Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 318 |
| Cds size | 303 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.98937-CDS-H-fluviatilis_contig100099:157..251 | 1622928996.98937-CDS-H-fluviatilis_contig100099:157..251 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100099 158..251 - |
| 1691135144.107723-CDS-H-fluviatilis_contig100099:157..251 | 1691135144.107723-CDS-H-fluviatilis_contig100099:157..251 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100099 158..251 - |
| 1622928997.0025563-CDS-H-fluviatilis_contig100099:294..393 | 1622928997.0025563-CDS-H-fluviatilis_contig100099:294..393 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100099 295..393 - |
| 1691135144.1215682-CDS-H-fluviatilis_contig100099:294..393 | 1691135144.1215682-CDS-H-fluviatilis_contig100099:294..393 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100099 295..393 - |
| 1622928997.0164096-CDS-H-fluviatilis_contig100099:451..561 | 1622928997.0164096-CDS-H-fluviatilis_contig100099:451..561 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100099 452..561 - |
| 1691135144.1408446-CDS-H-fluviatilis_contig100099:451..561 | 1691135144.1408446-CDS-H-fluviatilis_contig100099:451..561 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100099 452..561 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928997.0379858-UTR-H-fluviatilis_contig100099:561..574 | 1622928997.0379858-UTR-H-fluviatilis_contig100099:561..574 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig100099 562..574 - |
| 1691135144.1522305-UTR-H-fluviatilis_contig100099:561..574 | 1691135144.1522305-UTR-H-fluviatilis_contig100099:561..574 | Heribaudiella fluviatilis SAG_13_90 | UTR | H-fluviatilis_contig100099 562..574 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100099.78.1 >prot_H-fluviatilis_contig100099.78.1 ID=prot_H-fluviatilis_contig100099.78.1|Name=mRNA_H-fluviatilis_contig100099.78.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=101bp
MADGEGTRTHTKEETDDKVSSASLTPVSSGSIASVAGASGESSTADAADK
PKAVNLCGWLKKRTNKTIKGLGIYKRRFVVLREGLLLYYDDEQPVAPTVK
A back to topmRNA from alignment at H-fluviatilis_contig100099:158..574- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig100099.78.1 ID=mRNA_H-fluviatilis_contig100099.78.1|Name=mRNA_H-fluviatilis_contig100099.78.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=417bp|location=Sequence derived from alignment at H-fluviatilis_contig100099:158..574- (Heribaudiella fluviatilis SAG_13_90)
CAGCGGTTATTTAATGGCTGATGGCGAAGGGACACGAACCCACACGAAGG
AAGAGACTGATGACAAAGTCTCTTCTGCGTCCCTGACCCCGGTGTCTTCT
GGGTCAATAGCTTCCGTAGCAGGGTATGCGTGCCACCTCCCAGTTGATCG
TCATTCGCACTAACGCTTGCCCCATGCTCAGAGCCAGCGGCGAATCATCG
ACTGCCGATGCAGCAGACAAGCCAAAAGCAGTCAACCTGTGCGGATGGCT
CAAGAAGCGGACCAACAAAACCATCAAAGGGTACTGCCAGAGCGGTGACG
TGGGACACCCGGTGCCTTTCCAGATTGGGCATTTACAAGCGTCGGTTTGT
GGTGTTGCGCGAGGGATTGCTGCTGTACTACGACGACGAGCAGCCCGTGG
CACCGACAGTGAAGGCC back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig100099:158..574- >mRNA_H-fluviatilis_contig100099.78.1 ID=mRNA_H-fluviatilis_contig100099.78.1|Name=mRNA_H-fluviatilis_contig100099.78.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=606bp|location=Sequence derived from alignment at H-fluviatilis_contig100099:158..574- (Heribaudiella fluviatilis SAG_13_90)
ATGGCTGATGGCGAAGGGACACGAACCCACACGAAGGAAGAGACTGATGA
CAAAGTCTCTTCTGCGTCCCTGACCCCGGTGTCTTCTGGGTCAATAGCTT
CCGTAGCAGGATGGCTGATGGCGAAGGGACACGAACCCACACGAAGGAAG
AGACTGATGACAAAGTCTCTTCTGCGTCCCTGACCCCGGTGTCTTCTGGG
TCAATAGCTTCCGTAGCAGGAGCCAGCGGCGAATCATCGACTGCCGATGC
AGCAGACAAGCCAAAAGCAGTCAACCTGTGCGGATGGCTCAAGAAGCGGA
CCAACAAAACCATCAAAGGAGCCAGCGGCGAATCATCGACTGCCGATGCA
GCAGACAAGCCAAAAGCAGTCAACCTGTGCGGATGGCTCAAGAAGCGGAC
CAACAAAACCATCAAAGGATTGGGCATTTACAAGCGTCGGTTTGTGGTGT
TGCGCGAGGGATTGCTGCTGTACTACGACGACGAGCAGCCCGTGGCACCG
ACAGTGAAGGCCATTGGGCATTTACAAGCGTCGGTTTGTGGTGTTGCGCG
AGGGATTGCTGCTGTACTACGACGACGAGCAGCCCGTGGCACCGACAGTG
AAGGCC back to top
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