mRNA_H-fluviatilis_contig100664.201.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100664.201.1
Unique NamemRNA_H-fluviatilis_contig100664.201.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A835ZIS5_9STRA (N2227-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIS5_9STRA)

HSP 1 Score: 77.0 bits (188), Expect = 1.720e-14
Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 1
Query:    1 QYVATIRRTMRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFRLEAVERLPPCSYRVTADSARSLRVDEFKPVFWVAVL 249
            +YVA +   +R GGVW+N GPLH+H++S +  S DE+ A++  +GF +    +LPPC YR       S   ++F+P+ W A L
Sbjct:  443 EYVAALTHALRRGGVWVNLGPLHFHRESRVVASADELTAVLREAGFEVLRAAQLPPCEYR--RGEPDSTATEQFRPLLWAARL 523          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A0D6EI36_SPOSA (SPOSA6832_01221-mRNA-1:cds (Fragment) n=1 Tax=Sporidiobolus salmonicolor TaxID=5005 RepID=A0A0D6EI36_SPOSA)

HSP 1 Score: 62.4 bits (150), Expect = 2.190e-9
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 1
Query:    1 QYVATIRRTMRPGGVWINCGPLHWHKQ-----SALALSLDEMLALVVGSGFRLEAVERLPPCSYRVTADSARSLRVDEFKPVFWVA-VLEGT 258
            QY+ TI   ++PGG+WINCGP  WH +     S++ L+LD++ AL    GF L   ER    SY     + RSL   E+   FWVA  +EGT
Sbjct:  269 QYLETIWGLLKPGGMWINCGPTLWHFENDHDASSIELTLDDVKALARRIGFELSE-EREITTSYTT---NPRSLLKHEYTAAFWVARKVEGT 356          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A0F7SLH3_PHARH (Putative trehalase n=1 Tax=Phaffia rhodozyma TaxID=264483 RepID=A0A0F7SLH3_PHARH)

HSP 1 Score: 59.7 bits (143), Expect = 2.110e-8
Identity = 34/88 (38.64%), Postives = 50/88 (56.82%), Query Frame = 1
Query:    1 QYVATIRRTMRPGGVWINCGPLHWH------KQSALALSLDEMLALVVGSGFRLEAVERLPPCSYRVTADSARSLRVDEFKPVFWVAV 246
            +Y+ TI R ++PGG+WIN GPL WH      K  ++ LSLDE+ ALV   GF ++  E   P  Y  T +S   L+  +++   W A+
Sbjct:  378 EYLETIYRVLKPGGIWINLGPLLWHWENNSSKDVSVELSLDEVKALVAEVGFEIKE-ESTVPSGY--TGNSEGMLKY-QYEAACWTAI 461          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A6G1GGP4_9PEZI (N2227-domain-containing protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1GGP4_9PEZI)

HSP 1 Score: 59.7 bits (143), Expect = 2.120e-8
Identity = 37/92 (40.22%), Postives = 50/92 (54.35%), Query Frame = 1
Query:    4 YVATIRRTMRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFRLEAVERLPPCSY------RVTADSA------RSLRVDEFKPVFWVA 243
            Y+ TI RT+RPGG WIN GPL +     + LSLDE++ L    GF  E +E  P C        +V + SA      R+L ++ +K  FWVA
Sbjct:  396 YLETIHRTLRPGGYWINSGPLLYGSGPFVQLSLDEIILLSEALGF--EFIETSPRCGEVTLSGKKVRSMSAIYGSNERALNINGYKVQFWVA 485          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A7S4NY15_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Paramoeba aestuarina TaxID=180227 RepID=A0A7S4NY15_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 3.680e-8
Identity = 33/94 (35.11%), Postives = 52/94 (55.32%), Query Frame = 1
Query:    4 YVATIRRTMRPGGVWINCGPLHWHKQS-----ALALSLDEMLALVVGSGFRLEAVERLPPCSYRVTADSARSLRVDEFKPVFWVAVLEGTYTGN 270
            Y+ TI   ++PGG+WIN GPL +H +      +L L+ DE++ +V G+GF++E +E    C Y  T +S   +R    +   +V V EG   G 
Sbjct:  252 YINTIHLILKPGGIWINLGPLLYHYEENPNEISLELTFDEIMEVVKGAGFKVEKLEE-KSCYY--TGNSKSMMRTVYSRCQLFVCVKEGENRGK 342          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: K0SW67_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SW67_THAOC)

