Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Bacteria |
| Seed ortholog score | 60.1 |
| Seed ortholog evalue | 2e-06 |
| Seed eggNOG ortholog | 383381.EH30_02025 |
| EggNOG free text desc. | Autotransporter beta-domain |
| EggNOG OGs | 1NC7A@1224,2UHJJ@28211,COG4625@1,COG4625@2 |
| COG Functional cat. | MU |
| Best tax level | Alphaproteobacteria |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 858 |
| Cds size | 858 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622928996.9421253-CDS-H-fluviatilis_contig100096:3..861 | 1622928996.9421253-CDS-H-fluviatilis_contig100096:3..861 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100096 4..861 + |
| 1691135144.0966957-CDS-H-fluviatilis_contig100096:3..861 | 1691135144.0966957-CDS-H-fluviatilis_contig100096:3..861 | Heribaudiella fluviatilis SAG_13_90 | CDS | H-fluviatilis_contig100096 4..861 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100096.77.1 >prot_H-fluviatilis_contig100096.77.1 ID=prot_H-fluviatilis_contig100096.77.1|Name=mRNA_H-fluviatilis_contig100096.77.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=286bp
NDGLIQTIGANNTTIQVNNGASITNNGNLVATGAGSEAIIAGNDAMIGNT
GLIATDGDDAVAVTVGADSMIDNSGTIMTEGDDADAIVAGDNLDLTNSGT
IAATGADARGIETGDGFMLMNSGTIEATDRAINAGDDVTITNVAGGLINT
TGDADTIQTGENTIIINNGTISNEGFDTKIIDAGDGLTVTNNGTITSDWK
GIEGEANFTLTNNAGALIFSAFDEAVEADGPGLVVVNNGEIISPEDDAID
GDSDVMITNTGLIQGGENDAIELNNGTIINSGRIIS back to topmRNA from alignment at H-fluviatilis_contig100096:4..861+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-fluviatilis_contig100096.77.1 ID=mRNA_H-fluviatilis_contig100096.77.1|Name=mRNA_H-fluviatilis_contig100096.77.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=858bp|location=Sequence derived from alignment at H-fluviatilis_contig100096:4..861+ (Heribaudiella fluviatilis SAG_13_90)
AACGATGGCCTGATCCAGACGATCGGTGCGAATAACACTACAATTCAGGT
CAATAACGGCGCCAGCATCACCAACAATGGCAACCTTGTTGCCACGGGCG
CTGGCTCTGAAGCAATCATTGCCGGCAATGATGCGATGATTGGCAACACC
GGCTTGATCGCAACCGACGGCGACGATGCGGTGGCGGTCACCGTGGGCGC
GGACAGCATGATCGACAACAGCGGCACGATCATGACCGAAGGCGATGATG
CCGATGCCATCGTCGCTGGCGACAATCTCGATCTCACCAATTCCGGCACC
ATCGCGGCAACCGGGGCGGATGCGCGCGGGATCGAAACCGGCGATGGTTT
CATGCTGATGAATTCGGGGACGATCGAAGCGACTGATCGCGCGATCAACG
CTGGCGATGATGTTACCATCACCAACGTGGCAGGCGGCCTGATCAACACC
ACCGGCGATGCCGATACGATCCAGACCGGCGAGAACACGATCATCATCAA
CAATGGCACGATCAGCAACGAAGGTTTTGACACCAAGATCATCGATGCAG
GTGACGGGCTGACCGTGACCAATAATGGCACGATCACCTCCGACTGGAAG
