mRNA_H-fluviatilis_contig1001.79.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig1001.79.1
Unique NamemRNA_H-fluviatilis_contig1001.79.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5KJ52_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ52_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 1.040e-32
Identity = 71/122 (58.20%), Postives = 81/122 (66.39%), Query Frame = 2 
Query:    2 HTAVDVEYWIMK--------VVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D+E WI K        + TE+F  +MG+ VQ  DVF+AFTVDQGGNVVNA   L V V    AHRLN+V +W LGI GS  T +N  ME LMKRLAA VG FSHSAVNN EL  +Q L
Sbjct:  311 HTAADIEPWIEKASFTTFKLLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRL 432
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BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5JTB8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTB8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 3.850e-32
Identity = 67/114 (58.77%), Postives = 78/114 (68.42%), Query Frame = 2 
Query:    2 HTAVDVEYWIMKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D++ WI K+  E+F   MG+ VQ +DVF+AFTVDQG N++NA +ALGV V     HRLNT VVW LGI G      N  M TLMK+LAA VG FSHSAVNN EL  LQ L
Sbjct:  136 HTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRL 247
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5JGG8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGG8_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 4.960e-32
Identity = 67/114 (58.77%), Postives = 78/114 (68.42%), Query Frame = 2 
Query:    2 HTAVDVEYWIMKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D++ WI K+  E+F   MG+ VQ +DVF+AFTVDQG N++NA +ALGV V     HRLNT VVW LGI G      N  M TLMK+LAA VG FSHSAVNN EL  LQ L
Sbjct:  331 HTAEDIQPWIEKLTLEYFSGFMGESVQPSDVFLAFTVDQGKNIINACTALGVTVVECNCHRLNTAVVWALGIAGKGRL--NPAMGTLMKKLAAMVGVFSHSAVNNDELKELQRL 442
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5JQI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQI6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 2.550e-31
Identity = 66/114 (57.89%), Postives = 78/114 (68.42%), Query Frame = 2 
Query:    2 HTAVDVEYWIMKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D++ WI  +  E+F  LMG  V++ DVF+AFTVDQG NVVNA +ALGV V     HR+N+ V+W LGI GS  TCKN PM    K+LAA VG FSHSAVNN  L  LQ L
Sbjct:  140 HTADDIKPWIEALTLEYFTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSATTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRL 249
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5JXV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXV5_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 3.970e-31
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 2 
Query:    2 HTAVDVEYWIMKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D++ WI  +  E+F  L+G  VQ +DVF+ FTVDQG N+VNA +ALGV V     HR+N+ V+W LGI G   TCKN  M  LMK+LAA VG FSHSAVNN  L  +Q L
Sbjct:  137 HTAEDIKPWIEALTLEYFKDLIGPSVQPHDVFLGFTVDQGKNIVNAYTALGVPVVECNCHRVNSAVLWALGIAGCARTCKNKLMGDLMKKLAASVGVFSHSAVNNDMLKEIQRL 250
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5JZU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZU3_9PHAE)

HSP 1 Score: 123 bits (308), Expect = 2.300e-30
Identity = 65/114 (57.02%), Postives = 77/114 (67.54%), Query Frame = 2 
Query:    2 HTAVDVEYWIMKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D++ WI  +  E+   LMG  V++ DVF+AFTVDQG NVVNA +ALGV V     HR+N+ V+W LGI GS  TCKN PM    K+LAA VG FSHSAVNN  L  LQ L
