mRNA_H-fluviatilis_contig10062.193.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
|
Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A6H5KJB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJB0_9PHAE) HSP 1 Score: 331 bits (849), Expect = 1.520e-104 Identity = 161/199 (80.90%), Postives = 176/199 (88.44%), Query Frame = 2 Query: 731 VLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKR 1327
VLP LATRDQW+HYWGGSD+QRVGK FEV+A+AFLGLWACYF SFFLGV T ++IG +FLFYWLLAPNVT+FRRN ALRG IA PG GNSVAIFSARV SA EEYHPVTG+PVFLRMVI D +GRALKFRTRTR EYAR+R GM AEAVLVSPDE FEEI+GVSDTFIP AN+WVGEYPY+DKVVM RLLA+RD KR
Sbjct: 2 VLPVLATRDQWSHYWGGSDVQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALRGSIAPFPGARGNSVAIFSARVVSAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAVLVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKR 200
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: D8LTW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTW7_ECTSI) HSP 1 Score: 291 bits (746), Expect = 1.690e-89 Identity = 152/214 (71.03%), Postives = 169/214 (78.97%), Query Frame = 2 Query: 776 GGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKRRQKGVDSSIGSETGDEDEYSELDTSSYYDA 1417
G QRVGK FEV+A+AFLGLWACYF SFFLGV T ++IG +FLFYWLLAPNVT+FRRN AL+G IA PG GNSVAIFSARVASA EEYHPVTG+PVFLRMVI D +GRALKFRTRTR EYAR+R GM AEA+LVSPDE FEEI+GVSDTFIP AN+WVGEYPY+DKVVM RLLA+RD KR D DE ELD +Y D+
Sbjct: 21 GVPTSQRVGKLFEVAAVAFLGLWACYFASFFLGVATMTVIGTSFLFYWLLAPNVTSFRRNRALKGSIAPFPGARGNSVAIFSARVASAVEEYHPVTGQPVFLRMVIEDEDGRALKFRTRTRAEYARVRPGMAAEAILVSPDERFEEILGVSDTFIPAANVWVGEYPYLDKVVMRRLLASRDLKRXXXXXX------XXDADEDEELDPITYRDS 228
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A835YT15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT15_9STRA) HSP 1 Score: 189 bits (479), Expect = 2.660e-48 Identity = 93/187 (49.73%), Postives = 126/187 (67.38%), Query Frame = 2 Query: 761 WAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGNSVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVS--PDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANR 1315
W +YWG +QR GK E ++AFLG+WACYFTSFFLGV TS+IG F+FYWLL PN+ +R+N RG++A P G A+FSA +A+ EE +P+TGK LR+ +AD EGRAL R E AR+ GM E +L+S P FE+I+GVSD +IP ++WVG+YP+++K+ + RLL R
Sbjct: 8 WNNYWG-EGVQRAGKVAESFSVAFLGVWACYFTSFFLGVAITSVIGVVFVFYWLLGPNLLNYRKNWEFRGKLAPSPKEPGTRAALFSASIANVVEEVNPITGKAANLRLEVADEEGRALMLRVPAVREAARVEAGMGIEVLLISDEPGGGFEDILGVSDAYIPAIDLWVGDYPHLNKLALRRLLNER 193
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: K8Z4B4_NANGC (Putative membrane protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=K8Z4B4_NANGC) HSP 1 Score: 171 bits (433), Expect = 5.560e-44 Identity = 103/282 (36.52%), Postives = 147/282 (52.13%), Query Frame = 2 Query: 527 HTTQLLRHARGLGRRTTTCKVPRARAFAQSTHGGSVFGLSPTRR-----RRRPRALNDLRCELTRLSGDAGHKVLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGR-IADVPGGDGNSVAIFSARVASA-----TEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKRRQKG 1339
HT + + R ++C VP A S+ G +P R R R R L C LT L ++LP+ T DQW +YWG ++ + GK +E ++ F GLW +F +F +G+ +++G FLFYW+LAP + A+RRN++ RG A P DG A+FS RV EY+ +P L M + D GR L+ P Y ++R GM E +++S F+E++GVSD F+PD WVGEYPYIDKV LA+R +R G
Sbjct: 22 HTLPMSAYICVPARPVSSCMVPAFSHPAYSSRGRGHITSAPQVRNIAQERHRSRGLAS--CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRARRRGGMG 297
