mRNA_H-fluviatilis_contig10079.228.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10079.228.1
Unique NamemRNA_H-fluviatilis_contig10079.228.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A251U7I1_HELAN (ER membrane protein complex subunit 1 n=4 Tax=Heliantheae alliance TaxID=911341 RepID=A0A251U7I1_HELAN)

HSP 1 Score: 356 bits (914), Expect = 5.760e-104
Identity = 221/622 (35.53%), Postives = 350/622 (56.27%), Query Frame = 3
Query: 1095 GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYP-SLLNRLGPQLQDL-----LASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQTGSVEDI-------WRLQCY----KEHSDCLVFSTTLSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGEY--RAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIG-ETLMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            G V ++F + + +      FR LIV +D SL +LQ  +++WTRD+ LA++  V   +LP +    +  +   SL   L   +  L     LA+   + A + +   +     ++  D  GFRKL++ +T  GK+YAL +  G +VW  + +  +T S +         W++  +       S  +V    LS+T  + +  ++  TG  +L +     H  ++ I LP+RD+    LH+L+D   +  +YP   EA S+F +   NVY++      G ++GY VK+  S EY   A  +W++ FP E E I A   +  NEV+ +  + I  E +MYKY++ +++ VATV   P A   +  G  T  +  + VYLIDTVTG IL R+ H   +GPVH + SEN VV H+++ + +++EMSV+E++++   +++ DV +L           +S+S P +    Q+Y F   +KA+SVS T  GITSKH L+G + DQV  L++RFVD +R     TQ E+EEGL+P    LP+ P   +++   V GLRGI +  A LESTSLVF+YGVD+F+TR+APS+T+D L EDFNY  L+ T+  +++ IFVT  LS+  +++  WR
Sbjct:  370 GFVHKIFINNYVRTDRSHGFRALIVMEDHSLLLLQQGEIVWTRDDGLASVIDVTTSELPVEKIGVSVAKVEHSLFEWLKGHMLKLKGTLMLATPDEVAAIQQI-RLQSSQKNKMTRDHNGFRKLLILLTRAGKLYALHTGNGRVVWSTLLQSLRTTSQQQCAGLKLRQWQVPHHHALDNNPSVLVVGRCGLSLTSPSALSIVDAYTGK-ELQNLGPAEHSTVQVITLPFRDSTEQQLHLLIDADKRAHLYPTTPEAASIFQRESENVYWYSVESEAGILRGYGVKKTHSSEYSFEARNLWSIVFPAESEKIIATVTRKPNEVVHTQAKVIADEDVMYKYISKNMVFVATV--SPKASGPI--GSATPDESVLVVYLIDTVTGRILHRMTHLGSQGPVHAVLSENWVVYHYFNLRAHRYEMSVIEIYDQ-SRAENKDVLKLIVGKHNLTTPVSSYSRPEVTTKSQSYFFTHSVKAISVSSTAKGITSKHLLIGTIGDQVLALDKRFVDPRRSLNP-TQAEKEEGLLPLTDALPIIPQSYVTHAFKVEGLRGIETIPAKLESTSLVFAYGVDLFYTRIAPSKTYDSLTEDFNYALLLLTIVALVIAIFVTWVLSERKDLQDKWR 983          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: D8QUF2_SELML (ER membrane protein complex subunit 1 n=4 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QUF2_SELML)

HSP 1 Score: 351 bits (901), Expect = 1.810e-102
Identity = 237/669 (35.43%), Postives = 371/669 (55.46%), Query Frame = 3
Query:  945 LDQPITDAFVIHMLFDKSKEQLSLVIHHADPFEKASSLPPLIPHVDFVNHGGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYPSLLN--------RLGPQLQDLLASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQT-GSVEDI-WRLQCYKEHSDCLVFSTTLSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQA-SGE-----YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIGET-LMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            LD     +F+ H+    SKE    V+   +  E A     + P     N GGV ++F + + K      FR LIV QD SL++LQ  +++W+R+EALA++      +LP +    +  E    L         RL   L  +LA+A+   A + +      D T++  D  GFRKLI+ +T  GK++AL +  G IVW     +  T GS++   WR+       + +      S   T     ++ LTG+V    T+ LP+ +  A+ LP  D+    LH+L+D Q K  +YP  DE++SLF+K++ NVYF++A    G ++GY +K Q  +GE     +++  +W+V FPK+ E+IAA+  +  +E++ +  + +G   + YKYLN +++ VATV  Q     R+  G     +  +  YLID+VTG IL RV H + +GPVH++ SEN VV  +++ + ++ EMSVLE++++   +D  DV +L           +SFS   L +  Q+Y F + ++ +SV+ T  GIT K  LVG + +QV  L++RF+D +R  +  T  EREEG+IP    LP+ P   L++   V  LRGI S  A LEST LVF+YG+D+FFTR APS+T+D L EDF+Y  L+ T+ ++   I V+  LS+  E+R  W+
Sbjct:  295 LDGTFAQSFLQHI---NSKEIRVRVLSGKEWIETAEETVEVDP-----NKGGVQKVFMNAYIKTDRSRGFRVLIVGQDHSLALLQQGKVVWSREEALASVVDTLTAELPLEKAGVSVAEVEHDLYEWLKGHVLRLKSTL--MLATAEEQTALQAL-RLNNADKTKMTRDHNGFRKLIVVLTSSGKLFALHTGNGGIVWSRFIPELSTKGSLKLYPWRIPHKHVDENAVALVLGSSHDGTGFAAWVDMLTGSVQ--ETLALPYSVKVALALPVVDSSERRLHLLIDDQNKAHLYPTSDESLSLFEKYMQNVYFYIADKEAGQIEGYNIKSQVDAGEEGGLVFQSQKIWSVLFPKDSETIAAITTRRADEMVHTQAKVLGNRDVWYKYLNKNMVFVATVTPQ---DSRV--GAANPEETWLVAYLIDSVTGQILHRVSHAHAQGPVHVVFSENWVVYCYFNVRNHRHEMSVLEVYDKS--ADGKDVLQLMLGRYNASVPFSSFSPRNLEVKGQSYFFPSTVRTMSVTFTARGITGKQILVGTIGNQVIALDKRFLDPRRSADP-TPMEREEGVIPLSEGLPLFPQSYLTHAARVEELRGIISVPARLESTCLVFAYGIDLFFTRTAPSRTYDSLTEDFSYALLLITIVVLXXAIAVSMVLSQRKELREKWK 942          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A176VXH6_MARPO (ER membrane protein complex subunit 1 n=2 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A176VXH6_MARPO)

HSP 1 Score: 350 bits (899), Expect = 1.030e-101
Identity = 221/635 (34.80%), Postives = 350/635 (55.12%), Query Frame = 3
Query: 1077 VDFVNHGG-VAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYPSLL------NRLGPQLQDLLASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQTGS-VEDI------WRL---QCYKEHSDCLVFSTTLSITPTTTIRRLNGLTGAVDL-SSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASG---------EYRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIGET-LMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDV----------SELTSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            V   +H G + ++F + + +      FR L+V +D SLS+LQ  +++WTR++ LA+I      +LP +       E    L      + L  +    LASA+ L A + +      D T++  D  GFRKL++ +T+ GKV AL +  G IVW  +    +  S +  +      W++       E+   LV   +  I+ +T I     +    +L SS +  P +L+  I LP+ DT    LH+ +D + K  V+P  +E++SLF KH  NV +H+     G + GY +K    G          +    +W+V FP E E I+ V  +  +E + +  + +G   ++YKYLN +++ VATV   P A   +  G  T  +  +  YLIDTVTG +L RV H + +GPVH + +EN VV H+++ + Y++EMSV+E++++    D G +          S ++S+S+P + +  QTY F   +KA++V+ T  GIT KH LVG V+DQV  L++RF D +R T + +Q EREEG+IP    +P+ P   +++   V GLRGI +  A LESTSLVF+YG+D+FFTR APS+T+D L EDF+Y  L+ T+  +++GI VT  LS+  E+   W+
Sbjct:  372 VSLESHRGLIRKVFLNAYLRTDRSYGFRALVVGEDDSLSLLQQGEVVWTREDGLASIIDTWTSELPLERDRHPVSEVEHDLADWLRGHWLKLKATLFLASAEELAAVQAL-RLHSSDKTKMARDHNGFRKLLIVLTKAGKVIALHTGDGRIVWSVLLPSLRAESGISKVPLKLMPWQVPHQHALDENPVVLVVGRSKGISDSTGILSWVDVYKGKELRSSKLNFPVKLM--IPLPFTDTSEQRLHLFIDDKQKAHVFPATEESLSLFLKHKANVVYHIVDKEKGTIVGYTIKNMVDGITEGETDGHVFHTEPIWSVIFPSETEVISTVVTRRPDEAVHTQSKILGSRDVLYKYLNKNMIFVATVT--PKAAQHI--GSATPEEAGLVAYLIDTVTGRVLHRVSHPFMQGPVHAVFNENWVVYHYFNLKMYRYEMSVIEIYDQNRMGDKGVLQLMLGRHNASSPVSSYSIPSIEVKTQTYFFTFSVKAMTVTSTARGITGKHILVGTVNDQVLALDKRFFDPRR-TVSPSQAEREEGIIPLTDAIPIFPQSYITHVHQVEGLRGILTVPARLESTSLVFTYGLDLFFTRTAPSRTYDSLTEDFSYALLLITIVALIIGIVVTWILSERKELGEKWK 998          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A5C7HZ33_9ROSI (ER membrane protein complex subunit 1 n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7HZ33_9ROSI)

