbjct:  528 LRVSVLDLASNDPLQRWKDDEAKSVKEGKLPGYHQRRMQSTEYRGMPAAIWEFSWKGRAREYRAADLGFGRPGEKEYAIYLSAPSAEWDKHSPVFDAVRDGF 629          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI0019C5E5A9 (serine/threonine protein kinase n=1 Tax=Streptomyces cinnamoneus TaxID=53446 RepID=UPI0019C5E5A9)

HSP 1 Score: 67.4 bits (163), Expect = 5.650e-11
Identity = 36/102 (35.29%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRR--SYKRIRLEPTEFRGSPAAIWEFTWE----DKHAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAGF 285
            LR+  +  +S DP+  W+  EA   A  +   YK++R++ TE+RG PAA+WEF+W     D  A DLGF   G+  +A+ L   ++ W++    F   + GF
Sbjct:  458 LRISVLDLASSDPLQRWKDDEAKSVAEGKLPGYKQLRMQSTEYRGQPAALWEFSWRGRARDFRAVDLGFGRPGQNEYAIYLSAPKADWDKHKKVFDDVKDGF 559          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI001F110122 (protein kinase n=3 Tax=Streptomyces TaxID=1883 RepID=UPI001F110122)

HSP 1 Score: 67.4 bits (163), Expect = 5.650e-11
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQE--AAFRASRRSYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAGFTP 291
            LRV     +S DP+  W+  E  +        Y ++R++ TE+RG PAAIWEFTW+ +     AADLGF   G + +A+ L   ++ W + +  F   + GF P
Sbjct:  466 LRVSVFDLASSDPLQRWKDDETKSVKEGKLPGYHQLRMQGTEYRGLPAAIWEFTWQGRAREYRAADLGFGRPGGKEYAIYLSAPKADWHKHSQVFDVVREGFRP 569          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI001CE283CD (protein kinase n=1 Tax=Streptomyces sp. SCA3-4 TaxID=2871810 RepID=UPI001CE283CD)

HSP 1 Score: 66.6 bits (161), Expect = 1.060e-10
Identity = 35/102 (34.31%), Postives = 57/102 (55.88%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRR--SYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAGF 285
            LR+  +  +S DP+  W+  EA   A  +   YK++R++ TE+RG PAA+WEF+W  +     A DLGF   G+  +A+ L   ++ W++    F   + GF
Sbjct:  483 LRISVLDLASSDPLQRWKDDEAKSVAEGKLPGYKQLRMQSTEYRGQPAALWEFSWRGRAREFRAVDLGFGRPGQNEYAIYLSAPKADWDKHKKVFDDVKDGF 584          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI001F4EFBEC (protein kinase n=1 Tax=Streptomyces orinoci TaxID=67339 RepID=UPI001F4EFBEC)

HSP 1 Score: 60.5 bits (145), Expect = 1.540e-8
Identity = 36/101 (35.64%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRAS--RRSYKRIRLEPTEFRGSPAAIWEFTWEDK----HAADLGFA-VGERGFALNLVTARSRWEERADEFLAFQAG 282
            + VD +  +  D V  W+  E   +A    + YKR RL+PT +RG PAA+WEF+W+ +     A DLGF   G   +A+ L    +RW+     F A + G
Sbjct:  449 VEVDVLDLAGPDHVQHWKDVEEQAKADPDMQQYKRERLQPTLYRGQPAAVWEFSWQGRARRFRAIDLGFGREGGNEYAIYLSAPDARWDRYRPAFDAVRDG 549          
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Match: UPI00143ADEE8 (protein kinase n=1 Tax=Streptomyces sp. PLAI1-29 TaxID=2053010 RepID=UPI00143ADEE8)

