mRNA_H-fluviatilis_contig100025.66.1 (mRNA) Heribaudiella fluviatilis SAG_13_90
You are viewing an mRNA, more information available on the corresponding polypeptide page
Overview
Homology
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: D7G2M3_ECTSI (Catalytic, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2M3_ECTSI) HSP 1 Score: 136 bits (342), Expect = 1.060e-37 Identity = 76/124 (61.29%), Postives = 92/124 (74.19%), Query Frame = 1 Query: 40 MKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 MKHGR DLRA V GVVLQAPVSDR++ E+LP T GF+ EAR R G ELMP AA+ APIT +R++SL+T K +DDMFS+DL+ DERH RLGHMASVPTAAF+SG+D++VP Sbjct: 1 MKHGRSDLRAAVVGVVLQAPVSDREYLETLPSTEGFIEEARVRGGGG-------ELMPVAAD-QAPITAARFISLAT------KEGDDDMFSADLTADERHGRLGHMASVPTAAFLSGADQFVP 110
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A6A4LGS4_9ERIC (Uncharacterized protein (Fragment) n=1 Tax=Rhododendron williamsianum TaxID=262921 RepID=A0A6A4LGS4_9ERIC) HSP 1 Score: 124 bits (312), Expect = 6.720e-32 Identity = 72/137 (52.55%), Postives = 87/137 (63.50%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V+YM+ P RA VR +LQAPVSDR++R +LPETA + A E + GRV+ ELMP A DAPIT SRY SL + +DDMFSSDLS D+ RLGHM + P S +DEYVP Sbjct: 159 LGHSTGCQDIVYYMRTNAPCSRA-VRAAILQAPVSDREYRATLPETAAMIDLASEMIGDGRVS----ELMPREANPDAPITASRYHSLCAY------NGDDDMFSSDLSDDQLKMRLGHMTNTPCQVIFSMADEYVP 284
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A834GXN7_RHOSS (Uncharacterized protein n=1 Tax=Rhododendron simsii TaxID=118357 RepID=A0A834GXN7_RHOSS) HSP 1 Score: 122 bits (306), Expect = 5.950e-31 Identity = 71/137 (51.82%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V+YM+ P RA VR +LQAPVSDR++R +LPETA + A E + GRV+ ELMP A DAPIT RY SL + +DDMFSSDLS D+ RLGHM + P S +DEYVP Sbjct: 198 LGHSTGCQDIVYYMRTNAPCSRA-VRAAILQAPVSDREYRATLPETAAMIDLASEMIGDGRVS----ELMPREANPDAPITAFRYHSLCAY------NGDDDMFSSDLSDDQLKMRLGHMTNTPCQVIFSMADEYVP 323
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A7N2LVX1_QUELO (Uncharacterized protein n=3 Tax=Fagaceae TaxID=3503 RepID=A0A7N2LVX1_QUELO) HSP 1 Score: 119 bits (299), Expect = 6.450e-30 Identity = 69/137 (50.36%), Postives = 86/137 (62.77%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V YM+ RA VR +LQAPVSDR++R +LPETA + A ++ GR G ELMPT A++ +PIT SRY SL + DDMFSSDLS D+ RLGHM++ P S +DEYVP Sbjct: 164 LGHSTGCQDIVHYMRTNAACSRA-VRAAILQAPVSDREYRATLPETAAMIDLASTMISEGR----GSELMPTEADSGSPITASRYHSLCAYMGD------DDMFSSDLSDDQLRMRLGHMSNTPCQVIFSMADEYVP 289
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A2P5FWX9_TREOI (Alpha/Beta hydrolase fold containing protein n=7 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5FWX9_TREOI) HSP 1 Score: 118 bits (296), Expect = 2.000e-29 Identity = 69/137 (50.36%), Postives = 84/137 (61.31%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V YM+ RA VR +LQAPVSDR++R +LPETAG + A ++ G G ELMP A+ APIT +RY SL + DDMFSSDLS D+ RLGHM++ P S SDEYVP Sbjct: 171 LGHSTGCQDIVHYMRTNAACSRA-VRAAILQAPVSDREYRATLPETAGMIDMASSMISEG----CGSELMPREADPTAPITANRYHSLCAYMGD------DDMFSSDLSDDQLRMRLGHMSNTPCQVIFSMSDEYVP 296
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A8B7C3J2_PHODC (UPF0613 protein PB24D3.06c-like isoform X1 n=2 Tax=Phoenix dactylifera TaxID=42345 RepID=A0A8B7C3J2_PHODC) HSP 1 Score: 118 bits (295), Expect = 2.410e-29 Identity = 71/137 (51.82%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQ V YM+ RA VRGV+LQAPVSDR++R +LPETA + A + ++ GR G ELMP A DAPIT RY SL + DDMFSSDLS D+ RLGHM+S P S +DEYVP Sbjct: 153 LGHSTGCQGIVHYMRTNFACSRA-VRGVILQAPVSDREYRATLPETAAMIDLAAKMISEGR----GMELMPREANPDAPITAYRYHSLCAYMGD------DDMFSSDLSEDQLRLRLGHMSSTPCQVISSLADEYVP 278