HSP 1 Score: 342 bits (878), Expect = 7.270e-99
Identity = 227/638 (35.58%), Postives = 356/638 (55.80%), Query Frame = 3
Query: 1095 GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPA--DSTFAATQEYPSLLNRLGPQLQDL-----LASAKSLLAFRGVF--SARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFR--------DQQTGSVEDIWRL---QCYKEHSDCLV-----FSTT----LSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGE------YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIR-TIGETLMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            G V ++F + + +      FR LIV +D SL ++Q  +++W R+++LA+I  V   +LP   D    A  E+ +L   L   L  L     LASA+ ++A + +   S++K   TR   D  GFRKL++ +T+ GK +AL S  G +VW  +          D  TG     W++       E+   LV     FS+     LS     T + LN L    DL+      H +++ I LP+ D+    LH+LVD   +V +YP   EA S F++ + N+Y++     +G +KG+ +K +  G+      Y    +W++ FP E E I A   +  NEV+ +  + ++ + +MYKY++ +LL VATV   P A   +  G     + S+  YLIDTV+G IL R+ H   +GPVH + SEN VV H+++ + +++EMSV+E++++   +++ DV +L           +S+S P +    Q+Y F   +KA++V+ T  GITSK  L+G + DQV  L++RF+D +R     TQ E+EEG+IP    LP+ P   ++++  V GLRGI +  A LEST+LVFSYGVD+FFTR+APS+T+D L EDF+Y  L+ T+  ++  IFVT  LS+  E+R  WR
Sbjct:  366 GHVHKVFVNNYVRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDSLASIIDVTTSELPVEKDGVSVAKVEH-NLFEWLKGHLLKLKGTLMLASAEDVVAIQAIRLKSSKKSKMTR---DHNGFRKLLIVLTKAGKFFALHSGDGRVVWSLLLPSLRKSEACDNPTGLNVYQWQIPHHHAMDENPSVLVVGRCGFSSNAPGVLSFVDAYTGKELNSL----DLA------HSIVQVIPLPFTDSTEQRLHLLVDADRRVHLYPKTPEAKSTFEQEISNIYWYSVEADNGIIKGHVIKSKCIGKGADDFCYDTGNLWSIVFPSESEKIIATVTRKPNEVVHTQAKVSVDQDVMYKYISKNLLFVATV--SPKASGTI--GSVDPEESSLVAYLIDTVSGRILHRMTHHGAQGPVHAVFSENWVVYHYFNLRAHRYEMSVIEIYDQ-SRAENKDVLKLILGKHNLTAPVSSYSRPEVVTKSQSYYFTHSVKAIAVTLTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINP-TQAEKEEGIIPLTDALPIIPQSYITHSLKVEGLRGIITVPAKLESTTLVFSYGVDLFFTRLAPSRTYDSLTEDFSYALLLITIVALVAAIFVTWVLSEKKELREKWR 983          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: UPI001FB12CC5 (ER membrane protein complex subunit 1 n=1 Tax=Impatiens glandulifera TaxID=253017 RepID=UPI001FB12CC5)

HSP 1 Score: 342 bits (877), Expect = 9.530e-99
Identity = 218/635 (34.33%), Postives = 348/635 (54.80%), Query Frame = 3
Query: 1065 LIPHVDFVNHGG-VAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYPSLL-----NRLGPQLQDLLASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRD-QQTGSVEDIWRLQCYK---EHSDCLVFSTTLSITPTTTIRRLN-GLTGAVDL-SSTVILP----HQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGE------YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIGET-LMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDV-----------SELTSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            LI  +D     G V ++F + + K      FR L+V +D SL +LQ  +++WTR++ LA+I  V   +LP +    +  +    L       L      L+ +    +A       +    +++  D  GFRKL++ +++ GK++AL +  G IVW  + R  Q++   E    L  Y     H   L  + ++ +      +  N G+   VD+ +   + P    H + + + LP+ D+    LH+L+DT     +YP + EA+ +F +   NVY++      G +KG+ +K   + E      + +  +W++ FP E E I A   +  NEV+ +  + + E  LMYKY++ +L+ VATV   P A   +  G  T  +  + VYLIDTVTG IL R++H   +GPVH + SEN VV H+++ + +++EMSV+E++++   +D+ DV           S ++S+S P +    Q+Y F   +K ++V+ T  GITS+H L+G V DQV  L++RFVD +R T   TQ EREEGL+P    LP+ P   +++   V GLRGI +    LESTSLVF+YGVD+FFTR+APS+T+D L EDF+Y  L+ T+ ++LV IFVT  LS+  E+   WR
Sbjct:  352 LIERIDMTEKRGLVHKVFLNNYIKTDRSYGFRALVVMEDHSLLLLQQGEIVWTREDGLASIIDVTTSELPIEKQGVSVAKVEQTLFEWLKGHLLKVKGTLMLATPDEVAEIQKIRLQSSGKSKMTRDHNGFRKLLIVLSKSGKIFALHTGDGRIVWSQLLRSLQKSEGCEFPVGLNLYHWQVPHHHALDENPSVLVVGRCGSKLDNPGVLSVVDVYTGNEVNPWGHVHSISQVVPLPFTDSTEQRLHLLIDTHGNAHLYPTNTEALEIFQREFTNVYWYSVEADTGIIKGHTLKSTCTLEVEDKYCFSSRDLWSIVFPSESEKIIATVTRKPNEVVHTQAKVMAEQELMYKYISKNLVFVATVT--PKASGEI--GSATPDESQLVVYLIDTVTGRILNRMVHHGSQGPVHAVFSENWVVYHYFNLRAHRYEMSVIEIYDQ-SRADNKDVLKLIVGKHNLTSPVSSYSRPEILTKSQSYFFAHTVKVVAVTSTAKGITSRHLLIGTVGDQVLALDKRFVDPRR-TANPTQAEREEGLVPLTDSLPIIPQSYVTHGLKVEGLRGIVTIPTKLESTSLVFTYGVDLFFTRIAPSKTYDSLTEDFSYALLLITIFVLLVAIFVTWYLSEKKELEEKWR 980          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A7J8Y3E2_GOSAI (ER membrane protein complex subunit 1 n=2 Tax=Gossypium TaxID=3633 RepID=A0A7J8Y3E2_GOSAI)

HSP 1 Score: 333 bits (854), Expect = 1.730e-98
Identity = 211/626 (33.71%), Postives = 347/626 (55.43%), Query Frame = 3
Query: 1095 GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYP-SLLNRLGPQLQDL-----LASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRD-QQTGSVEDIWRLQCYK----------EHSDCLVFSTTLSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGEYRAVL------VWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIGET-LMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDV-----------SELTSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            G V ++F + + +      FR LIV +D SL +LQ  +++W+R++ LA+I  V   +LP +    +  +   +L   L   +  L     LAS + + A + +   +  + +++  D  GFRKL++ +T  GK++AL +  G IVW  + R   ++ + +    L  Y+          E+   LV S     + T  +          +LSS + L H +++ I LPY D+    LH+L++      +YP   EA+S+F +   N+Y++     +G +KG+A+K + +G+           +W+V FP E E I A   +  NEV+ +  + + +  +MYKY++ +LL VATV  +    +    G  T  +  +  YLIDTVTG IL RV H   +GPVH + SEN VV H+++ + +++EMSV+E++++   +D+ DV           S ++ FS P +    Q+Y F   +KA++V+ T  GITSK  L+G + DQV  L++RF+D +R     TQ E+EEG+IP    LP+ P   +++   V GLRGI +  A LEST+LVF++GVD+FFT++APS+T+D L EDF+Y  L+ T+  ++  IFVT RLS+  E++  WR
Sbjct:   48 GLVHKVFINNYIRTDRSYGFRVLIVMEDHSLLLLQQGEIVWSREDGLASIIDVTTSELPVERNGVSVAKVEHNLFEWLKGHMLKLKGTLMLASPEDMAAIQSM-RLKSSEKSKMTRDHNGFRKLLIVLTRAGKLFALHTGDGRIVWSHLLRSLHKSEACQSPIGLNLYQWQVPHHHAMDENPSVLVVSRCGPSSDTPGVLSFVDTYTGKELSS-LSLDHAVVQVIPLPYTDSTEQRLHLLINADKHAHLYPKTSEALSIFKREFLNIYWYSVEDQNGIIKGHALKCKCTGKVADEFCFDTRDLWSVVFPSESEKIVATVTRKLNEVVHTQAKVVADQDVMYKYISRNLLFVATVAPKGSGEI----GSVTPEESWLVAYLIDTVTGRILHRVTHHGSQGPVHAVFSENWVVYHYFNLRAHRYEMSVIEIYDQ-SRADNKDVWKLVLGKHNLTSPISLFSRPEVITKSQSYFFTHSLKAIAVTSTAKGITSKQLLLGTIGDQVLALDKRFLDPRRTVNP-TQAEKEEGIIPLTDSLPIIPQSYVTHALRVEGLRGIITVPAKLESTTLVFAHGVDLFFTQLAPSRTYDSLTEDFSYALLLITIVALVAAIFVTWRLSERKELQEKWR 665          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: UPI001263152D (ER membrane protein complex subunit 1 n=2 Tax=Anacardiaceae TaxID=4011 RepID=UPI001263152D)