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: K8Z4E0_NANGC (Putative membrane protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8Z4E0_NANGC) HSP 1 Score: 169 bits (427), Expect = 1.380e-43 Identity = 94/247 (38.06%), Postives = 135/247 (54.66%), Query Frame = 2 Query: 617 THGGSVFGLSPTRRRRRPRALNDLRCELTRLSGDAGHKVLPALATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGR-IADVPGGDGNSVAIFSARVASA-----TEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRDSKRRQKG 1339
T G + + + R R R L C LT L ++LP+ T DQW +YWG ++ + GK +E ++ F GLW +F +F +G+ +++G FLFYW+LAP + A+RRN++ RG A P DG A+FS RV EY+ +P L M + D GR L+ P Y ++R GM E +++S F+E++GVSD F+PD WVGEYPYIDKV LA+R +R G
Sbjct: 4 TCGSGLVVRNIAQERHRSRGLAS--CSLTVLRDRTLRRLLPSQFTGDQWKYYWGITESDKFGKIYEAASATFFGLWTSWFLTFLIGLPAATVLGTVFLFYWILAPGLAAYRRNVSFRGTYFARTPRDDGVFGALFSGRVVRVGRIRQAREYN----RPEALVMSMEDESGRKLRVYAPILPSYKKVRPGMRCEGLVLSESPDFDELMGVSDVFVPDCGAWVGEYPYIDKVPFKAFLASRARRRGGMG 244
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A6U4L5P1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4L5P1_9STRA) HSP 1 Score: 126 bits (316), Expect = 3.110e-28 Identity = 67/192 (34.90%), Postives = 100/192 (52.08%), Query Frame = 2 Query: 731 VLPALAT----RDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRGRIADVPGGDGN-----SVAIFSARVASATEEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYI 1279
L LAT +DQW H+WG ++M R + FEV+ ++F GLW +F +F +G ++IG F F+ L+AP A RRN R + D A+FS R+ + G+ L++ + D +GR L+ R +A + EG + A+++S D +F I VSD FIP A W GEYPY+
Sbjct: 98 TLERLATQSVSKDQWLHFWGSNEMARASRIFEVALVSFFGLWTTWFLNFAIGPTVGTLIGTVFAFWGLIAPYFAAARRNADFREGLLDSFSSVWRPKRPLKTALFSGRIVRCERVVSDLKGRRFMLKLELEDEDGRLLQVRAPLHDRHADVMEGQLGLALMISEDPSFSTIERVSDVFIPAAQTWAGEYPYV 289
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A7S3P7K6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7K6_9STRA) HSP 1 Score: 119 bits (298), Expect = 1.490e-25 Identity = 80/257 (31.13%), Postives = 128/257 (49.81%), Query Frame = 2 Query: 641 LSPTRRRRRPRALNDLRCELTRLSGDAGHKVLPA-LATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRN---LALRGRIADVPGGDGNSVAIFSA------------RVASATEEY---------------HPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRD 1318
L P +RRRR A L L L + ++L T +Q+A YWG + +R G+ E S ++FLG++ YF SF +G +I+G F F+ +L+P A +RN L R + GGD + ++ A ++ T EY TG+P LR+ + D +GR L+ TR EY I+ M A+L+S F+++ ++D F+P+A+ W+G+YPY+++V + LLA D
Sbjct: 76 LYPNKRRRRT-ATFALEMALVPLPSEELEQLLSVGPPTGEQYATYWGRTPQERYGRILESSIVSFLGVFFSYFLSFVMGGFVATILGTLFFFWGILSPQFKAAQRNWEFLGGRQLVDPWKGGDPDGAGLYGALYLGFVDDVCVVEQSTDTREYDLADFEDYTMETDDLEQYTGEPYLLRVRLRDSKGRELQIHTRMSEEYLDIQTKMPVMAILLSTRRKFDKLAAITDLFVPEADCWIGDYPYLNRVEVQSLLAEDD 331
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A7S2UD74_9STRA (Hypothetical protein n=2 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UD74_9STRA) HSP 1 Score: 108 bits (271), Expect = 5.990e-22 Identity = 80/268 (29.85%), Postives = 124/268 (46.27%), Query Frame = 2 Query: 626 GSVFGLSPTRRRRRPRALN-DLRCELTRLSGDAGHKVLPA--LATRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRG-RIADVPGGDGNS--------------------VAIFSARVASATEEY---------------HPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLAN 1312