HSP 1 Score: 58.9 bits (141), Expect = 3.940e-8
Identity = 30/83 (36.14%), Postives = 47/83 (56.63%), Query Frame = 1
Query:    1 QYVATIRRTMRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFRL---EAVERLPPCSYRVTADSARSLRVDEFKPVFWV 240
            +Y+ TI+  +RP G+WIN GP+ WH+ + L LS DE+  LV  +GF +   E  E L P  +    D     R + ++P+ +V
Sbjct:  355 EYLLTIKHAIRPKGLWINLGPVQWHRNAQLGLSADELKDLVRMAGFDIVVWEVSEELVPYRH---PDDVTGTRAEFYRPLRFV 434          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A0D2FBS7_9EURO (Uncharacterized protein n=1 Tax=Rhinocladiella mackenziei CBS 650.93 TaxID=1442369 RepID=A0A0D2FBS7_9EURO)

HSP 1 Score: 58.2 bits (139), Expect = 7.340e-8
Identity = 34/90 (37.78%), Postives = 47/90 (52.22%), Query Frame = 1
Query:    4 YVATIRRTMRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFRL---------EAVERLPPCSYRVTAD-SARSLRVDEFKPVFWVA 243
            YV TIRR ++PGGVWIN GPL W   + L LSL+E++ +    GF           + +  LP  S       + R+L  + +K  FWVA
Sbjct:  365 YVNTIRRVLKPGGVWINFGPLLWSYNTQLKLSLEEIVTISEAVGFDFLETNDSFGPKTLGHLPVRSIHAPYGFNQRALTENAYKAQFWVA 454          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A2J5HIG2_9EURO (Methyltransferase-like protein n=1 Tax=Aspergillus taichungensis TaxID=482145 RepID=A0A2J5HIG2_9EURO)

HSP 1 Score: 57.8 bits (138), Expect = 9.930e-8
Identity = 32/84 (38.10%), Postives = 45/84 (53.57%), Query Frame = 1
Query:    4 YVATIRRTMRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFRLEAVERLPPCSYRVTADSARSLRVDEFKPVFWVAVLEG 255
            +++ I R ++PGGVWIN GPL W   SAL LS +E+L L V  GF ++   R    S  + A+   +L    +   FW A   G
Sbjct:  341 FLSNIHRLLKPGGVWINLGPLKWGSYSALHLSAEEVLQLAVLLGFDVDHTSRKSIDS--LYAEQPETLLKFTYVTQFWSATKRG 422          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: A0A438MXI2_EXOME (Uncharacterized protein n=1 Tax=Exophiala mesophila TaxID=212818 RepID=A0A438MXI2_EXOME)

HSP 1 Score: 57.4 bits (137), Expect = 1.030e-7
Identity = 34/91 (37.36%), Postives = 47/91 (51.65%), Query Frame = 1
Query:    4 YVATIRRTMRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFR-LEAV-----ERLPPCSYRVT----ADSARSLRVDEFKPVFWVAV 246
            Y+  I R +RPGG W+N GPL W   + L LSLDE++ L    GF  LE       E +P    R        ++R+L  + +K  FWVA+
Sbjct:  178 YMENIHRLLRPGGAWVNLGPLLWSYNAELQLSLDEVVRLAEAMGFDFLETSPGFGPETIPGLKVRSIHAPYGYNSRALSENAYKAQFWVAI 268          
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Match: E4Y985_OIKDI (Carnosine N-methyltransferase n=1 Tax=Oikopleura dioica TaxID=34765 RepID=E4Y985_OIKDI)