HSP 1 Score: 341 bits (874), Expect = 2.620e-98
Identity = 216/634 (34.07%), Postives = 351/634 (55.36%), Query Frame = 3
Query: 1095 GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYPSLLNRLGPQLQDL-----LASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQTGSVED------IWRLQCYKEHS-----DCLVFS---------TTLSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGE------YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIR-TIGETLMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            G V ++F + + +      FR LIV +D SL +LQ  +++W R++ALA+I  V   +LP D   +  +   +L++ L   +  L     LAS + ++A + +   +  + ++L  D  GFRKL++ +T+ GK++AL S  G +VW  +    +   V D      +++ Q    H+       LV             LS   T T + LN L    DL       H +++ I LP  D+    LH+LVD   +V +YP   EA ++F +   N+Y++     +  +KG+ +KR   GE      + +  +W++ FP E E I A  ++ +NEV+ +  + T  + +MYKY++ +LL VATV  +   G+    G     + S+  YLIDTVTG IL R+ H   +GPVH + SEN VV H+++ + ++FEMSV+E++++   +++ DV +L           +S+S P +    Q+Y F   +KA++V+ T  GITSK  L+G + DQV  L++RFVD +R     +Q E+EEG+IP    LP+ P   +++   V GLR I +  A LEST+LVF+YG+D+FFT++APS+T+D L EDF+Y  L+ T+  ++  IFVT  LS+  E++  WR
Sbjct:  366 GLVHKVFINNYIRTDRSHGFRALIVMEDHSLLLLQQGKIVWNREDALASIIDVTTSELPVDKAVSVAKGEHNLIDWLKGHILKLKGTLMLASPEDVVAIQAI-RLKSSEKSKLTRDHNGFRKLLIVLTKAGKIFALHSGDGRVVWSLLLPSLRKSKVCDCPTGLNLYQWQVPHHHAMDQNPSVLVVGKCGYSSNAPAVLSFVDTYTGKELNSL----DLG------HSVVQIIPLPLTDSTEQRLHLLVDADRRVHLYPRTPEARTIFQQEFSNIYWYSVEADNSIIKGHVIKRTCIGEVADDFCFESGDLWSIVFPLESEKIIATVSRKSNEVVHTQAKVTSDQDVMYKYISKNLLFVATVSPKASVGI----GSADPEEASLFAYLIDTVTGRILHRMTHHGAQGPVHAVFSENWVVYHYFNLRAHRFEMSVIEIYDQ-SRAENKDVWKLVVGKHNLTAPVSSYSRPEVVTKSQSYFFTHSVKAIAVTLTAKGITSKQLLIGTIGDQVLALDKRFVDPRRTVNP-SQAEKEEGIIPLTDFLPIIPQSYVTHALKVEGLRNIVTVPAKLESTTLVFAYGMDLFFTQLAPSRTYDSLTEDFSYALLLITIIALVAAIFVTWILSERKELQDKWR 982          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A2U1Q2T0_ARTAN (ER membrane protein complex subunit 1 n=2 Tax=Artemisia annua TaxID=35608 RepID=A0A2U1Q2T0_ARTAN)

HSP 1 Score: 340 bits (873), Expect = 3.830e-98
Identity = 214/626 (34.19%), Postives = 351/626 (56.07%), Query Frame = 3
Query: 1089 NHGGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYP-SLLNRLGPQLQDL-----LASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRD--------QQTGSVEDIWRLQCY----KEHSDCLVFSTTLSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGE---YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIG-ETLMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            N G V ++F + + +      FR LIV +D SL +LQ  +++W+R++ LA+I  V   +LP +    +  +   SL   L   +  L     LA+   L+  + +   R  + +++  D  GFR+L++ +T+ GK++AL +  G +VW ++ +         Q TG     W++  +       S  +V     S++  T +  ++  TG    +  ++  H  ++ I LP+ D+    LH+L+D   +  +YP   EA  +F +   NVY++      G ++GY VK + + +   + A  +W+V FP E E I A   +  NEV+ +  + I  E +MYKY++ ++L VATV   P A   +  G  T  +  + V+L+DTVTG IL R+ H   +GPVH + SEN VV H+++ + +++EMSV+E++++   +++ DV +L           +S+S P +    Q+Y F   +KA+SV+ T  GITSKH L+G V DQV  L++RFVD +R     TQ E+EEGL+P    LP+ P   +++   V GLRGI +  A LEST+LVF+YGVD+F+TR+APS+T+D L EDFNY  L+ T+  ++V IFVT  LS+  +++  WR
Sbjct:  369 NRGFVHKIFINSYVRTDRSNGFRALIVMEDHSLLLLQQGEIVWSREDGLASIIDVTTAELPVEKIGVSVAKVEHSLFEWLKGHVLKLKGTLMLATPDELVEIQKI-RLRSSEKSKMTRDHNGFRRLLVVLTKAGKLFALHTGDGRVVWSSLLQSLRSSEQCSQPTGLKLHQWQIPHHHALDNNPSVLVVGRCGSSLSSATAMSIVDAHTGKEVQN--MVPTHSTVQVIYLPFTDSTEQQLHLLIDADNRAHLYPKTPEAAEIFQRESANVYWYSVETEAGILRGYGVKTKCNLDEYCFEARNLWSVVFPSESEKIIATVTRKANEVVHTQAKVIADEDVMYKYVSKNMLFVATV--SPKASGPI--GSATPDEAVLAVHLVDTVTGRILHRMTHLGSQGPVHAVLSENWVVYHYFNLRAHRYEMSVIEIYDQ-SRAENKDVLKLIVGKHNLTTPVSSYSRPEVMTKSQSYFFTHSVKAISVTSTAKGITSKHLLIGTVGDQVLALDKRFVDPRRSLNP-TQAEKEEGLLPLTDALPIIPQSYVTHAFKVEGLRGIETVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFNYALLLLTIVALVVAIFVTWVLSERKDLQDKWR 985          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A067GJ73_CITSI (ER membrane protein complex subunit 1 n=6 Tax=Citrus TaxID=2706 RepID=A0A067GJ73_CITSI)

HSP 1 Score: 340 bits (871), Expect = 6.830e-98
Identity = 214/632 (33.86%), Postives = 350/632 (55.38%), Query Frame = 3
Query: 1095 GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYP-SLLNRLGPQLQDL-----LASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQ---TGSVEDIWRLQCYKEHS-----------DCLVFSTT---LSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGE------YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIGET-LMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            G V ++F + + +      FR LIV +D SL ++Q  +++W R++ALA+I  V   +LP +    +  +   SL   L   +  L     LAS + + A + +   +  + +++  D  GFRKL++ +T+  K++AL S  G +VW  +    +   + +  ++++ Q    H+            C V S     LS   T T + LN             L H  ++ + LP+ D+    LH+LVD   ++ +YP   EA+S+F +   N+Y++     +G +KG+AVK + +GE      +   ++W++ FP E E I A  ++  NEV+ +  +   E  +MYKY++ +LL VATV   P A   +  G     +  + VYLIDT+TG IL R+ H   +GPVH + SEN VV H+++ + +++EMSV E++++   +++ DV +L           +S+S P +    QTY F   +KA++V+ T  GITSK  L+G + DQV  L++RF+D +R     TQ E+EEG+IP    LP+ P   ++++  V GLRGI +  A LEST+LVF+YGVD+F+TR+APS+T+D L EDF+Y  L+ T+  ++  IFVT  LS+  E+R  WR
Sbjct:  367 GLVHKVFINNYLRTDRSHGFRALIVMEDHSLLLVQQGKIVWNREDALASIIDVTTSELPVEKEGVSVAKVEHSLFEWLKGHMLKLKGTLMLASPEDVAAIQAI-RLKSSEKSKMTRDHNGFRKLLIVLTKARKIFALHSGDGRVVWSLLLHKSEACDSPTELNLYQWQTPHHHAMDENPSVLVVGRCGVSSKAPAILSFVDTYTGKELNSFD----------LVHSAVQVMPLPFTDSTEQRLHLLVDDDRRIHLYPKTSEAISIFQQEFSNIYWYSVEADNGIIKGHAVKSKCAGEVLDDFCFETRVLWSIIFPMESEKIIAAVSRKQNEVVHTQAKVTSEQDVMYKYISKNLLFVATVA--PKASGHI--GSADPDEAWLVVYLIDTITGRILHRMTHHGAQGPVHAVLSENWVVYHYFNLRAHRYEMSVTEIYDQ-SRAENKDVLKLVLGKHNLTAPVSSYSRPEITTKSQTYFFTHSVKAVAVTSTAKGITSKQLLIGTIGDQVLALDKRFLDPRRSINP-TQAEKEEGIIPLADSLPIIPQSYVTHSLKVEGLRGILTVPAKLESTTLVFAYGVDLFYTRLAPSRTYDSLTEDFSYALLLLTIVALVAAIFVTWVLSEKKELREKWR 981          
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Match: A0A2J6LU18_LACSA (ER membrane protein complex subunit 1 n=2 Tax=Lactuca TaxID=4235 RepID=A0A2J6LU18_LACSA)

