mRNA_H-fluviatilis_contig10042.148.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig10042.148.1
Unique NamemRNA_H-fluviatilis_contig10042.148.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A842V0P7_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A842V0P7_9ARCH)

HSP 1 Score: 84.0 bits (206), Expect = 2.460e-18
Identity = 37/59 (62.71%), Postives = 42/59 (71.19%), Query Frame = 3
Query:  162 ALCTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCGGRCHCELDTGKCT 338
            A CT DSDCVPDACCHA  C+ R+   DC  +MCTM+C+P TLDCGG C CE   G CT
Sbjct:   30 AECTSDSDCVPDACCHATGCVPREQAPDCTDIMCTMECKPGTLDCGGTCICEQ--GACT 86          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A256XY71_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Woesearchaeota TaxID=1801616 RepID=A0A256XY71_9ARCH)

HSP 1 Score: 71.6 bits (174), Expect = 7.760e-13
Identity = 30/55 (54.55%), Postives = 36/55 (65.45%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCGGRCHCELDTGK 332
            C  D+DC P  CCHA  C+ +    +CEG+MCTM+CR  TLDCGGRC C   T K
Sbjct:  103 CKTDADCAPAECCHATKCVLKSKAPNCEGIMCTMECRQGTLDCGGRCKCIEGTCK 157          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A7J3UH18_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A7J3UH18_9ARCH)

HSP 1 Score: 68.6 bits (166), Expect = 1.480e-12
Identity = 31/62 (50.00%), Postives = 42/62 (67.74%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCG-GRCHCELDTGKCTSSLK 350
            C++DSDCVP +CCH  +C+      +CEG+MCTM+C+P T+DCG G C C     KC + LK
Sbjct:   16 CSKDSDCVPASCCHPDSCVPAGEAPNCEGMMCTMECKPDTMDCGQGDCKCI--NNKCKAILK 75          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A662FAE6_9ARCH (Uncharacterized protein n=3 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A662FAE6_9ARCH)

HSP 1 Score: 67.8 bits (164), Expect = 4.330e-12
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 3
Query:   51 IREILFIGVMLMIVIWFLLTPKQPSDAAPHSLNPDSHALCTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCG-GRCHCE 317
            IR++    ++L++   FLLT  +P               C  DSDCVP+ CCHA AC+ ++   +CEGV CT +C P TLDC  G+C C+
Sbjct:    2 IRKMKRTTILLLLFTAFLLTACKPQQKE-----------CITDSDCVPNKCCHATACVPKEKAPNCEGVFCTAECVPNTLDCNQGKCVCK 80          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A5E4JYK7_9ARCH (Uncharacterized protein n=1 Tax=uncultured archaeon TaxID=115547 RepID=A0A5E4JYK7_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 2.880e-11
Identity = 31/60 (51.67%), Postives = 38/60 (63.33%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCGGRCHCELDTGKCTSSL 347
            C+ D DCV   CCHA AC+ +    +C  VMCTM+CR  TLDCGG C C+   GKC + L
Sbjct:  134 CSTDGDCVAAECCHATACVPKSQAPNCADVMCTMECRGGTLDCGGSCVCK--EGKCNAVL 191          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A7J9Q649_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Woesearchaeota archaeon TaxID=2026803 RepID=A0A7J9Q649_9ARCH)

HSP 1 Score: 62.4 bits (150), Expect = 4.800e-10
Identity = 33/69 (47.83%), Postives = 42/69 (60.87%), Query Frame = 3
Query:  147 NPDSHALCTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCG-GRCHCELDTGKCTSSLK 350
            N    A C+ D DCVP +CCH+          +CEG+MCTM+C+P TLDCG G C C +D  KC + LK
Sbjct:   20 NVPEDAECSYDQDCVPASCCHSXXXXPAGESPNCEGMMCTMECKPGTLDCGQGFCMC-MDN-KCKAILK 86          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A9ENM2_SORC5 (Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) TaxID=448385 RepID=A9ENM2_SORC5)

HSP 1 Score: 63.5 bits (153), Expect = 4.890e-10
Identity = 30/61 (49.18%), Postives = 39/61 (63.93%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCE-GVMCTMDCRPLTLDCGGRCHCELDTGKCTSSL 347
            C  D+DCVP   CHA ACI +     C+ G+MCT +CRP T+DCGG C C+   G+C + L
Sbjct:   66 CKSDADCVPVCACHAAACIAKATAPMCDRGLMCTQECRPGTMDCGGGCLCQ--GGRCAARL 124          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A7J2JM83_9ARCH (Uncharacterized protein n=2 Tax=Candidatus Altiarchaeales archaeon TaxID=2250256 RepID=A0A7J2JM83_9ARCH)

HSP 1 Score: 62.0 bits (149), Expect = 7.840e-10
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCG-GRCHCE 317
            CT+DSDCVP+ CCH  +C+++    +C G+MCTM C+   +DCG GRC C+
Sbjct:   32 CTKDSDCVPEQCCHPTSCVNKRFAPNCSGIMCTMVCQG-PIDCGAGRCVCK 81          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: S4XTL1_SORCE (Uncharacterized protein n=4 Tax=Sorangium cellulosum TaxID=56 RepID=S4XTL1_SORCE)