HSP 1 Score: 57.0 bits (136), Expect = 1.770e-7
Identity = 32/85 (37.65%), Postives = 51/85 (60.00%), Query Frame = 1
Query:    1 QYVATIRRTMRPGGVWINCGPLHWH----KQSALALSLDEMLALVVGSGFRLEAVERLPPCSYRVTADSARSLRVDEFKPVFWVA 243
            +YV  I R ++PGG+WIN GPL +H     + +L LS +E+ ++++ +GF LE +E    CSY    ++  SL   EFK + + A
Sbjct:  260 EYVEKIFRILKPGGLWINNGPLMYHFANTSEMSLELSWNELRSVILLTGFELE-LEDSEKCSY---VENPASLLTQEFKTILFTA 340          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100664.201.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZIS5_9STRA1.720e-1439.76N2227-like protein-domain-containing protein n=1 T... [more]
A0A0D6EI36_SPOSA2.190e-942.39SPOSA6832_01221-mRNA-1:cds (Fragment) n=1 Tax=Spor... [more]
A0A0F7SLH3_PHARH2.110e-838.64Putative trehalase n=1 Tax=Phaffia rhodozyma TaxID... [more]
A0A6G1GGP4_9PEZI2.120e-840.22N2227-domain-containing protein n=1 Tax=Eremomyces... [more]
A0A7S4NY15_9EUKA3.680e-835.11Hypothetical protein (Fragment) n=1 Tax=Paramoeba ... [more]
K0SW67_THAOC3.940e-836.14Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A0D2FBS7_9EURO7.340e-837.78Uncharacterized protein n=1 Tax=Rhinocladiella mac... [more]
A0A2J5HIG2_9EURO9.930e-838.10Methyltransferase-like protein n=1 Tax=Aspergillus... [more]
A0A438MXI2_EXOME1.030e-737.36Uncharacterized protein n=1 Tax=Exophiala mesophil... [more]
E4Y985_OIKDI1.770e-737.65Carnosine N-methyltransferase n=1 Tax=Oikopleura d... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100664contigH-fluviatilis_contig100664:532..804 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size273
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.3172293-CDS-H-fluviatilis_contig100664:531..7771622929018.3172293-CDS-H-fluviatilis_contig100664:531..777Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100664 532..777 -
1691135151.7830124-CDS-H-fluviatilis_contig100664:531..7771691135151.7830124-CDS-H-fluviatilis_contig100664:531..777Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100664 532..777 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929018.3300583-UTR-H-fluviatilis_contig100664:777..8041622929018.3300583-UTR-H-fluviatilis_contig100664:777..804Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100664 778..804 -
1691135151.7914677-UTR-H-fluviatilis_contig100664:777..8041691135151.7914677-UTR-H-fluviatilis_contig100664:777..804Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig100664 778..804 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100664.201.1prot_H-fluviatilis_contig100664.201.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100664 532..777 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100664.201.1

>prot_H-fluviatilis_contig100664.201.1 ID=prot_H-fluviatilis_contig100664.201.1|Name=mRNA_H-fluviatilis_contig100664.201.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=82bp
MRPGGVWINCGPLHWHKQSALALSLDEMLALVVGSGFRLEAVERLPPCSY
RVTADSARSLRVDEFKPVFWVAVLEGTYTGN*
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mRNA from alignment at H-fluviatilis_contig100664:532..804-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100664.201.1 ID=mRNA_H-fluviatilis_contig100664.201.1|Name=mRNA_H-fluviatilis_contig100664.201.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=273bp|location=Sequence derived from alignment at H-fluviatilis_contig100664:532..804- (Heribaudiella fluviatilis SAG_13_90)
CAGTACGTCGCGACGATTCGTCGAACCATGAGACCGGGAGGGGTGTGGAT CAACTGTGGCCCGCTTCACTGGCATAAGCAGTCGGCGTTGGCGCTGAGCC TAGACGAAATGCTGGCCCTCGTGGTAGGGTCCGGGTTTCGGTTGGAAGCG GTGGAGAGATTGCCCCCGTGCAGCTACAGGGTGACGGCCGACAGCGCGCG CTCCCTAAGGGTAGACGAGTTCAAGCCAGTGTTTTGGGTAGCAGTTTTGG AAGGGACGTATACCGGGAATTGA
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100664:532..804-

>mRNA_H-fluviatilis_contig100664.201.1 ID=mRNA_H-fluviatilis_contig100664.201.1|Name=mRNA_H-fluviatilis_contig100664.201.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=492bp|location=Sequence derived from alignment at H-fluviatilis_contig100664:532..804- (Heribaudiella fluviatilis SAG_13_90)
ATGAGACCGGGAGGGGTGTGGATCAACTGTGGCCCGCTTCACTGGCATAA
GCAGTCGGCGTTGGCGCTGAGCCTAGACGAAATGCTGGCCCTCGTGGTAG
GGTCCGGGTTTCGGTTGGAAGCGGTGGAGAGATTGCCCCCGTGCAGCTAC
AGGGTGACGGCCGACAGCGCGCGCTCCCTAAGGGTAGACGAGTTCAAGCC
AGTGTTTTGGGTAGCAGTTTTGGAAGGGACGTATACCGGGAATTGAATGA
GACCGGGAGGGGTGTGGATCAACTGTGGCCCGCTTCACTGGCATAAGCAG
TCGGCGTTGGCGCTGAGCCTAGACGAAATGCTGGCCCTCGTGGTAGGGTC
CGGGTTTCGGTTGGAAGCGGTGGAGAGATTGCCCCCGTGCAGCTACAGGG
TGACGGCCGACAGCGCGCGCTCCCTAAGGGTAGACGAGTTCAAGCCAGTG
TTTTGGGTAGCAGTTTTGGAAGGGACGTATACCGGGAATTGA
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