HSP 1 Score: 340 bits (871), Expect = 6.950e-98
Identity = 211/623 (33.87%), Postives = 353/623 (56.66%), Query Frame = 3
Query: 1095 GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATIKQVEFVQLPADSTFAATQEYP-SLLNRL-GPQLQ---DLLASAKSLLAFRGVFSARKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQ--------TGSVEDIWRLQCY----KEHSDCLVFSTTLSITPTTTIRRLNGLTGAVDLSSTVILPHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNVYFHLASVSDGNVKGYAVKRQASGE---YRAVLVWTVDFPKEIESIAAVAAKPNNEVIQSSIRTIG-ETLMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDPSVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEMSVLELFEERDPSDSGDVSEL-----------TSFSLPPLHLIQQTYVFRTGIKALSVSETQAGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMRELPVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQTFDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR 2867
            G V ++F + + +      FR LIV +D SL +LQ  +++W+RD+ LA++  V   +LP +    +  +   SL   L G  L+    L+ +    +A       +  + +++  D  GFR+L++ +T+  K++AL S  G+IVW  + +  +        T      W++  +    K  S  +V    LS++  +T+  ++  TG    +  V   H  ++ I LP+ D+    LH+L+D + +  +YP   EA+ +F +   NVY++      G ++GY VK +  G+   + +  +W++ FP E E I +  ++  NEV+ +  + I  E +MYKY++ ++L VATV   P A   +  G  T  +  + V+L+DT+TG IL R+ H   +GPVH + SEN VV H+++ + +++EMSV+E++++   +++ DV +L           +S+S P +    Q+Y F   +KA+SV+ T  GITSKH L+G ++DQV  L++RFVD +R     TQ E+EEGL+P    LP+ P   +++   V GLRGI +  A LEST+LVF+YGVD+FFTR+APS+T+D L EDFNY  L+ T+  ++V IFVT  LS+  +++  WR
Sbjct:  368 GFVHKIFINNYVRTDRSHGFRALIVMEDHSLLLLQQGEIVWSRDDGLASVIDVTTSELPVEKVGVSVAKVEDSLFEWLKGHMLKLKGTLMLATPDEIAIIQKIKLQSSEKSKMTRDHNGFRRLLIVLTKSRKLFALHSGDGHIVWSTLLQSLRQSDECPNPTALKLHPWQIPHHHALDKNPSVLVVGRCGLSLSSPSTLSVVDTYTGKE--ARNVGPGHSTVQVIPLPFSDSSEQQLHLLIDDENRAHLYPRSREAVEIFQRESQNVYWYDVETEVGILRGYGVKSKCDGDEYCFESRNLWSIVFPSESEKIISTVSRKGNEVVHTQAKVIADEDVMYKYISKNILFVATV--SPKASGPI--GSATPDESLLVVHLVDTITGRILHRMSHLGSQGPVHAVLSENWVVYHYFNLRAHRYEMSVIEIYDQ-SRAENKDVLKLIVGKHNLTTPVSSYSRPEVSTKSQSYFFTHSVKAISVTSTAKGITSKHLLIGTIADQVLALDKRFVDPRRSLNP-TQAEKEEGLLPLTDTLPIIPQSYVTHAFKVEGLRGIETIPAKLESTTLVFAYGVDLFFTRLAPSRTYDSLTEDFNYALLLLTIVALVVAIFVTWVLSERKDLQEKWR 982          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10079.228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A251U7I1_HELAN5.760e-10435.53ER membrane protein complex subunit 1 n=4 Tax=Heli... [more]
D8QUF2_SELML1.810e-10235.43ER membrane protein complex subunit 1 n=4 Tax=Sela... [more]
A0A176VXH6_MARPO1.030e-10134.80ER membrane protein complex subunit 1 n=2 Tax=Marc... [more]
A0A5C7HZ33_9ROSI7.270e-9935.58ER membrane protein complex subunit 1 n=1 Tax=Acer... [more]
UPI001FB12CC59.530e-9934.33ER membrane protein complex subunit 1 n=1 Tax=Impa... [more]
A0A7J8Y3E2_GOSAI1.730e-9833.71ER membrane protein complex subunit 1 n=2 Tax=Goss... [more]
UPI001263152D2.620e-9834.07ER membrane protein complex subunit 1 n=2 Tax=Anac... [more]
A0A2U1Q2T0_ARTAN3.830e-9834.19ER membrane protein complex subunit 1 n=2 Tax=Arte... [more]
A0A067GJ73_CITSI6.830e-9833.86ER membrane protein complex subunit 1 n=6 Tax=Citr... [more]
A0A2J6LU18_LACSA6.950e-9833.87ER membrane protein complex subunit 1 n=2 Tax=Lact... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10079contigH-fluviatilis_contig10079:2962..7097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score357.8
Seed ortholog evalue1.4e-95
Seed eggNOG ortholog88036.EFJ36284
EggNOG free text desc.ER membrane protein complex subunit
EggNOG OGs37HQA@33090,3GG3C@35493,KOG2103@1,KOG2103@2759
COG Functional cat.E
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons40
Model size2894
Cds size2526
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10079.228.1prot_H-fluviatilis_contig10079.228.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10079 3453..7073 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.6919737-UTR-H-fluviatilis_contig10079:2961..30181622929021.6919737-UTR-H-fluviatilis_contig10079:2961..3018Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 2962..3018 +
1691135152.9208121-UTR-H-fluviatilis_contig10079:2961..30181691135152.9208121-UTR-H-fluviatilis_contig10079:2961..3018Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 2962..3018 +
1622929021.7083457-UTR-H-fluviatilis_contig10079:3050..31841622929021.7083457-UTR-H-fluviatilis_contig10079:3050..3184Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3051..3184 +
1691135152.9335103-UTR-H-fluviatilis_contig10079:3050..31841691135152.9335103-UTR-H-fluviatilis_contig10079:3050..3184Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3051..3184 +
1622929021.7188678-UTR-H-fluviatilis_contig10079:3214..32491622929021.7188678-UTR-H-fluviatilis_contig10079:3214..3249Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3215..3249 +
1691135152.9436796-UTR-H-fluviatilis_contig10079:3214..32491691135152.9436796-UTR-H-fluviatilis_contig10079:3214..3249Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3215..3249 +
1622929021.735945-UTR-H-fluviatilis_contig10079:3277..33111622929021.735945-UTR-H-fluviatilis_contig10079:3277..3311Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3278..3311 +
1691135152.952758-UTR-H-fluviatilis_contig10079:3277..33111691135152.952758-UTR-H-fluviatilis_contig10079:3277..3311Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3278..3311 +
1622929021.7495959-UTR-H-fluviatilis_contig10079:3338..33811622929021.7495959-UTR-H-fluviatilis_contig10079:3338..3381Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3339..3381 +
1691135152.9618754-UTR-H-fluviatilis_contig10079:3338..33811691135152.9618754-UTR-H-fluviatilis_contig10079:3338..3381Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3339..3381 +
1622929021.765029-UTR-H-fluviatilis_contig10079:3411..34521622929021.765029-UTR-H-fluviatilis_contig10079:3411..3452Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3412..3452 +
1691135152.971114-UTR-H-fluviatilis_contig10079:3411..34521691135152.971114-UTR-H-fluviatilis_contig10079:3411..3452Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 3412..3452 +