G+ F +S + RR R + +L L + + ++L + L T Q+ YWG + + FE + + LGL+ YF SF LG +++ F + +LAP + A++RN LRG R P D + VA+ +A+ +EY + G P LR+ + D GR L+ R EY I EGM VL+S + F ++ G++D IPDA WVG+YPY+D+ + R+LAN
Sbjct: 62 GNYFTISSVGKGRRGRGYSSELNMALIPIPVETMGRLLSSGTLPTPAQYGAYWGRTSRETYAGLFESANVTVLGLFCAYFLSFILGQFVATLVSFVFAAWIILAPQLKAYQRNWELRGGRDLVDPWSDYDDDIAPDKRGLYGAYYFGHVVHVAVVENPIATDEDEYDIRDFQDYTMEGDELEQLMGLPYQLRLRVCDCNGRELQVHARMSEEYLDISEGMPVACVLLSTSQDFVQLAGMTDMCIPDAECWVGDYPYLDRPLFERMLAN 329
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A1Z5JCW8_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JCW8_FISSO) HSP 1 Score: 103 bits (257), Expect = 1.120e-20 Identity = 67/225 (29.78%), Postives = 109/225 (48.44%), Query Frame = 2 Query: 749 TRDQWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLA-LRGR-IADV--------PGGDGNSVAIFSARVASAT-----------------------EEYHPVTGKPVFLRMVIADGEGRALKFRTRTRPEYA--RIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLLANRD 1318
T Q++ Y G + +R G+ E S + FLG++ YF SF +G +++G F F+ +L+P A++RN L GR + D+ P G A+F +A +E +TG+P LR++ D GR L+ TR EY + G+ A+L+S F + G++D ++PD N+W+G+YPY+D+ M +LA D
Sbjct: 42 TGAQYSVYIGRTPRERFGRLIESSIVGFLGVFFSYFLSFVIGGFFATLLGCIFFFWGILSPEFQAYQRNWEFLGGRPLVDMEDTAAKKDPDKTGLYSALFVGHLADLAVVEDAISDVEYDLDDFRDYTMDGDELEKLTGRPYLLRVLARDRTGRELQIHTRMSEEYVDGALETGLPVTAILLSTKRNFSRLAGITDLYVPDVNLWLGDYPYLDREHMEAMLAEDD 266
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Match: A0A7S0CDT2_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CDT2_9STRA) HSP 1 Score: 102 bits (255), Expect = 5.970e-20 Identity = 67/233 (28.76%), Postives = 105/233 (45.06%), Query Frame = 2 Query: 758 QWAHYWGGSDMQRVGKFFEVSAIAFLGLWACYFTSFFLGVGTTSIIGAAFLFYWLLAPNVTAFRRNLALRG-------------------------RIADVPGGDGNSVAIFSARVASA----------TEEY---------------HPVTGKPVFLRMVIADGEGRALKFRTRTRPEYARIREGMVAEAVLVSPDEAFEEIVGVSDTFIPDANIWVGEYPYIDKVVMLRLL 1306
Q+ YWG + + FE A+ LGL+ YF SF +G G +++GA F F+ LL P + A++RN G + G G + + A V++ +EEY +TG P +R+ I D GR+++ R EY I+EG V +S D +FE + G++D F+PDA +VG+YPY+D+ + R+L
Sbjct: 115 QYGTYWGRTSRETYNAVFESVAVTVLGLFGSYFLSFVIGDGLATLMGAVFAFWTLLGPELKAYQRNWEFVGGRPLIDQWMDDEIMDNTFDIFGDEKEKGERAGNGGMYGSYYIAHVSNVGVVGNVNVLPSEEYPLSEFYDYTMEKDDAERITGLPWMIRLRIKDNSGRSMQVHARMSEEYLDIQEGQPVVCVFLSSDRSFEMLSGLTDFFVPDAGCYVGDYPYLDRPYLNRML 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10062.193.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10062.193.1 >prot_H-fluviatilis_contig10062.193.1 ID=prot_H-fluviatilis_contig10062.193.1|Name=mRNA_H-fluviatilis_contig10062.193.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=459bp MAHGKLTALPFSVVPVSLGAAAAAGGAFRDVPPVMPPVAFSQFPAATHTTback to top mRNA from alignment at H-fluviatilis_contig10062:1867..6016+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10062.193.1 ID=mRNA_H-fluviatilis_contig10062.193.1|Name=mRNA_H-fluviatilis_contig10062.193.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=4150bp|location=Sequence derived from alignment at H-fluviatilis_contig10062:1867..6016+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10062:1867..6016+ >mRNA_H-fluviatilis_contig10062.193.1 ID=mRNA_H-fluviatilis_contig10062.193.1|Name=mRNA_H-fluviatilis_contig10062.193.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=2754bp|location=Sequence derived from alignment at H-fluviatilis_contig10062:1867..6016+ (Heribaudiella fluviatilis SAG_13_90)back to top |