mRNA_H-fluviatilis_contig10012.84.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
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Overview
Homology
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A6H5L2E6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2E6_9PHAE) HSP 1 Score: 78.2 bits (191), Expect = 3.120e-12 Identity = 68/190 (35.79%), Postives = 91/190 (47.89%), Query Frame = 2 Query: 35 QLYHDAQATIRGTF-IVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPSRNVDLKDLADRFGEATTVERV-----YREHSDWKR-VSARLDGSLDYTN-TGWWDKGAVRNSDGRDVDA-KSSWESGCVDAVSI-------LQRHPSYKNITRQTFAALEREGMMMLRPKWAGQRGAWAEGRS-GGRG 553
QL HD QATIR F +VL+ Q C E++ L IGTDGLENLFA+VRTL + NVD K+ +RFG VE+V R H ++ V+ L T + GA G ++DA + ESG + S + + + F R+ + LR AGQ G+ R GGRG
Sbjct: 82 QLDHDLQATIRLLFYVVLEAQVRCPRERLYLWMIGTDGLENLFAIVRTLTHASNVDAKEAIERFGAVIGVEQVDAVDILRGHPSYEASVNRETISELQKVGVTTFLPFGATEGLAGGELDAFLHATESGPGEITSSCEVDGKQIHKQRALTEFMGPAFQNASRDRLKRLRGYTAGQSGSATGSRGVGGRG 271
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A5C3NSN4_9APHY (Uncharacterized protein n=1 Tax=Polyporus arcularius HHB13444 TaxID=1314778 RepID=A0A5C3NSN4_9APHY) HSP 1 Score: 58.9 bits (141), Expect = 7.350e-6 Identity = 33/87 (37.93%), Postives = 49/87 (56.32%), Query Frame = 2 Query: 38 LYHDAQATIRGTFIVLQGQAHCQGE-KMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARL 292
LY DAQ I+ ++ + + ++ + Q+GTDGLE +F +VRT++ S NVD LA+R AT R+ EH +W R RL
Sbjct: 527 LYLDAQIMIKNAYMCTAKIMVVRPDGRLWIIQLGTDGLETVFGIVRTMIGSDSNVDQLQLANRVSGATQCSRILHEHPEWDRGPRRL 613
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A6H5K6M3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M3_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 8.140e-6 Identity = 34/81 (41.98%), Postives = 44/81 (54.32%), Query Frame = 2 Query: 47 DAQATIRGTFIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPSRNVDLKDLADRFGEATTVERV-----YREHSDWK 274
D A R + L+ + C E++ L IGTD LENLFA+V TL + NVD K+ +RF A VE+V R HS K
Sbjct: 850 DGLAAPRVVYFQLEAKVRCPRERLYLWVIGTDELENLFAIVHTLTHASNVDAKEAIERFRAAIEVEKVDAVDILRGHSSCK 930
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A409YRX2_9AGAR (Uncharacterized protein n=1 Tax=Gymnopilus dilepis TaxID=231916 RepID=A0A409YRX2_9AGAR) HSP 1 Score: 57.0 bits (136), Expect = 3.330e-5 Identity = 30/88 (34.09%), Postives = 47/88 (53.41%), Query Frame = 2 Query: 35 QLYHDAQATIRGT-FIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARL 292
QLY D ++ F V + +A + + +GTD LE LF ++RT++ S NVD+ LA+R G T V ++ +H +W R L
Sbjct: 496 QLYSDVMIMVKNIYFCVAKAKADNPTDSFWITLLGTDRLEELFGILRTMVGSDANVDVLQLAERLGGTTEVSNIFAKHPEWDRAPRPL 583
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A166CTH7_9AGAM (Uncharacterized protein n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A166CTH7_9AGAM) HSP 1 Score: 57.0 bits (136), Expect = 3.560e-5 Identity = 51/172 (29.65%), Postives = 74/172 (43.02%), Query Frame = 2 Query: 29 SYQLYHDAQATIRGT-FIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARLD----------------GSLDYTNTGWWDKGAVRNSDGRDVDAKSSWESG---CVDAVSILQRHPSYKNITRQTFAALEREG 481
S Q Y D Q TI+ F V + + C K L +GTD LE LF + RT++ + N DL LA R A ++ +E W + RLD LD+ W KG VR + V ++ W SG +D ++ + PS ++F +E EG
Sbjct: 874 SSQFYFDMQQTIKNAYFCVAKTKRDCPQAKFYLILVGTDALEKLFGIYRTMIGTDTNADLYQLATRATGAVKCVKILQEEKGWDSGTRRLDIKTSILDEAPEDKKTAQKLDHLKPESW-KGDVRVAG---VGLQTCWNSGRSMAIDDMTDCEMTPS------KSFDEMESEG 1035
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A166H4Q4_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Sistotremastrum suecicum HHB10207 ss-3 TaxID=1314776 RepID=A0A166H4Q4_9AGAM) HSP 1 Score: 56.6 bits (135), Expect = 3.740e-5 Identity = 37/105 (35.24%), Postives = 50/105 (47.62%), Query Frame = 2 Query: 29 SYQLYHDAQATIRGT-FIVLQGQAHCQGEKMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARLDGSLDYTNTGWWDKG 337
S Q Y D Q TI+ F V + + C K L +GTD LE LF + RT++ + N DL LA R A ++ +E W + RLD T WD+G
Sbjct: 460 SSQFYFDMQQTIKNAYFCVAKTKRDCPKAKFYLILVGTDALEKLFGIYRTMIGTDTNADLYQLATRATGAVKCVKILQEEKGWDSGTRRLD-----IKTTVWDEG 559
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Match: A0A371DN83_9APHY (PHD domain-containing protein n=1 Tax=Polyporus brumalis TaxID=139420 RepID=A0A371DN83_9APHY) HSP 1 Score: 56.2 bits (134), Expect = 6.210e-5 Identity = 32/87 (36.78%), Postives = 48/87 (55.17%), Query Frame = 2 Query: 38 LYHDAQATIRGTFIVLQGQAHCQGE-KMCLCQIGTDGLENLFAVVRTLMPS-RNVDLKDLADRFGEATTVERVYREHSDWKRVSARL 292
LY DAQ I+ ++ + ++ + +GTDGLE +F +VRT++ S NVD LA+R AT R+ +EH +W R RL
Sbjct: 923 LYLDAQIMIKNAYVCTAKMIVDRPTGRIWIIMLGTDGLEKVFGIVRTMIGSDSNVDQLQLANRVTGATQCSRILQEHPEWDRGPRRL 1009 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig10012.84.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7 ZOOMx 1POSITION0
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig10012.84.1 >prot_H-fluviatilis_contig10012.84.1 ID=prot_H-fluviatilis_contig10012.84.1|Name=mRNA_H-fluviatilis_contig10012.84.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=152bp MCLCQIGTDGLENLFAVVRTLMPSRNVDLKDLADRFGEATTVERVYREHSback to top mRNA from alignment at H-fluviatilis_contig10012:5572..7191+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig10012.84.1 ID=mRNA_H-fluviatilis_contig10012.84.1|Name=mRNA_H-fluviatilis_contig10012.84.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=1620bp|location=Sequence derived from alignment at H-fluviatilis_contig10012:5572..7191+ (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig10012:5572..7191+ >mRNA_H-fluviatilis_contig10012.84.1 ID=mRNA_H-fluviatilis_contig10012.84.1|Name=mRNA_H-fluviatilis_contig10012.84.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=912bp|location=Sequence derived from alignment at H-fluviatilis_contig10012:5572..7191+ (Heribaudiella fluviatilis SAG_13_90)back to top |