1622929022.3670495-UTR-H-fluviatilis_contig10079:7073..70971622929022.3670495-UTR-H-fluviatilis_contig10079:7073..7097Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 7074..7097 +
1691135153.3201206-UTR-H-fluviatilis_contig10079:7073..70971691135153.3201206-UTR-H-fluviatilis_contig10079:7073..7097Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10079 7074..7097 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.7803094-CDS-H-fluviatilis_contig10079:3452..34751622929021.7803094-CDS-H-fluviatilis_contig10079:3452..3475Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3453..3475 +
1691135152.9833512-CDS-H-fluviatilis_contig10079:3452..34751691135152.9833512-CDS-H-fluviatilis_contig10079:3452..3475Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3453..3475 +
1622929021.7996993-CDS-H-fluviatilis_contig10079:3508..35871622929021.7996993-CDS-H-fluviatilis_contig10079:3508..3587Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3509..3587 +
1691135152.9948063-CDS-H-fluviatilis_contig10079:3508..35871691135152.9948063-CDS-H-fluviatilis_contig10079:3508..3587Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3509..3587 +
1622929021.814318-CDS-H-fluviatilis_contig10079:3615..36511622929021.814318-CDS-H-fluviatilis_contig10079:3615..3651Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3616..3651 +
1691135153.0038967-CDS-H-fluviatilis_contig10079:3615..36511691135153.0038967-CDS-H-fluviatilis_contig10079:3615..3651Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3616..3651 +
1622929021.8318017-CDS-H-fluviatilis_contig10079:3735..38151622929021.8318017-CDS-H-fluviatilis_contig10079:3735..3815Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3736..3815 +
1691135153.0127573-CDS-H-fluviatilis_contig10079:3735..38151691135153.0127573-CDS-H-fluviatilis_contig10079:3735..3815Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3736..3815 +
1622929021.860353-CDS-H-fluviatilis_contig10079:3860..39451622929021.860353-CDS-H-fluviatilis_contig10079:3860..3945Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3861..3945 +
1691135153.0227184-CDS-H-fluviatilis_contig10079:3860..39451691135153.0227184-CDS-H-fluviatilis_contig10079:3860..3945Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3861..3945 +
1622929021.8777833-CDS-H-fluviatilis_contig10079:3976..40831622929021.8777833-CDS-H-fluviatilis_contig10079:3976..4083Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3977..4083 +
1691135153.0299168-CDS-H-fluviatilis_contig10079:3976..40831691135153.0299168-CDS-H-fluviatilis_contig10079:3976..4083Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 3977..4083 +
1622929021.893424-CDS-H-fluviatilis_contig10079:4119..41861622929021.893424-CDS-H-fluviatilis_contig10079:4119..4186Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4120..4186 +
1691135153.0371542-CDS-H-fluviatilis_contig10079:4119..41861691135153.0371542-CDS-H-fluviatilis_contig10079:4119..4186Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4120..4186 +
1622929021.9060478-CDS-H-fluviatilis_contig10079:4217..43181622929021.9060478-CDS-H-fluviatilis_contig10079:4217..4318Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4218..4318 +
1691135153.0451307-CDS-H-fluviatilis_contig10079:4217..43181691135153.0451307-CDS-H-fluviatilis_contig10079:4217..4318Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4218..4318 +
1622929021.9218333-CDS-H-fluviatilis_contig10079:4346..43661622929021.9218333-CDS-H-fluviatilis_contig10079:4346..4366Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4347..4366 +
1691135153.0567553-CDS-H-fluviatilis_contig10079:4346..43661691135153.0567553-CDS-H-fluviatilis_contig10079:4346..4366Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4347..4366 +
1622929021.9398396-CDS-H-fluviatilis_contig10079:4442..44951622929021.9398396-CDS-H-fluviatilis_contig10079:4442..4495Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4443..4495 +
1691135153.0653548-CDS-H-fluviatilis_contig10079:4442..44951691135153.0653548-CDS-H-fluviatilis_contig10079:4442..4495Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4443..4495 +
1622929021.9593616-CDS-H-fluviatilis_contig10079:4526..45721622929021.9593616-CDS-H-fluviatilis_contig10079:4526..4572Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4527..4572 +
1691135153.0843222-CDS-H-fluviatilis_contig10079:4526..45721691135153.0843222-CDS-H-fluviatilis_contig10079:4526..4572Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4527..4572 +
1622929021.9732764-CDS-H-fluviatilis_contig10079:4601..46691622929021.9732764-CDS-H-fluviatilis_contig10079:4601..4669Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4602..4669 +
1691135153.0928173-CDS-H-fluviatilis_contig10079:4601..46691691135153.0928173-CDS-H-fluviatilis_contig10079:4601..4669Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4602..4669 +
1622929021.9891613-CDS-H-fluviatilis_contig10079:4698..47881622929021.9891613-CDS-H-fluviatilis_contig10079:4698..4788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4699..4788 +
1691135153.101526-CDS-H-fluviatilis_contig10079:4698..47881691135153.101526-CDS-H-fluviatilis_contig10079:4698..4788Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4699..4788 +
1622929022.0001676-CDS-H-fluviatilis_contig10079:4815..49151622929022.0001676-CDS-H-fluviatilis_contig10079:4815..4915Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4816..4915 +
1691135153.1100628-CDS-H-fluviatilis_contig10079:4815..49151691135153.1100628-CDS-H-fluviatilis_contig10079:4815..4915Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4816..4915 +
1622929022.011655-CDS-H-fluviatilis_contig10079:4946..49961622929022.011655-CDS-H-fluviatilis_contig10079:4946..4996Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4947..4996 +
1691135153.1198719-CDS-H-fluviatilis_contig10079:4946..49961691135153.1198719-CDS-H-fluviatilis_contig10079:4946..4996Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 4947..4996 +
1622929022.0239153-CDS-H-fluviatilis_contig10079:5024..51391622929022.0239153-CDS-H-fluviatilis_contig10079:5024..5139Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5025..5139 +