HSP 1 Score: 57.4 bits (137), Expect = 1.870e-7
Identity = 33/89 (37.08%), Postives = 48/89 (53.93%), Query Frame = 1
Query:    1 LRVDTVARSSGDPVAAWESQEAAFRASRR--SYKRIRLEPTEFRGSPAAIWEFTWE----DKHAADLGFA-VGERGFALNLVTARSRWE 246
            LRV+    +S DP+  W+  EA  R   +   Y+++R+  TE+R  PAA+WEFTWE    D  A +LGF   G + + L L      W+
Sbjct:  502 LRVNVQDFASDDPLQDWKDDEARSREEGKLPGYRQLRMNRTEYRERPAAVWEFTWEGRKRDYRAINLGFGRPGGKKYVLYLSAPAKDWD 590          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100854.240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 14
Match NameE-valueIdentityDescription
A0A7K1IFW8_9ACTN6.400e-1742.57Non-specific serine/threonine protein kinase n=1 T... [more]
A0A838H1Q5_9ACTN4.940e-1539.60Non-specific serine/threonine protein kinase n=1 T... [more]
UPI001BEC6C483.820e-1337.50serine/threonine protein kinase n=1 Tax=Streptomyc... [more]
UPI0019BEE3311.850e-1237.50Uncharacterized protein n=2 Tax=Streptomyces hiros... [more]
A0A3B0BBM3_9ACTN4.170e-1137.25Non-specific serine/threonine protein kinase n=5 T... [more]
UPI0019C5E5A95.650e-1135.29serine/threonine protein kinase n=1 Tax=Streptomyc... [more]
UPI001F1101225.650e-1135.58protein kinase n=3 Tax=Streptomyces TaxID=1883 Rep... [more]
UPI001CE283CD1.060e-1034.31protein kinase n=1 Tax=Streptomyces sp. SCA3-4 Tax... [more]
UPI001F4EFBEC1.540e-835.64protein kinase n=1 Tax=Streptomyces orinoci TaxID=... [more]
UPI00143ADEE81.870e-737.08protein kinase n=1 Tax=Streptomyces sp. PLAI1-29 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100854contigH-fluviatilis_contig100854:38..334 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue3.9e-10
Seed eggNOG ortholog66429.JOFL01000018_gene1425
EggNOG free text desc.serine threonine protein kinase
EggNOG OGs2GIV0@201174,COG0515@1,COG0515@2
COG Functional cat.KLT
Best tax levelActinobacteria
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929024.2200718-CDS-H-fluviatilis_contig100854:37..3341622929024.2200718-CDS-H-fluviatilis_contig100854:37..334Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100854 38..334 +
1691135153.9212992-CDS-H-fluviatilis_contig100854:37..3341691135153.9212992-CDS-H-fluviatilis_contig100854:37..334Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100854 38..334 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100854.240.1prot_H-fluviatilis_contig100854.240.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100854 38..334 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100854.240.1

>prot_H-fluviatilis_contig100854.240.1 ID=prot_H-fluviatilis_contig100854.240.1|Name=mRNA_H-fluviatilis_contig100854.240.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=99bp
LRVDTVARSSGDPVAAWESQEAAFRASRRSYKRIRLEPTEFRGSPAAIWE
FTWEDKHAADLGFAVGERGFALNLVTARSRWEERADEFLAFQAGFTPR*
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mRNA from alignment at H-fluviatilis_contig100854:38..334+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100854.240.1 ID=mRNA_H-fluviatilis_contig100854.240.1|Name=mRNA_H-fluviatilis_contig100854.240.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=297bp|location=Sequence derived from alignment at H-fluviatilis_contig100854:38..334+ (Heribaudiella fluviatilis SAG_13_90)
CTCCGGGTCGACACGGTCGCCCGATCGTCGGGCGACCCGGTGGCGGCGTG GGAGTCCCAGGAAGCGGCCTTCCGCGCGAGCCGGCGGAGCTACAAGCGGA TCCGCCTCGAGCCGACGGAGTTCCGCGGTTCACCCGCCGCCATCTGGGAG TTCACCTGGGAGGACAAGCACGCCGCCGACCTCGGGTTCGCGGTCGGCGA GCGCGGCTTCGCCCTCAACCTCGTCACGGCCCGCTCCCGCTGGGAGGAGC GGGCCGACGAGTTCCTCGCCTTCCAGGCCGGCTTCACCCCGCGATGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100854:38..334+

>mRNA_H-fluviatilis_contig100854.240.1 ID=mRNA_H-fluviatilis_contig100854.240.1|Name=mRNA_H-fluviatilis_contig100854.240.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=594bp|location=Sequence derived from alignment at H-fluviatilis_contig100854:38..334+ (Heribaudiella fluviatilis SAG_13_90)
CTCCGGGTCGACACGGTCGCCCGATCGTCGGGCGACCCGGTGGCGGCGTG
GGAGTCCCAGGAAGCGGCCTTCCGCGCGAGCCGGCGGAGCTACAAGCGGA
TCCGCCTCGAGCCGACGGAGTTCCGCGGTTCACCCGCCGCCATCTGGGAG
TTCACCTGGGAGGACAAGCACGCCGCCGACCTCGGGTTCGCGGTCGGCGA
GCGCGGCTTCGCCCTCAACCTCGTCACGGCCCGCTCCCGCTGGGAGGAGC
GGGCCGACGAGTTCCTCGCCTTCCAGGCCGGCTTCACCCCGCGATGACTC
CGGGTCGACACGGTCGCCCGATCGTCGGGCGACCCGGTGGCGGCGTGGGA
GTCCCAGGAAGCGGCCTTCCGCGCGAGCCGGCGGAGCTACAAGCGGATCC
GCCTCGAGCCGACGGAGTTCCGCGGTTCACCCGCCGCCATCTGGGAGTTC
ACCTGGGAGGACAAGCACGCCGCCGACCTCGGGTTCGCGGTCGGCGAGCG
CGGCTTCGCCCTCAACCTCGTCACGGCCCGCTCCCGCTGGGAGGAGCGGG
CCGACGAGTTCCTCGCCTTCCAGGCCGGCTTCACCCCGCGATGA
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