mRNA_H-fluviatilis_contig100786.223.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100786.223.1
Unique NamemRNA_H-fluviatilis_contig100786.223.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A835XL84_9CHLO (MYND-type domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XL84_9CHLO)

HSP 1 Score: 61.6 bits (148), Expect = 8.990e-9
Identity = 25/43 (58.14%), Postives = 30/43 (69.77%), Query Frame = 3 
Query:   21 ACGACTTSLAAQGTRKRCAQCKTVYYCNVQCQRKHWITHKLEC 149
            ACG C+  L A G  +RC QCK+VYYC+V CQ+KHW  HK  C
Sbjct:  121 ACGCCSQPLKAGGLPQRCGQCKSVYYCSVACQKKHWPEHKTAC 163
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A8J4GAJ8_9CHLO (MYND-type domain-containing protein n=1 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4GAJ8_9CHLO)

HSP 1 Score: 60.8 bits (146), Expect = 1.680e-8
Identity = 24/43 (55.81%), Postives = 31/43 (72.09%), Query Frame = 3 
Query:   21 ACGACTTSLAAQGTRKRCAQCKTVYYCNVQCQRKHWITHKLEC 149
            AC  C+  L + G  +RC+QCK+VYYC+V CQ+KHW  HKL C
Sbjct:  152 ACACCSQPLKSGGLPQRCSQCKSVYYCSVACQKKHWPEHKLNC 194
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: UPI00077B04D0 (egl nine homolog 3-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077B04D0)

HSP 1 Score: 57.4 bits (137), Expect = 2.610e-7
Identity = 23/45 (51.11%), Postives = 33/45 (73.33%), Query Frame = 3 
Query:   15 IAACGACTTSLAAQGTRKRCAQCKTVYYCNVQCQRKHWITHKLEC 149
            +A+C  CT+     G+ ++C++CKTVYYCN +CQ+ HW THKL C
Sbjct:   41 MASCALCTSR---NGSLRKCSRCKTVYYCNRECQKLHWKTHKLTC 82
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A8J4F0E2_9CHLO (MYND-type domain-containing protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4F0E2_9CHLO)

HSP 1 Score: 57.4 bits (137), Expect = 2.760e-7
Identity = 23/46 (50.00%), Postives = 31/46 (67.39%), Query Frame = 3 
Query:   21 ACGACTTSLAAQGTRKRCAQCKTVYYCNVQCQRKHWITHKLECKYA 158
            AC  C+  L + G  +RC+QCK+VYYC+V CQ++HW  HK  C  A
Sbjct:  151 ACACCSQPLKSGGLPQRCSQCKSVYYCSVACQKRHWPEHKPNCTKA 196
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A3P6SWR9_LITSI (MYND-type domain-containing protein n=1 Tax=Litomosoides sigmodontis TaxID=42156 RepID=A0A3P6SWR9_LITSI)

HSP 1 Score: 56.6 bits (135), Expect = 4.950e-7
Identity = 20/34 (58.82%), Postives = 27/34 (79.41%), Query Frame = 3 
Query:   54 QGTRKRCAQCKTVYYCNVQCQRKHWITHKLECKY 155
            +G   RCA+CK  +YCN++CQ+K WITHK+EC Y
Sbjct:   49 EGKLNRCARCKFAHYCNMKCQKKDWITHKIECSY 82
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A166NSG2_9AGAM (MYND-type domain-containing protein n=1 Tax=Fibularhizoctonia sp. CBS 109695 TaxID=436010 RepID=A0A166NSG2_9AGAM)

HSP 1 Score: 53.1 bits (126), Expect = 1.630e-6
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 3 
Query:   51 AQGTR-KRCAQCKTVYYCNVQCQRKHWITHKLECKYAE 161
            A G+R +RC QCK VYYCN +CQ++HW  HK +C+ A+
Sbjct:   67 AGGSRVQRCVQCKQVYYCNQECQKRHWPIHKKDCRIAQ 104
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A4W4E761_ELEEL (Ankyrin repeat and MYND domain containing 2 n=6 Tax=Electrophorus electricus TaxID=8005 RepID=A0A4W4E761_ELEEL)