1691135153.1347263-CDS-H-fluviatilis_contig10079:5024..51391691135153.1347263-CDS-H-fluviatilis_contig10079:5024..5139Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5025..5139 +
1622929022.0369651-CDS-H-fluviatilis_contig10079:5171..52451622929022.0369651-CDS-H-fluviatilis_contig10079:5171..5245Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5172..5245 +
1691135153.1458805-CDS-H-fluviatilis_contig10079:5171..52451691135153.1458805-CDS-H-fluviatilis_contig10079:5171..5245Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5172..5245 +
1622929022.0478761-CDS-H-fluviatilis_contig10079:5271..53141622929022.0478761-CDS-H-fluviatilis_contig10079:5271..5314Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5272..5314 +
1691135153.1546931-CDS-H-fluviatilis_contig10079:5271..53141691135153.1546931-CDS-H-fluviatilis_contig10079:5271..5314Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5272..5314 +
1622929022.0594635-CDS-H-fluviatilis_contig10079:5345..54671622929022.0594635-CDS-H-fluviatilis_contig10079:5345..5467Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5346..5467 +
1691135153.1650667-CDS-H-fluviatilis_contig10079:5345..54671691135153.1650667-CDS-H-fluviatilis_contig10079:5345..5467Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5346..5467 +
1622929022.0755277-CDS-H-fluviatilis_contig10079:5493..55711622929022.0755277-CDS-H-fluviatilis_contig10079:5493..5571Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5494..5571 +
1691135153.1760015-CDS-H-fluviatilis_contig10079:5493..55711691135153.1760015-CDS-H-fluviatilis_contig10079:5493..5571Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5494..5571 +
1622929022.0954757-CDS-H-fluviatilis_contig10079:5598..56791622929022.0954757-CDS-H-fluviatilis_contig10079:5598..5679Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5599..5679 +
1691135153.1831727-CDS-H-fluviatilis_contig10079:5598..56791691135153.1831727-CDS-H-fluviatilis_contig10079:5598..5679Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5599..5679 +
1622929022.1089861-CDS-H-fluviatilis_contig10079:5706..57481622929022.1089861-CDS-H-fluviatilis_contig10079:5706..5748Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5707..5748 +
1691135153.1906161-CDS-H-fluviatilis_contig10079:5706..57481691135153.1906161-CDS-H-fluviatilis_contig10079:5706..5748Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5707..5748 +
1622929022.1205359-CDS-H-fluviatilis_contig10079:5773..58361622929022.1205359-CDS-H-fluviatilis_contig10079:5773..5836Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5774..5836 +
1691135153.1984231-CDS-H-fluviatilis_contig10079:5773..58361691135153.1984231-CDS-H-fluviatilis_contig10079:5773..5836Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5774..5836 +
1622929022.1376188-CDS-H-fluviatilis_contig10079:5868..59181622929022.1376188-CDS-H-fluviatilis_contig10079:5868..5918Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5869..5918 +
1691135153.2068694-CDS-H-fluviatilis_contig10079:5868..59181691135153.2068694-CDS-H-fluviatilis_contig10079:5868..5918Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5869..5918 +
1622929022.1806917-CDS-H-fluviatilis_contig10079:5947..60331622929022.1806917-CDS-H-fluviatilis_contig10079:5947..6033Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5948..6033 +
1691135153.216869-CDS-H-fluviatilis_contig10079:5947..60331691135153.216869-CDS-H-fluviatilis_contig10079:5947..6033Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 5948..6033 +
1622929022.1991093-CDS-H-fluviatilis_contig10079:6061..61361622929022.1991093-CDS-H-fluviatilis_contig10079:6061..6136Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6062..6136 +
1691135153.227155-CDS-H-fluviatilis_contig10079:6061..61361691135153.227155-CDS-H-fluviatilis_contig10079:6061..6136Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6062..6136 +
1622929022.2141054-CDS-H-fluviatilis_contig10079:6163..62161622929022.2141054-CDS-H-fluviatilis_contig10079:6163..6216Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6164..6216 +
1691135153.2344377-CDS-H-fluviatilis_contig10079:6163..62161691135153.2344377-CDS-H-fluviatilis_contig10079:6163..6216Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6164..6216 +
1622929022.2308207-CDS-H-fluviatilis_contig10079:6246..62981622929022.2308207-CDS-H-fluviatilis_contig10079:6246..6298Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6247..6298 +
1691135153.241805-CDS-H-fluviatilis_contig10079:6246..62981691135153.241805-CDS-H-fluviatilis_contig10079:6246..6298Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6247..6298 +
1622929022.244432-CDS-H-fluviatilis_contig10079:6325..63771622929022.244432-CDS-H-fluviatilis_contig10079:6325..6377Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6326..6377 +
1691135153.249214-CDS-H-fluviatilis_contig10079:6325..63771691135153.249214-CDS-H-fluviatilis_contig10079:6325..6377Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6326..6377 +
1622929022.2617006-CDS-H-fluviatilis_contig10079:6404..64761622929022.2617006-CDS-H-fluviatilis_contig10079:6404..6476Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6405..6476 +
1691135153.2647479-CDS-H-fluviatilis_contig10079:6404..64761691135153.2647479-CDS-H-fluviatilis_contig10079:6404..6476Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6405..6476 +
1622929022.2779772-CDS-H-fluviatilis_contig10079:6502..65671622929022.2779772-CDS-H-fluviatilis_contig10079:6502..6567Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6503..6567 +
1691135153.274059-CDS-H-fluviatilis_contig10079:6502..65671691135153.274059-CDS-H-fluviatilis_contig10079:6502..6567Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6503..6567 +
1622929022.292658-CDS-H-fluviatilis_contig10079:6594..67551622929022.292658-CDS-H-fluviatilis_contig10079:6594..6755Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6595..6755 +
1691135153.2817574-CDS-H-fluviatilis_contig10079:6594..67551691135153.2817574-CDS-H-fluviatilis_contig10079:6594..6755Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6595..6755 +
1622929022.3099673-CDS-H-fluviatilis_contig10079:6782..68391622929022.3099673-CDS-H-fluviatilis_contig10079:6782..6839Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6783..6839 +