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A7J0GTC3_9ERIC (Alpha/beta-Hydrolases superfamily protein n=1 Tax=Actinidia rufa TaxID=165716 RepID=A0A7J0GTC3_9ERIC) HSP 1 Score: 114 bits (285), Expect = 4.060e-29 Identity = 67/137 (48.91%), Postives = 83/137 (60.58%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V+Y++ RA V +LQAPVSDR+++ +LPETA + A + ++ GR ELMP A DAPIT SRY SL E DDMFSSDLS D+ RLGHM++ P S DEYVP Sbjct: 28 LGHSTGCQDIVYYLRTNAACSRA-VCAAILQAPVSDREYKATLPETAAMIDLASKMISEGR----SSELMPREANPDAPITASRYHSLCAYNGE------DDMFSSDLSDDQLKMRLGHMSNTPCQVIFSMGDEYVP 153
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A1S3AX38_CUCME (UPF0613 protein PB24D3.06c n=8 Tax=Cucurbitaceae TaxID=3650 RepID=A0A1S3AX38_CUCME) HSP 1 Score: 117 bits (294), Expect = 4.260e-29 Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V YM+ RA VRG +LQAPVSDR++R +LPETA + A ++ GR G +LMP A+ +PIT +RY SL + + DDMFSSDLS D+ RLGHMA+ P S DEYVP Sbjct: 176 LGHSTGCQDIVHYMRTNAACSRA-VRGAILQAPVSDREYRATLPETAAMIDLASTMISEGR----GLDLMPREADPSSPITATRYYSLCSYMGD------DDMFSSDLSDDQLKLRLGHMANTPCQVIFSMGDEYVP 301
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A5N5HIH1_9ROSA (Uncharacterized protein n=9 Tax=Maleae TaxID=721813 RepID=A0A5N5HIH1_9ROSA) HSP 1 Score: 117 bits (293), Expect = 4.410e-29 Identity = 68/137 (49.64%), Postives = 85/137 (62.04%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V YM+ RA VR +LQAPVSDR++R +LPETA + A ++ GR G ELMP+AA+ APIT RY SL + +DDMFSSDL+ D+ RLGHM + P S +DEYVP Sbjct: 158 LGHSTGCQDVVHYMRTNAACSRA-VRAAILQAPVSDREYRATLPETAAMIDLASTMISEGR----GSELMPSAADPGAPITAYRYHSLCAY------NGDDDMFSSDLTDDQLRLRLGHMTNTPCQVIFSMADEYVP 283
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Match: A0A2R6PK25_ACTCC (UPF0613 protein like n=3 Tax=Actinidia TaxID=3624 RepID=A0A2R6PK25_ACTCC) HSP 1 Score: 117 bits (293), Expect = 4.490e-29 Identity = 68/137 (49.64%), Postives = 84/137 (61.31%), Query Frame = 1 Query: 1 IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVREARERLAAGRVAVAGKELMPTAAEADAPITVSRYLSLSTQASERYKHPNDDMFSSDLSFDERHFRLGHMASVPTAAFISGSDEYVP 411 +GHSTGCQD V+Y++ RA VR +LQAPVSDR+++ +LPETA + A + ++ GR ELMP A DAPIT SRY SL E DDMFSSDLS D+ RLGHM++ P S DEYVP Sbjct: 159 LGHSTGCQDIVYYLRTNAACSRA-VRAAILQAPVSDREYKATLPETAAMIDLASKMISEGR----SSELMPREANPDAPITASRYHSLCAYNGE------DDMFSSDLSDDQLKMRLGHMSNTPCQVIFSMGDEYVP 284 The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100025.66.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25 ZOOMx 1POSITION0
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-fluviatilis_contig100025.66.1 >prot_H-fluviatilis_contig100025.66.1 ID=prot_H-fluviatilis_contig100025.66.1|Name=mRNA_H-fluviatilis_contig100025.66.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=137bp IGHSTGCQDAVFYMKHGRPDLRARVRGVVLQAPVSDRDWRESLPETAGFVback to top mRNA from alignment at H-fluviatilis_contig100025:29..862- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-fluviatilis_contig100025.66.1 ID=mRNA_H-fluviatilis_contig100025.66.1|Name=mRNA_H-fluviatilis_contig100025.66.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=834bp|location=Sequence derived from alignment at H-fluviatilis_contig100025:29..862- (Heribaudiella fluviatilis SAG_13_90)back to top Coding sequence (CDS) from alignment at H-fluviatilis_contig100025:29..862- >mRNA_H-fluviatilis_contig100025.66.1 ID=mRNA_H-fluviatilis_contig100025.66.1|Name=mRNA_H-fluviatilis_contig100025.66.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=822bp|location=Sequence derived from alignment at H-fluviatilis_contig100025:29..862- (Heribaudiella fluviatilis SAG_13_90)back to top |