Sbjct:  140 HTADDIKPWIEALTLEYLTDLMGGSVESQDVFLAFTVDQGKNVVNACTALGVPVVECNCHRVNSAVLWALGIAGSVTTCKNKPM----KKLAALVGVFSHSAVNNDMLKELQRL 249
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5KAN7_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAN7_9PHAE)

HSP 1 Score: 122 bits (305), Expect = 2.920e-30
Identity = 64/104 (61.54%), Postives = 74/104 (71.15%), Query Frame = 2 
Query:   32 MKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            M++ TE+F  +MG+ VQ  DVF+AFTVDQGGNVVNA   L V V    AHRLN+V +W LGI GS  T +N  ME LMKRLAA VG FSHSAVNN EL  +Q L
Sbjct:    1 MQLTTEFFADMMGENVQPKDVFLAFTVDQGGNVVNACRNLDVEVLKCNAHRLNSVTMWALGINGSIRTGENPAMEKLMKRLAAVVGVFSHSAVNNDELKDIQRL 104
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5JRT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRT6_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 5.240e-30
Identity = 64/114 (56.14%), Postives = 77/114 (67.54%), Query Frame = 2 
Query:    2 HTAVDVEYWIMKVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            HTA D+  WI ++  E+F   MG+ V+  DVF+AFTVDQGGNVVNA  ALGV V     HR+NT V+W LGI G+    +N  M  LMK+LAA VG FSHSAVNN +L  LQ L
Sbjct:  329 HTADDISPWIEELTREYFADFMGEDVEPKDVFLAFTVDQGGNVVNACKALGVPVVKCNCHRVNTAVLWALGIAGNGR--RNKVMGDLMKKLAALVGVFSHSAVNNDKLKELQRL 440
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5KDJ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDJ6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 4.400e-28
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 2 
Query:   35 KVVTEWFGKLMGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            ++  E+FG  MG+ V+ +DVF+AFTVDQGGNVVNA +ALGV V     HR+N+ VVW LGI GS  TC+N  M  LMK+LAA VG FS SAVNN  L  LQ L
Sbjct:    6 QLTKEYFGGFMGESVEPSDVFLAFTVDQGGNVVNACTALGVQVVKCNCHRINSAVVWALGIAGSATTCRNTKMGGLMKKLAALVGVFSPSAVNNM-LKELQRL 107
[Close]
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Match: A0A6H5KAS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAS2_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 3.480e-21
Identity = 53/93 (56.99%), Postives = 62/93 (66.67%), Query Frame = 2 
Query:   65 MGDGVQANDVFIAFTVDQGGNVVNAVSALGVAVALYCAHRLNTVVVWMLGIGGSQATCKNAPMETLMKRLAACVGKFSHSAVNNSELNALQEL 343
            MG+ V  ++ F+AFTVDQG N++NA +AL V V     HR+NT VVW LGI       KN  M TLMK+LAA VG FSHSAVNN EL  LQ L
Sbjct:    1 MGESVVPSNDFLAFTVDQGKNIINACTALDVTVVECNCHRVNTAVVWALGIAAKGR--KNPTMGTLMKKLAAMVGVFSHSAVNNDELKELQRL 91
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig1001.79.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5KJ52_9PHAE1.040e-3258.20Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JTB8_9PHAE3.850e-3258.77Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JGG8_9PHAE4.960e-3258.77Dimer_Tnp_hAT domain-containing protein n=4 Tax=Ec... [more]
A0A6H5JQI6_9PHAE2.550e-3157.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXV5_9PHAE3.970e-3155.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JZU3_9PHAE2.300e-3057.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAN7_9PHAE2.920e-3061.54Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JRT6_9PHAE5.240e-3056.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KDJ6_9PHAE4.400e-2859.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KAS2_9PHAE3.480e-2156.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig1001contigH-fluviatilis_contig1001:22968..23529 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size350
Cds size348