1691135153.2886674-CDS-H-fluviatilis_contig10079:6782..68391691135153.2886674-CDS-H-fluviatilis_contig10079:6782..6839Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6783..6839 +
1622929022.3362591-CDS-H-fluviatilis_contig10079:6866..69391622929022.3362591-CDS-H-fluviatilis_contig10079:6866..6939Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6867..6939 +
1691135153.296366-CDS-H-fluviatilis_contig10079:6866..69391691135153.296366-CDS-H-fluviatilis_contig10079:6866..6939Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6867..6939 +
1622929022.3520486-CDS-H-fluviatilis_contig10079:6966..70731622929022.3520486-CDS-H-fluviatilis_contig10079:6966..7073Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6967..7073 +
1691135153.3049903-CDS-H-fluviatilis_contig10079:6966..70731691135153.3049903-CDS-H-fluviatilis_contig10079:6966..7073Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10079 6967..7073 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10079.228.1

>prot_H-fluviatilis_contig10079.228.1 ID=prot_H-fluviatilis_contig10079.228.1|Name=mRNA_H-fluviatilis_contig10079.228.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=842bp
MTVPPAQAGVVTFHRLWVDESTSRVLVLASSSLSRSLMVYALDASSGVQQ
GEPKSLSQSVPPSASNTVSLSTGVVIQLDKENLMCWSLKNAGAPTTTTTL
KALLTKFDVYNFNAVQDVGVADLQLKSTFLLNTPQFRATVFIAGNLQLQV
VDAPVRVPQGSTIASCGAWEQDEQGGAPVSKRKEKGKPAVAASDETDGKE
LDQPITDAFVIHMLFDKSKEQLSLVIHHADPFEKASSLPPLIPHVDFVNH
GGVAQMFASPFTKATGGVAFRTLIVAQDISLSMLQGDQLMWTRDEALATI
KQVEFVQLPADSTFAATQEYPSLLNRLGPQLQDLLASAKSLLAFRGVFSA
RKMDTTRLVADDFGFRKLILAVTEGGKVYALDSLQGNIVWEAIFRDQQTG
SVEDIWRLQCYKEHSDCLVFSTTLSITPTTTIRRLNGLTGAVDLSSTVIL
PHQLLEAIQLPYRDTHHHALHMLVDTQFKVTVYPNDDEAMSLFDKHVHNV
YFHLASVSDGNVKGYAVKRQASGEYRAVLVWTVDFPKEIESIAAVAAKPN
NEVIQSSIRTIGETLMYKYLNPHLLTVATVRTQPVAGMRLLPGKKTATDP
SVNVYLIDTVTGSILERVIHRYGEGPVHLLQSENVVVCHFWDTQQYQFEM
SVLELFEERDPSDSGDVSELTSFSLPPLHLIQQTYVFRTGIKALSVSETQ
AGITSKHFLVGMVSDQVYGLNRRFVDAKRPTEAITQTEREEGLIPYMREL
PVDPLEMLSYNKTVAGLRGIASSSAFLESTSLVFSYGVDMFFTRVAPSQT
FDMLNEDFNYLFLIGTVTLVLVGIFVTGRLSKGAEVRAAWR*
back to top

mRNA from alignment at H-fluviatilis_contig10079:2962..7097+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10079.228.1 ID=mRNA_H-fluviatilis_contig10079.228.1|Name=mRNA_H-fluviatilis_contig10079.228.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=4136bp|location=Sequence derived from alignment at H-fluviatilis_contig10079:2962..7097+ (Heribaudiella fluviatilis SAG_13_90)
TGTTGATCACCTTGTCGGAAGGCGGTGCGATCGCGCGCGCCTGGAATACT ACCGATGGTATGAATGCAAGGACATCAGTCTCTATCCAGGCCAATTGCGG TGGGACAGTGGATCATACGACGCTGTGTCACACGCACAACGATTGCTTTC ACGATCGGGCAACGGGACCGCCACTGCTCGTGCTGTGTCTCAGTTTCTCA GCCTATCAACTCAATTGCGCCATGTACGCAATGCTTGAGTCACACTCCGG CAGGCCAAGGAGACCGCACTGCGGAAAAGAATATCATGGTGCGTGCACGG ATTTTAATGTGGTCAGGGGCTTTCGAGAATTCGACGTCATCATTCATCAT GTGAGAGACTGATAGTTACCATACCAGGACGAAACTTTCAATCAAGTGAT TGTGCTGAATCGCGACACTGGTACGTGATCACGATTCCATCACGATGCAG TAACCGCGGTGGACAGCACCACTGGGCAAGCGGCGTGGAGAATGACGGTT CCGCCCGCACAAGCGTGAGGGCTGTCATTGGTTATTCGCTACTGAAGGGG TGTGGTGACGTTTCACCGTCTGTGGGTTGACGAGAGTACTTCGCGTGTGC TTGTGTTGGCCTCTTCTTCGCTATCGGTATTGCAACTGTTGGGCAATCAT GTAGCGTTCATTGATGGTCTACGCGTTGGATGCTTCATCGGTAAGTGGAG GGAGGTGTGGGGTGAGCGTCGTGGTGTGACGCACAAATTATGTGTTCGAG GCTGTGCTGACGGGAGATTTGCAGGGCGTGCAGCAGGGCGAACCCAAATC CCTCAGTCAGTCGGTGCCGCCCTCCGCCAGCAACACAGTGTCGCTCTCCA CGGGGTGGGGGTGTTGTTATCTGGGCAGGGCAGCAGCTATGTGTTTCAGG GTCGTCATCCAATTGGACAAGGAGAACCTCATGTGCTGGTCACTCAAAAA CGCCGGAGCGCCAACCACAACGACCACCCTCAAGGTTGGTTGTATTGAGG TGGCATATTCCACAGGCTTTGCTGACCAAGTTTGACGTGTACAATTTCAA CGCCGTGCAAGACGTTGGGGTGGCAGATCTTCAGTTGAAGTCGACATTCC TTCTCAATACCCCGCAATTTCGGTGCGCGACTCTGTGTCTAACAGGTTGC GGTTATAGGGCCACCGTATTCATTGCCGGCAATCTTCAGCTACAAGTAGT GGATGCGCCGGTCCGCGTGCCTCAGGTCCGGTTCCCGCACTTCCATCGCT TCCCAGGGCTCCACCATCGCCTCATGTGGTGCATGGGAACAAGACGAACA AGGCGGTGCGCCAGTTAGTAAACGAAAGGAGAAGGGCAAGCCCGCCGTGG CCGCAAGGTAGAGGTCGGTTTGCTCATGGCTGTAGTGATGAAACTGACGG CAAAGGTTTCGTTTGCTTCCAACCCCTGCTCCCCCTTCTCCAACCCCGCT CTGGAGTCGTAGTATAATTGCATTTGTTTAGAGCTGGATCAACCGATTAC CGATGCGTTCGTGATTCACATGCTGTTTGACAAGGTGGGTTAGTGGCGAC AACATGCTCTGGCAGTCAAAAGAGCAGCTGTCATTGGTCATCCATCATGC AGACCCATTTGGTGAGTAGTACAGGCTTTACCATCGACAGAGAAAGCAAG CTCATTGCCACCTTTGATTCCTCACGTTGACTTTGTCAACCATGGTGGCG TTGCACAGGTTAGGGTCTGCATTCTTATTAGTGGCAGATGTTTGCAAGCC CATTTACCAAAGCAACGGGGGGTGTGGCGTTTCGAACGCTGATCGTTGCT CAAGATATCTCTTTGTCCATGCTTCAGGTGCAGTGAGCCATTTTATGGTG AAAGGGCGATCAACTCATGTGGACACGTGACGAAGCTCTAGCTACCATCA AGCAGGTTGAGTTTGTGCAACTGCCAGCTGATTCGACGTTTGCCGCAACG CAAGGTTGGCACACATAGCGATTGAGTGCTATCAGAGTATCCCTCATTGC TGAATCGACTCGGACCACAGCTGCAAGACTTACTGGTCCGGTGGGGCATG TAACACTCAGCAGGCGTCGGCGAAATCTCTTCTCGCGTTCCGAGGCGTAT TCAGTGCGCGCAAAATGGACACCACCAGGCTGGTTGCAGATGACTTTGGG TTCCGGAAGTTGATCCTGGCTGTGACTGGTCGAATTCGTTTGGCGCCAAC CTGTTTCTAGAGGGTGGAAAAGTATATGCGCTAGATTCCCTTCAAGGAAA CATAGTCTGGGAGGCTATCTTCCGTGATCAGCAGGTTTGGGTGGATACCT CACCGGCTAGACTGGATCTGTGGAGGATATCTGGCGGCTGCAATGCTACA AAGGTAGAGTGCGCAAAAAGAAACGATCTTTCAGAGCATTCAGACTGTTT GGTCTTTTCTACAACTCTTTCCATTACACCCACAACAACAATTCGTCGTC TCAATGGTTTGACCGGCGCAGTGGACCTCTCGTCTACAGTTATTTTGCCC CACCAGGTTGGTTGTCGGTTCTCACACTGCAGTTGTTGGAGGCCATTCAA TTGCCGTACAGGGATACGCACCACCATGCACTTCACATGCTTGTTGATAC GCAGTTCAAAGTAGTGTGTTCTTCTAATAATCGTCAGGTGACTGTCTATC CAAACGATGACGAGGCAATGTCGCTGTTTGACAAGCACGTACACAACGTA TACTTCCATCTGGCATCGGTAGAAGTATTTTGGCCAGTGGTCTAGGTCTC GGACGGAAACGTGAAGGGCTACGCCGTGAAACGACAGGTGTTTAGCCGAC TGTAATCTTCAGGCGTCGGGTGAATATCGAGCCGTGTTGGTGTGGACCGT GGACTTCCCCAAGGAAATTGAATCGGTGACTCGGAACAGTTTCACTCGGA GTTGCAGATCGCCGCGGTGGCAGCCAAGCCCAACAATGAAGTGATACAAT CGTCCATGTAGGCGGTACCGTTATCAGTCTGGCCAGCCGCACAATCGGCG AAACGCTCATGTACAAGTACCTCAATCCACACCTTTTGACGGTGGCCACT GTCCGCACTCAACCTGTGGCTGGTATTGGTGGTACCTTGATCTCCATCAG GCATGCGGCTGCTGCCTGGCAAAAAAACCGCCACGGATCCGTCTGTGAAT GTGTACCTAATCGACACGGTTACAGGTCAGCTCTCTGTTGGTAATGTAGC AGGTTCAATTCTGGAACGAGTCATTCATCGCTACGGTGAAGGGCCTGTCC ACTTGGTGACAATGCACAGGAATAATTGTATGTAGTTGCAAAGTGAGAAT GTCGTTGTCTGCCACTTTTGGGACACCCAACAATACCGTAAGTGGGTTCC AATGATGATGGTAGAGTTCGAGATGTCAGTTTTGGAGCTCTTCGAAGAAC GCGACCCATCAGACAGGTCGTTTCACGCGATCGATTGCTGCAGTGGCGAC GTGTCGGAACTCACATCATTTTCGTTGCCTCCCCTTCACCTAATCCAGCA AACCTACGTATTCCGGTGGGGTTGGATTGCTCATATGTCAGGACTGGAAT CAAAGCGTTGTCTGTGTCTGAAACCCAAGCTGGAATTACATCCAAACATT TCCTAGGTGAGGTTCAGATTGCTATTGTGTTAGTCGGGATGGTATCCGAT CAAGTCTATGGGTTGAATCGTCGATTTGTCGATGCCAAAAGGCCCACCGA AGCGATTACTCAGACCGAACGAGAAGAAGGTTTGATCCCCTACATGCGAG AGCTGCCCGTGGATCCTCTCGAAATGCTCTCCTACAACAAGACGGTAAGC GGTAATGTTGAGCGACTCCAGGTCGCCGGTCTCCGGGGCATCGCGTCCTC GTCTGCATTTTTGGAGTCCACGTCATTGGTACCACTGTGGTAGCTCACCC TGTAGGTGTTCTCATATGGCGTGGACATGTTCTTCACTCGGGTTGCGCCT TCACAAACGTTTGACATGCTAAACGAAGGTGGCGTGGACATGTTTCATTT CCTAGACTTCAATTATCTGTTTCTGATCGGCACAGTCACACTTGTTTTAG TTGGTATTTTTGTCACTGGCCGGCTTTCAAAGGGCGCTGAGGTTCGTGCT GCTTGGAGGTGAACAGTAAATACGTTCATACCAGCC