HSP 1 Score: 55.1 bits (131), Expect = 1.700e-6
Identity = 24/40 (60.00%), Postives = 27/40 (67.50%), Query Frame = 3 
Query:   33 CTTSLAAQGTRKRCAQCKTVYYCNVQCQRKHWITHKLECK 152
            CTT    +G  KRC+ CKTV YCN +CQR HW THK  CK
Sbjct:  320 CTTC-GEKGAEKRCSICKTVIYCNQECQRLHWFTHKKVCK 358
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A182EM53_ONCOC (MYND-type domain-containing protein n=1 Tax=Onchocerca ochengi TaxID=42157 RepID=A0A182EM53_ONCOC)

HSP 1 Score: 53.5 bits (127), Expect = 3.040e-6
Identity = 18/34 (52.94%), Postives = 26/34 (76.47%), Query Frame = 3 
Query:   54 QGTRKRCAQCKTVYYCNVQCQRKHWITHKLECKY 155
            +G   RCA+CK  +YCN++CQ+K W+ HK+EC Y
Sbjct:   40 EGKLSRCARCKFTHYCNLKCQKKDWLIHKIECSY 73
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BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A8J2Q2U7_9BILA (Hypothetical protein n=1 Tax=Cercopithifilaria johnstoni TaxID=2874296 RepID=A0A8J2Q2U7_9BILA)

HSP 1 Score: 53.9 bits (128), Expect = 4.340e-6
Identity = 18/34 (52.94%), Postives = 25/34 (73.53%), Query Frame = 3 
Query:   54 QGTRKRCAQCKTVYYCNVQCQRKHWITHKLECKY 155
            +G   RCA CK  +YCN++CQ+K W+ HK+EC Y
Sbjct:   40 EGKLSRCAHCKFTHYCNIKCQKKDWLIHKIECSY 73
[Close]
BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Match: A0A5C2SQ22_9APHY (SET domain-containing protein n=2 Tax=Lentinus tigrinus TaxID=5365 RepID=A0A5C2SQ22_9APHY)

HSP 1 Score: 53.9 bits (128), Expect = 4.420e-6
Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 3 
Query:   24 CGACTTSLAAQGTRKRCAQCKTVYYCNVQCQRKHWITHKLEC 149
            C AC     A G  KRC +CKTV+YCN +CQ + W  HK EC
Sbjct:   19 CSACAGPAPAGGGLKRCPKCKTVFYCNSECQNRDWAWHKREC 60
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100786.223.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835XL84_9CHLO8.990e-958.14MYND-type domain-containing protein n=1 Tax=Edapho... [more]
A0A8J4GAJ8_9CHLO1.680e-855.81MYND-type domain-containing protein n=1 Tax=Volvox... [more]
UPI00077B04D02.610e-751.11egl nine homolog 3-like n=2 Tax=Acropora TaxID=612... [more]
A0A8J4F0E2_9CHLO2.760e-750.00MYND-type domain-containing protein n=1 Tax=Volvox... [more]
A0A3P6SWR9_LITSI4.950e-758.82MYND-type domain-containing protein n=1 Tax=Litomo... [more]
A0A166NSG2_9AGAM1.630e-655.26MYND-type domain-containing protein n=1 Tax=Fibula... [more]
A0A4W4E761_ELEEL1.700e-660.00Ankyrin repeat and MYND domain containing 2 n=6 Ta... [more]
A0A182EM53_ONCOC3.040e-652.94MYND-type domain-containing protein n=1 Tax=Onchoc... [more]
A0A8J2Q2U7_9BILA4.340e-652.94Hypothetical protein n=1 Tax=Cercopithifilaria joh... [more]
A0A5C2SQ22_9APHY4.420e-652.38SET domain-containing protein n=2 Tax=Lentinus tig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100786contigH-fluviatilis_contig100786:169..598 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons4
Model size336
Cds size333
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100786.223.1prot_H-fluviatilis_contig100786.223.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100786 169..596 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929021.1078928-CDS-H-fluviatilis_contig100786:168..2571622929021.1078928-CDS-H-fluviatilis_contig100786:168..257Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 169..257 +
1691135152.6759799-CDS-H-fluviatilis_contig100786:168..2571691135152.6759799-CDS-H-fluviatilis_contig100786:168..257Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 169..257 +
1622929021.1267045-CDS-H-fluviatilis_contig100786:288..3331622929021.1267045-CDS-H-fluviatilis_contig100786:288..333Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 289..333 +
1691135152.6925375-CDS-H-fluviatilis_contig100786:288..3331691135152.6925375-CDS-H-fluviatilis_contig100786:288..333Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 289..333 +
1622929021.1495166-CDS-H-fluviatilis_contig100786:366..4961622929021.1495166-CDS-H-fluviatilis_contig100786:366..496Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 367..496 +
1691135152.7045784-CDS-H-fluviatilis_contig100786:366..4961691135152.7045784-CDS-H-fluviatilis_contig100786:366..496Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 367..496 +
1622929021.171738-CDS-H-fluviatilis_contig100786:527..5961622929021.171738-CDS-H-fluviatilis_contig100786:527..596Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 528..596 +
1691135152.717087-CDS-H-fluviatilis_contig100786:527..5961691135152.717087-CDS-H-fluviatilis_contig100786:527..596Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100786 528..596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100786.223.1