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928997.0851612-CDS-H-fluviatilis_contig1001:22967..230041622928997.0851612-CDS-H-fluviatilis_contig1001:22967..23004Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1001 22968..23004 +
1691135144.1809933-CDS-H-fluviatilis_contig1001:22967..230041691135144.1809933-CDS-H-fluviatilis_contig1001:22967..23004Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1001 22968..23004 +
1622928997.101797-CDS-H-fluviatilis_contig1001:23217..235281622928997.101797-CDS-H-fluviatilis_contig1001:23217..23528Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1001 23218..23528 +
1691135144.193348-CDS-H-fluviatilis_contig1001:23217..235281691135144.193348-CDS-H-fluviatilis_contig1001:23217..23528Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig1001 23218..23528 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig1001.79.1prot_H-fluviatilis_contig1001.79.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig1001 22968..23528 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig1001.79.1

>prot_H-fluviatilis_contig1001.79.1 ID=prot_H-fluviatilis_contig1001.79.1|Name=mRNA_H-fluviatilis_contig1001.79.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=116bp
AHCRRCGVLDYEGCDGVVREVDGRRCAGERRVHCVYRGPRRQRGQRRKCT
GRRSGAVLRPPLEHCGGLDAGHWRLPGHVQERADGDSDEEAGGVRRQIQP
LGGQQQRAKRTARAGA
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mRNA from alignment at H-fluviatilis_contig1001:22968..23529+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig1001.79.1 ID=mRNA_H-fluviatilis_contig1001.79.1|Name=mRNA_H-fluviatilis_contig1001.79.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=562bp|location=Sequence derived from alignment at H-fluviatilis_contig1001:22968..23529+ (Heribaudiella fluviatilis SAG_13_90)
GCACACTGCCGTCGATGTGGAGTACTGGATTATGAAGGTATGATACAGGG
ATTGTATATATTGTACATTTTGGGGTTTGGGATTTTTTACATTGGCTGTG
CACTCGCAAGAGGAAAGCTGATATTTGACACTTCGACGGTTTGCTTTGCG
ATCATGCAGCACTCGATGTGCGAAAAATACAGCTGTGGTGCGCTACAGTC
TCCCTACGATCGCCCTTCTGACTGCCAGTCATAAACTCTCCGTTGTGCAG
GTTGTGACGGAGTGGTTCGGGAAGTTGATGGGCGACGGTGTGCAGGCGAA
CGACGTGTTCATTGCGTTTACCGTGGACCAAGGCGGCAACGTGGTCAACG
CCGTAAGTGCACTGGGCGTCGCAGTGGCGCTGTATTGCGCCCACCGCTTG
AACACTGTGGTGGTCTGGATGCTGGGCATTGGCGGCTCCCAGGCCACGTG
CAAGAACGCGCCGATGGAGACTCTGATGAAGAGGCTGGCGGCGTGCGTCG
GCAAATTCAGCCACTCGGCGGTCAACAACAGCGAGCTAAACGCACTGCAA
GAGCTGGTGCCG
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Coding sequence (CDS) from alignment at H-fluviatilis_contig1001:22968..23529+

>mRNA_H-fluviatilis_contig1001.79.1 ID=mRNA_H-fluviatilis_contig1001.79.1|Name=mRNA_H-fluviatilis_contig1001.79.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=696bp|location=Sequence derived from alignment at H-fluviatilis_contig1001:22968..23529+ (Heribaudiella fluviatilis SAG_13_90)
GCACACTGCCGTCGATGTGGAGTACTGGATTATGAAGGCACACTGCCGTC
GATGTGGAGTACTGGATTATGAAGGTTGTGACGGAGTGGTTCGGGAAGTT
GATGGGCGACGGTGTGCAGGCGAACGACGTGTTCATTGCGTTTACCGTGG
ACCAAGGCGGCAACGTGGTCAACGCCGTAAGTGCACTGGGCGTCGCAGTG
GCGCTGTATTGCGCCCACCGCTTGAACACTGTGGTGGTCTGGATGCTGGG
CATTGGCGGCTCCCAGGCCACGTGCAAGAACGCGCCGATGGAGACTCTGA
TGAAGAGGCTGGCGGCGTGCGTCGGCAAATTCAGCCACTCGGCGGTCAAC
AACAGCGAGCTAAACGCACTGCAAGAGCTGGTGCCGTTGTGACGGAGTGG
TTCGGGAAGTTGATGGGCGACGGTGTGCAGGCGAACGACGTGTTCATTGC
GTTTACCGTGGACCAAGGCGGCAACGTGGTCAACGCCGTAAGTGCACTGG
GCGTCGCAGTGGCGCTGTATTGCGCCCACCGCTTGAACACTGTGGTGGTC
TGGATGCTGGGCATTGGCGGCTCCCAGGCCACGTGCAAGAACGCGCCGAT
GGAGACTCTGATGAAGAGGCTGGCGGCGTGCGTCGGCAAATTCAGCCACT
CGGCGGTCAACAACAGCGAGCTAAACGCACTGCAAGAGCTGGTGCC
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