back to top

Coding sequence (CDS) from alignment at H-fluviatilis_contig10079:2962..7097+

>mRNA_H-fluviatilis_contig10079.228.1 ID=mRNA_H-fluviatilis_contig10079.228.1|Name=mRNA_H-fluviatilis_contig10079.228.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=5052bp|location=Sequence derived from alignment at H-fluviatilis_contig10079:2962..7097+ (Heribaudiella fluviatilis SAG_13_90)
ATGACGGTTCCGCCCGCACAAGCATGACGGTTCCGCCCGCACAAGCGGGT
GTGGTGACGTTTCACCGTCTGTGGGTTGACGAGAGTACTTCGCGTGTGCT
TGTGTTGGCCTCTTCTTCGCTATCGGGGTGTGGTGACGTTTCACCGTCTG
TGGGTTGACGAGAGTACTTCGCGTGTGCTTGTGTTGGCCTCTTCTTCGCT
ATCGCGTTCATTGATGGTCTACGCGTTGGATGCTTCATCGCGTTCATTGA
TGGTCTACGCGTTGGATGCTTCATCGGGCGTGCAGCAGGGCGAACCCAAA
TCCCTCAGTCAGTCGGTGCCGCCCTCCGCCAGCAACACAGTGTCGCTCTC
CACGGGGGCGTGCAGCAGGGCGAACCCAAATCCCTCAGTCAGTCGGTGCC
GCCCTCCGCCAGCAACACAGTGTCGCTCTCCACGGGGGTCGTCATCCAAT
TGGACAAGGAGAACCTCATGTGCTGGTCACTCAAAAACGCCGGAGCGCCA
ACCACAACGACCACCCTCAAGGGTCGTCATCCAATTGGACAAGGAGAACC
TCATGTGCTGGTCACTCAAAAACGCCGGAGCGCCAACCACAACGACCACC
CTCAAGGCTTTGCTGACCAAGTTTGACGTGTACAATTTCAACGCCGTGCA
AGACGTTGGGGTGGCAGATCTTCAGTTGAAGTCGACATTCCTTCTCAATA
CCCCGCAATTTCGGCTTTGCTGACCAAGTTTGACGTGTACAATTTCAACG
CCGTGCAAGACGTTGGGGTGGCAGATCTTCAGTTGAAGTCGACATTCCTT
CTCAATACCCCGCAATTTCGGGCCACCGTATTCATTGCCGGCAATCTTCA
GCTACAAGTAGTGGATGCGCCGGTCCGCGTGCCTCAGGGCCACCGTATTC
ATTGCCGGCAATCTTCAGCTACAAGTAGTGGATGCGCCGGTCCGCGTGCC
TCAGGGCTCCACCATCGCCTCATGTGGTGCATGGGAACAAGACGAACAAG
GCGGTGCGCCAGTTAGTAAACGAAAGGAGAAGGGCAAGCCCGCCGTGGCC
GCAAGGGCTCCACCATCGCCTCATGTGGTGCATGGGAACAAGACGAACAA
GGCGGTGCGCCAGTTAGTAAACGAAAGGAGAAGGGCAAGCCCGCCGTGGC
CGCAAGTGATGAAACTGACGGCAAAGTGATGAAACTGACGGCAAAGAGCT
GGATCAACCGATTACCGATGCGTTCGTGATTCACATGCTGTTTGACAAGA
GCTGGATCAACCGATTACCGATGCGTTCGTGATTCACATGCTGTTTGACA
AGTCAAAAGAGCAGCTGTCATTGGTCATCCATCATGCAGACCCATTTGTC
AAAAGAGCAGCTGTCATTGGTCATCCATCATGCAGACCCATTTGAGAAAG
CAAGCTCATTGCCACCTTTGATTCCTCACGTTGACTTTGTCAACCATGGT
GGCGTTGCACAGAGAAAGCAAGCTCATTGCCACCTTTGATTCCTCACGTT
GACTTTGTCAACCATGGTGGCGTTGCACAGATGTTTGCAAGCCCATTTAC
CAAAGCAACGGGGGGTGTGGCGTTTCGAACGCTGATCGTTGCTCAAGATA
TCTCTTTGTCCATGCTTCAGATGTTTGCAAGCCCATTTACCAAAGCAACG
GGGGGTGTGGCGTTTCGAACGCTGATCGTTGCTCAAGATATCTCTTTGTC
CATGCTTCAGGGCGATCAACTCATGTGGACACGTGACGAAGCTCTAGCTA
CCATCAAGCAGGTTGAGTTTGTGCAACTGCCAGCTGATTCGACGTTTGCC
GCAACGCAAGGGCGATCAACTCATGTGGACACGTGACGAAGCTCTAGCTA
CCATCAAGCAGGTTGAGTTTGTGCAACTGCCAGCTGATTCGACGTTTGCC
GCAACGCAAGAGTATCCCTCATTGCTGAATCGACTCGGACCACAGCTGCA
AGACTTACTGAGTATCCCTCATTGCTGAATCGACTCGGACCACAGCTGCA
AGACTTACTGGCGTCGGCGAAATCTCTTCTCGCGTTCCGAGGCGTATTCA
GTGCGCGCAAAATGGACACCACCAGGCTGGTTGCAGATGACTTTGGGTTC
CGGAAGTTGATCCTGGCTGTGACTGGCGTCGGCGAAATCTCTTCTCGCGT
TCCGAGGCGTATTCAGTGCGCGCAAAATGGACACCACCAGGCTGGTTGCA
GATGACTTTGGGTTCCGGAAGTTGATCCTGGCTGTGACTGAGGGTGGAAA
AGTATATGCGCTAGATTCCCTTCAAGGAAACATAGTCTGGGAGGCTATCT
TCCGTGATCAGCAGAGGGTGGAAAAGTATATGCGCTAGATTCCCTTCAAG
GAAACATAGTCTGGGAGGCTATCTTCCGTGATCAGCAGACTGGATCTGTG
GAGGATATCTGGCGGCTGCAATGCTACAAAGACTGGATCTGTGGAGGATA
TCTGGCGGCTGCAATGCTACAAAGAGCATTCAGACTGTTTGGTCTTTTCT
ACAACTCTTTCCATTACACCCACAACAACAATTCGTCGTCTCAATGGTTT
GACCGGCGCAGTGGACCTCTCGTCTACAGTTATTTTGCCCCACCAGAGCA
TTCAGACTGTTTGGTCTTTTCTACAACTCTTTCCATTACACCCACAACAA
CAATTCGTCGTCTCAATGGTTTGACCGGCGCAGTGGACCTCTCGTCTACA
GTTATTTTGCCCCACCAGTTGTTGGAGGCCATTCAATTGCCGTACAGGGA
TACGCACCACCATGCACTTCACATGCTTGTTGATACGCAGTTCAAATTGT
TGGAGGCCATTCAATTGCCGTACAGGGATACGCACCACCATGCACTTCAC
ATGCTTGTTGATACGCAGTTCAAAGTGACTGTCTATCCAAACGATGACGA
GGCAATGTCGCTGTTTGACAAGCACGTACACAACGTATACTTCCATCTGG
CATCGGTGACTGTCTATCCAAACGATGACGAGGCAATGTCGCTGTTTGAC
AAGCACGTACACAACGTATACTTCCATCTGGCATCGGTCTCGGACGGAAA
CGTGAAGGGCTACGCCGTGAAACGACAGGTCTCGGACGGAAACGTGAAGG
GCTACGCCGTGAAACGACAGGCGTCGGGTGAATATCGAGCCGTGTTGGTG
TGGACCGTGGACTTCCCCAAGGAAATTGAATCGGCGTCGGGTGAATATCG
AGCCGTGTTGGTGTGGACCGTGGACTTCCCCAAGGAAATTGAATCGATCG
CCGCGGTGGCAGCCAAGCCCAACAATGAAGTGATACAATCGTCCATATCG
CCGCGGTGGCAGCCAAGCCCAACAATGAAGTGATACAATCGTCCATCCGC
ACAATCGGCGAAACGCTCATGTACAAGTACCTCAATCCACACCTTTTGAC
GGTGGCCACTGTCCGCACTCAACCTGTGGCTGCCGCACAATCGGCGAAAC
GCTCATGTACAAGTACCTCAATCCACACCTTTTGACGGTGGCCACTGTCC
GCACTCAACCTGTGGCTGGCATGCGGCTGCTGCCTGGCAAAAAAACCGCC
ACGGATCCGTCTGTGAATGTGTACCTAATCGACACGGTTACAGGCATGCG
GCTGCTGCCTGGCAAAAAAACCGCCACGGATCCGTCTGTGAATGTGTACC
TAATCGACACGGTTACAGGTTCAATTCTGGAACGAGTCATTCATCGCTAC
GGTGAAGGGCCTGTCCACTTGGTTCAATTCTGGAACGAGTCATTCATCGC
TACGGTGAAGGGCCTGTCCACTTGTTGCAAAGTGAGAATGTCGTTGTCTG
CCACTTTTGGGACACCCAACAATACCTTGCAAAGTGAGAATGTCGTTGTC
TGCCACTTTTGGGACACCCAACAATACCAGTTCGAGATGTCAGTTTTGGA
GCTCTTCGAAGAACGCGACCCATCAGACAGAGTTCGAGATGTCAGTTTTG
GAGCTCTTCGAAGAACGCGACCCATCAGACAGTGGCGACGTGTCGGAACT
CACATCATTTTCGTTGCCTCCCCTTCACCTAATCCAGCAAACCTACGTAT
TCCGTGGCGACGTGTCGGAACTCACATCATTTTCGTTGCCTCCCCTTCAC
CTAATCCAGCAAACCTACGTATTCCGGACTGGAATCAAAGCGTTGTCTGT
GTCTGAAACCCAAGCTGGAATTACATCCAAACATTTCCTAGGACTGGAAT
CAAAGCGTTGTCTGTGTCTGAAACCCAAGCTGGAATTACATCCAAACATT
TCCTAGTCGGGATGGTATCCGATCAAGTCTATGGGTTGAATCGTCGATTT
GTCGATGCCAAAAGGCCCACCGAAGCGATTACTCAGACCGAACGAGAAGA
AGGTTTGATCCCCTACATGCGAGAGCTGCCCGTGGATCCTCTCGAAATGC
TCTCCTACAACAAGACGTCGGGATGGTATCCGATCAAGTCTATGGGTTGA
ATCGTCGATTTGTCGATGCCAAAAGGCCCACCGAAGCGATTACTCAGACC
GAACGAGAAGAAGGTTTGATCCCCTACATGCGAGAGCTGCCCGTGGATCC
TCTCGAAATGCTCTCCTACAACAAGACGGTCGCCGGTCTCCGGGGCATCG
CGTCCTCGTCTGCATTTTTGGAGTCCACGTCATTGGTCGCCGGTCTCCGG
GGCATCGCGTCCTCGTCTGCATTTTTGGAGTCCACGTCATTGGTGTTCTC
ATATGGCGTGGACATGTTCTTCACTCGGGTTGCGCCTTCACAAACGTTTG
ACATGCTAAACGAAGGTGTTCTCATATGGCGTGGACATGTTCTTCACTCG
GGTTGCGCCTTCACAAACGTTTGACATGCTAAACGAAGACTTCAATTATC
TGTTTCTGATCGGCACAGTCACACTTGTTTTAGTTGGTATTTTTGTCACT
GGCCGGCTTTCAAAGGGCGCTGAGGTTCGTGCTGCTTGGAGGTGAACTTC
AATTATCTGTTTCTGATCGGCACAGTCACACTTGTTTTAGTTGGTATTTT
TGTCACTGGCCGGCTTTCAAAGGGCGCTGAGGTTCGTGCTGCTTGGAGGT
GA
back to top