HSP 1 Score: 61.2 bits (147), Expect = 3.440e-9
Identity = 29/61 (47.54%), Postives = 37/61 (60.66%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCEG-VMCTMDCRPLTLDCGGRCHCELDTGKCTSSL 347
            C  D+DCVP   CH  AC+ +     CEG +MCT +CRP T+DCGG C C    G+C + L
Sbjct:   61 CQSDADCVPVCGCHPAACVAKATAPACEGGMMCTQECRPGTMDCGGGCLCH--EGRCAARL 119          
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Match: A0A1I2ABZ6_9DELT (Uncharacterized protein n=1 Tax=Nannocystis exedens TaxID=54 RepID=A0A1I2ABZ6_9DELT)

HSP 1 Score: 58.5 bits (140), Expect = 3.530e-8
Identity = 27/55 (49.09%), Postives = 31/55 (56.36%), Query Frame = 3
Query:  168 CTRDSDCVPDACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCGGRCHCELDTGK 332
            C  D+DCVP +C      +    K DC  VMCTM C P TLDCGG C CE  + K
Sbjct:   64 CKVDADCVPASCXXXXXXVPAAQKPDCTDVMCTMQCAPNTLDCGGHCACEAGSCK 118          
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10042.148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A842V0P7_9ARCH2.460e-1862.71Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
A0A256XY71_9ARCH7.760e-1354.55Uncharacterized protein n=2 Tax=Candidatus Woesear... [more]
A0A7J3UH18_9ARCH1.480e-1250.00Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
A0A662FAE6_9ARCH4.330e-1240.00Uncharacterized protein n=3 Tax=Candidatus Woesear... [more]
A0A5E4JYK7_9ARCH2.880e-1151.67Uncharacterized protein n=1 Tax=uncultured archaeo... [more]
A0A7J9Q649_9ARCH4.800e-1047.83Uncharacterized protein n=1 Tax=Candidatus Woesear... [more]
A9ENM2_SORC54.890e-1049.18Uncharacterized protein n=1 Tax=Sorangium cellulos... [more]
A0A7J2JM83_9ARCH7.840e-1050.98Uncharacterized protein n=2 Tax=Candidatus Altiarc... [more]
S4XTL1_SORCE3.440e-947.54Uncharacterized protein n=4 Tax=Sorangium cellulos... [more]
A0A1I2ABZ6_9DELT3.530e-849.09Uncharacterized protein n=1 Tax=Nannocystis exeden... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig10042contigH-fluviatilis_contig10042:6787..7400 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score64.7
Seed ortholog evalue3.2e-08
Seed eggNOG ortholog448385.sce0718
EggNOG OGs1QT9G@1224,29PVA@1,2WZIJ@28221,2Z285@29,30ATI@2,4357I@68525
Best tax levelMyxococcales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons5
Model size458
Cds size339
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.2815642-UTR-H-fluviatilis_contig10042:6786..68301622929012.2815642-UTR-H-fluviatilis_contig10042:6786..6830Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10042 6787..6830 +
1691135148.7553182-UTR-H-fluviatilis_contig10042:6786..68301691135148.7553182-UTR-H-fluviatilis_contig10042:6786..6830Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10042 6787..6830 +
1622929012.3599887-UTR-H-fluviatilis_contig10042:7325..74001622929012.3599887-UTR-H-fluviatilis_contig10042:7325..7400Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10042 7326..7400 +
1691135148.8087604-UTR-H-fluviatilis_contig10042:7325..74001691135148.8087604-UTR-H-fluviatilis_contig10042:7325..7400Heribaudiella fluviatilis SAG_13_90UTRH-fluviatilis_contig10042 7326..7400 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.2967992-CDS-H-fluviatilis_contig10042:6830..69511622929012.2967992-CDS-H-fluviatilis_contig10042:6830..6951Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 6831..6951 +
1691135148.7646294-CDS-H-fluviatilis_contig10042:6830..69511691135148.7646294-CDS-H-fluviatilis_contig10042:6830..6951Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 6831..6951 +
1622929012.3126554-CDS-H-fluviatilis_contig10042:6985..70491622929012.3126554-CDS-H-fluviatilis_contig10042:6985..7049Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 6986..7049 +
1691135148.773469-CDS-H-fluviatilis_contig10042:6985..70491691135148.773469-CDS-H-fluviatilis_contig10042:6985..7049Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 6986..7049 +
1622929012.324904-CDS-H-fluviatilis_contig10042:7108..71561622929012.324904-CDS-H-fluviatilis_contig10042:7108..7156Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 7109..7156 +
1691135148.782298-CDS-H-fluviatilis_contig10042:7108..71561691135148.782298-CDS-H-fluviatilis_contig10042:7108..7156Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 7109..7156 +
1622929012.3346097-CDS-H-fluviatilis_contig10042:7188..72621622929012.3346097-CDS-H-fluviatilis_contig10042:7188..7262Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 7189..7262 +
1691135148.7932115-CDS-H-fluviatilis_contig10042:7188..72621691135148.7932115-CDS-H-fluviatilis_contig10042:7188..7262Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 7189..7262 +
1622929012.3458865-CDS-H-fluviatilis_contig10042:7293..73251622929012.3458865-CDS-H-fluviatilis_contig10042:7293..7325Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 7294..7325 +
1691135148.8010361-CDS-H-fluviatilis_contig10042:7293..73251691135148.8010361-CDS-H-fluviatilis_contig10042:7293..7325Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig10042 7294..7325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig10042.148.1prot_H-fluviatilis_contig10042.148.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig10042 6831..7325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig10042.148.1

