mRNA_H-fluviatilis_contig10038.136.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Match: D8LU46_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU46_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 1.750e-8 Identity = 29/42 (69.05%), Postives = 31/42 (73.81%), Query Frame = 1 Query: 4 YRSGFCYAEGVLPAGTYTVIISTYNPGQVL--QVVPSVACGP 123
YR GFCYA G+LPAGTYTVI STY PGQV + VPSV P
Sbjct: 373 YRMGFCYAGGILPAGTYTVIFSTYKPGQVSLHRTVPSVDTPP 414
BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Match: D8LU44_ECTSI (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU44_ECTSI) HSP 1 Score: 59.3 bits (142), Expect = 2.420e-8 Identity = 31/59 (52.54%), Postives = 34/59 (57.63%), Query Frame = 1 Query: 4 YRSGFCYAEGVLPAGTYTVIISTYNPGQVLQVVPSVACGPISLFFVCFPVATLTRAERE 180
YR GFCYAE VLPAGTYTVI STY PGQV G ++ PV TR +E
Sbjct: 322 YRQGFCYAENVLPAGTYTVIFSTYKPGQV--------AGFVAKLCTTSPVRPPTRIPQE 372
BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Match: A0A6H5KSF9_9PHAE (Calpain catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSF9_9PHAE) HSP 1 Score: 58.2 bits (139), Expect = 5.860e-8 Identity = 25/29 (86.21%), Postives = 25/29 (86.21%), Query Frame = 1 Query: 4 YRSGFCYAEGVLPAGTYTVIISTYNPGQV 90
YR GFCYAE VLPAGTYTVI STY PGQV
Sbjct: 326 YRPGFCYAENVLPAGTYTVIFSTYRPGQV 354 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10038.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10038.136.1 >prot_H-fluviatilis_contig10038.136.1 ID=prot_H-fluviatilis_contig10038.136.1|Name=mRNA_H-fluviatilis_contig10038.136.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=67bp MYRSGFCYAEGVLPAGTYTVIISTYNPGQVLQVVPSVACGPISLFFVCFPback to top mRNA from alignment at H-fluviatilis_contig10038:622..881+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10038.136.1 ID=mRNA_H-fluviatilis_contig10038.136.1|Name=mRNA_H-fluviatilis_contig10038.136.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=260bp|location=Sequence derived from alignment at H-fluviatilis_contig10038:622..881+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10038:622..881+ >mRNA_H-fluviatilis_contig10038.136.1 ID=mRNA_H-fluviatilis_contig10038.136.1|Name=mRNA_H-fluviatilis_contig10038.136.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=402bp|location=Sequence derived from alignment at H-fluviatilis_contig10038:622..881+ (Heribaudiella fluviatilis SAG_13_90)back to top |