>prot_H-fluviatilis_contig100786.223.1 ID=prot_H-fluviatilis_contig100786.223.1|Name=mRNA_H-fluviatilis_contig100786.223.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=111bp
RSCLRLQPVGLARLPWLRRVLASDVRSARRCIIAMFSVRGSIGSRTSLSA
SMQNLMANRPCLRDQTCLVRLSRRPSNLIAMSIQKYSPGESQRQCDNLNM
GGTDSHHFCSK
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mRNA from alignment at H-fluviatilis_contig100786:169..598+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100786.223.1 ID=mRNA_H-fluviatilis_contig100786.223.1|Name=mRNA_H-fluviatilis_contig100786.223.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=430bp|location=Sequence derived from alignment at H-fluviatilis_contig100786:169..598+ (Heribaudiella fluviatilis SAG_13_90)
CGCTCATGTCTGCGATTGCAGCCTGTGGGGCTTGCACGACTTCCCTGGCT
GCGCAGGGTACTCGCAAGCGATGTGCGCAGTGCAAGACGGTGAGATGATT
GAAGGGAAATCTTGTCCTAGGTGTATTATTGCAATGTTCAGTGTCAGAGG
AAGCATTGGATCACGGTAAAGTGACTCAGCATCATGGCACCATCACAGCA
CAAGCTTGAGTGCAAGTATGCAGAACCTGATGGCAAACCGACCATGCCTG
CGAGATCAGACTTGCCTAGTTCGCCTCTCCCGTCGTCCGTCAAATCTGAT
CGCGATGTCCATCCAGAAATACAGCCCCGTCAGTTGTGCTATGTGTGATT
GTGTGTTAGGGCGAATCCCAAAGGCAATGCGACAATTTAAATATGGGTGG
GACTGATTCACACCATTTCTGTAGCAAGAG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100786:169..598+

>mRNA_H-fluviatilis_contig100786.223.1 ID=mRNA_H-fluviatilis_contig100786.223.1|Name=mRNA_H-fluviatilis_contig100786.223.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=666bp|location=Sequence derived from alignment at H-fluviatilis_contig100786:169..598+ (Heribaudiella fluviatilis SAG_13_90)
CGCTCATGTCTGCGATTGCAGCCTGTGGGGCTTGCACGACTTCCCTGGCT
GCGCAGGGTACTCGCAAGCGATGTGCGCAGTGCAAGACGCGCTCATGTCT
GCGATTGCAGCCTGTGGGGCTTGCACGACTTCCCTGGCTGCGCAGGGTAC
TCGCAAGCGATGTGCGCAGTGCAAGACGGTGTATTATTGCAATGTTCAGT
GTCAGAGGAAGCATTGGATCACGGTGTATTATTGCAATGTTCAGTGTCAG
AGGAAGCATTGGATCACGCACAAGCTTGAGTGCAAGTATGCAGAACCTGA
TGGCAAACCGACCATGCCTGCGAGATCAGACTTGCCTAGTTCGCCTCTCC
CGTCGTCCGTCAAATCTGATCGCGATGTCCATCCAGAAATACAGCCCCCA
CAAGCTTGAGTGCAAGTATGCAGAACCTGATGGCAAACCGACCATGCCTG
CGAGATCAGACTTGCCTAGTTCGCCTCTCCCGTCGTCCGTCAAATCTGAT
CGCGATGTCCATCCAGAAATACAGCCCCGGCGAATCCCAAAGGCAATGCG
ACAATTTAAATATGGGTGGGACTGATTCACACCATTTCTGTAGCAAGGGC
GAATCCCAAAGGCAATGCGACAATTTAAATATGGGTGGGACTGATTCACA
CCATTTCTGTAGCAAG
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