>prot_H-fluviatilis_contig10042.148.1 ID=prot_H-fluviatilis_contig10042.148.1|Name=mRNA_H-fluviatilis_contig10042.148.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=113bp
MKIREILFIGVMLMIVIWFLLTPKQPSDAAPHSLNPDSHALCTRDSDCVP
DACCHARACIHRDLKRDCEGVMCTMDCRPLTLDCGGRCHCELDTGKCTSS
LKGFGRQPDAVA*
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mRNA from alignment at H-fluviatilis_contig10042:6787..7400+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig10042.148.1 ID=mRNA_H-fluviatilis_contig10042.148.1|Name=mRNA_H-fluviatilis_contig10042.148.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=614bp|location=Sequence derived from alignment at H-fluviatilis_contig10042:6787..7400+ (Heribaudiella fluviatilis SAG_13_90)
GTAATCTCGAGACGATCGTTATCCATTTGGCTTTTCCTGGTTGCATGAAG ATAAGGGAGATACTTTTCATTGGTGTGATGCTTATGATTGTGATCTGGTT CCTGTTGACCCCGAAACAACCGTCGGATGCAGCTCCCCACTCGTTGAACC CTGACAGTCATGCTCGTACGGACGTCATTTTGTTTGATTGTGATTTTAGT GTGCACAAGGGATAGTGATTGTGTACCTGATGCGTGCTGTCATGCTAGAG CGTGCATTCACAGGTATTTAGCGAATTCTCAGTTCTGTTGACATCCAGCG GTTTTAACTCCTTCGTCCACAGGGATTTGAAAAGGGACTGCGAGGGTGTA ATGTGCACCATGGATTGCCGGTAAGAAATACGCAATTTGAGTCCTGACAC AGGCCATTGACTTTGGACTGCGGTGGTCGGTGCCACTGCGAGTTGGACAC AGGGAAATGCACAAGTTCATTGAAAGGTATGGAAATCTGGTAGCTTGACT GTGTTAGGATTCGGGCGTCAGCCGGACGCTGTTGCGTGATAGCTACAAGA CAGCGATGGGAAAGCCAGCGATCGCGAGCGTATTCATCATGCGTTCGCAA TTATTGTCTTGCAT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig10042:6787..7400+

>mRNA_H-fluviatilis_contig10042.148.1 ID=mRNA_H-fluviatilis_contig10042.148.1|Name=mRNA_H-fluviatilis_contig10042.148.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=678bp|location=Sequence derived from alignment at H-fluviatilis_contig10042:6787..7400+ (Heribaudiella fluviatilis SAG_13_90)
ATGAAGATAAGGGAGATACTTTTCATTGGTGTGATGCTTATGATTGTGAT
CTGGTTCCTGTTGACCCCGAAACAACCGTCGGATGCAGCTCCCCACTCGT
TGAACCCTGACAGTCATGCTCATGAAGATAAGGGAGATACTTTTCATTGG
TGTGATGCTTATGATTGTGATCTGGTTCCTGTTGACCCCGAAACAACCGT
CGGATGCAGCTCCCCACTCGTTGAACCCTGACAGTCATGCTCTGTGCACA
AGGGATAGTGATTGTGTACCTGATGCGTGCTGTCATGCTAGAGCGTGCAT
TCACAGTGTGCACAAGGGATAGTGATTGTGTACCTGATGCGTGCTGTCAT
GCTAGAGCGTGCATTCACAGGGATTTGAAAAGGGACTGCGAGGGTGTAAT
GTGCACCATGGATTGCCGGGATTTGAAAAGGGACTGCGAGGGTGTAATGT
GCACCATGGATTGCCGGCCATTGACTTTGGACTGCGGTGGTCGGTGCCAC
TGCGAGTTGGACACAGGGAAATGCACAAGTTCATTGAAAGGCCATTGACT
TTGGACTGCGGTGGTCGGTGCCACTGCGAGTTGGACACAGGGAAATGCAC
AAGTTCATTGAAAGGATTCGGGCGTCAGCCGGACGCTGTTGCGTGAGATT
CGGGCGTCAGCCGGACGCTGTTGCGTGA
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