GGGATCGAGGGTGAGGCCAATTTCACGCTGACCAACAATGCGGGCGCTCT
GATCTTCAGCGCCTTCGACGAAGCGGTGGAAGCCGATGGCCCCGGCCTCG
TGGTGGTCAATAACGGCGAAATCATCTCGCCCGAAGATGACGCCATCGAT
GGCGATAGCGATGTGATGATCACCAACACCGGCCTTATTCAGGGCGGGGA
AAATGATGCGATTGAGCTGAACAACGGCACGATCATCAATTCGGGTCGGA
TCATCTCG back to topCoding sequence (CDS) from alignment at H-fluviatilis_contig100096:4..861+ >mRNA_H-fluviatilis_contig100096.77.1 ID=mRNA_H-fluviatilis_contig100096.77.1|Name=mRNA_H-fluviatilis_contig100096.77.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=1716bp|location=Sequence derived from alignment at H-fluviatilis_contig100096:4..861+ (Heribaudiella fluviatilis SAG_13_90)
AACGATGGCCTGATCCAGACGATCGGTGCGAATAACACTACAATTCAGGT
CAATAACGGCGCCAGCATCACCAACAATGGCAACCTTGTTGCCACGGGCG
CTGGCTCTGAAGCAATCATTGCCGGCAATGATGCGATGATTGGCAACACC
GGCTTGATCGCAACCGACGGCGACGATGCGGTGGCGGTCACCGTGGGCGC
GGACAGCATGATCGACAACAGCGGCACGATCATGACCGAAGGCGATGATG
CCGATGCCATCGTCGCTGGCGACAATCTCGATCTCACCAATTCCGGCACC
ATCGCGGCAACCGGGGCGGATGCGCGCGGGATCGAAACCGGCGATGGTTT
CATGCTGATGAATTCGGGGACGATCGAAGCGACTGATCGCGCGATCAACG
CTGGCGATGATGTTACCATCACCAACGTGGCAGGCGGCCTGATCAACACC
ACCGGCGATGCCGATACGATCCAGACCGGCGAGAACACGATCATCATCAA
CAATGGCACGATCAGCAACGAAGGTTTTGACACCAAGATCATCGATGCAG
GTGACGGGCTGACCGTGACCAATAATGGCACGATCACCTCCGACTGGAAG
GGGATCGAGGGTGAGGCCAATTTCACGCTGACCAACAATGCGGGCGCTCT
GATCTTCAGCGCCTTCGACGAAGCGGTGGAAGCCGATGGCCCCGGCCTCG
TGGTGGTCAATAACGGCGAAATCATCTCGCCCGAAGATGACGCCATCGAT
GGCGATAGCGATGTGATGATCACCAACACCGGCCTTATTCAGGGCGGGGA
AAATGATGCGATTGAGCTGAACAACGGCACGATCATCAATTCGGGTCGGA
TCATCTCGAACGATGGCCTGATCCAGACGATCGGTGCGAATAACACTACA
ATTCAGGTCAATAACGGCGCCAGCATCACCAACAATGGCAACCTTGTTGC
CACGGGCGCTGGCTCTGAAGCAATCATTGCCGGCAATGATGCGATGATTG
GCAACACCGGCTTGATCGCAACCGACGGCGACGATGCGGTGGCGGTCACC
GTGGGCGCGGACAGCATGATCGACAACAGCGGCACGATCATGACCGAAGG
CGATGATGCCGATGCCATCGTCGCTGGCGACAATCTCGATCTCACCAATT
CCGGCACCATCGCGGCAACCGGGGCGGATGCGCGCGGGATCGAAACCGGC
GATGGTTTCATGCTGATGAATTCGGGGACGATCGAAGCGACTGATCGCGC
GATCAACGCTGGCGATGATGTTACCATCACCAACGTGGCAGGCGGCCTGA
TCAACACCACCGGCGATGCCGATACGATCCAGACCGGCGAGAACACGATC
ATCATCAACAATGGCACGATCAGCAACGAAGGTTTTGACACCAAGATCAT
CGATGCAGGTGACGGGCTGACCGTGACCAATAATGGCACGATCACCTCCG
ACTGGAAGGGGATCGAGGGTGAGGCCAATTTCACGCTGACCAACAATGCG
GGCGCTCTGATCTTCAGCGCCTTCGACGAAGCGGTGGAAGCCGATGGCCC
CGGCCTCGTGGTGGTCAATAACGGCGAAATCATCTCGCCCGAAGATGACG
CCATCGATGGCGATAGCGATGTGATGATCACCAACACCGGCCTTATTCAG
GGCGGGGAAAATGATGCGATTGAGCTGAACAACGGCACGATCATCAATTC
GGGTCGGATCATCTCG back to top
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