mRNA_H-fluviatilis_contig100.58.1 (mRNA) Heribaudiella fluviatilis SAG_13_90

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-fluviatilis_contig100.58.1
Unique NamemRNA_H-fluviatilis_contig100.58.1
TypemRNA
OrganismHeribaudiella fluviatilis SAG_13_90 (Heribaudiella fluviatilis SAG_13_90)
Homology
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BLAST of mRNA_H-fluviatilis_contig100.58.1 vs. uniprot
Match: D8LPD1_ECTSI (EsV-1-100 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPD1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 8.670e-20
Identity = 41/114 (35.96%), Postives = 62/114 (54.39%), Query Frame = 1 
Query:    4 EEQNIRRAKLVESLQTQGLQLRYDSRLCYCYIRGELGEDWDLERIVRECGTMHWLFNYTNYPIRCRQAFEYFST--FSNCSNRTFEYVKQNVHPHIKAETIMGRGGLPDRRPWL 339
            +++  R+  L + L   GL LRYDSRLC CYI G    +W   ++ +EC  MHWL N+T+Y  RC  A    S   + +      +Y+K+ V+P IK + +    G P+  PW+
Sbjct:    6 QQRGARKKNLEQELSNLGLVLRYDSRLCSCYINGITSPEWTASKVAKECALMHWLHNFTDYEKRCAVAATQLSRKMWFHSGQNFADYMKRRVYPAIKEDILKENEGGPEEWPWV 119
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BLAST of mRNA_H-fluviatilis_contig100.58.1 vs. uniprot
Match: Q8QNH8_ESV1K (EsV-1-100 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QNH8_ESV1K)

HSP 1 Score: 86.3 bits (212), Expect = 2.460e-19
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = 1 
Query:    4 EEQNIRRAKLVESLQTQGLQLRYDSRLCYCYIRGELGEDWDLERIVRECGTMHWLFNYTNYPIRCRQAFEYFST--FSNCSNRTFEYVKQNVHPHIKAETIMGRGGLPDRRPWL 339
            ++++ R+  L E L    L LRYDSRLC CYI G    +W   ++ +EC  MHWL N+T+Y  RC +A    S   + +      +Y+K+ V+P IK   +    G P   PW+
Sbjct:    6 QQRDARKKNLEEELSNLNLVLRYDSRLCSCYINGITSTEWTASKVAKECAIMHWLHNFTDYEERCVEAAAQLSRKMWFHSGQNFADYMKRRVYPSIKQSILNENAGGPKEWPWV 119
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BLAST of mRNA_H-fluviatilis_contig100.58.1 vs. uniprot
Match: A0A835Z809_9STRA (Uncharacterized protein n=2 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z809_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 2.920e-11
Identity = 43/111 (38.74%), Postives = 59/111 (53.15%), Query Frame = 1 
Query:   19 RRAKLVESLQTQGLQLRYDSRLCYCYIRGELGEDWDLERIVRECGTMHWLFNYTNYPIRCRQAFEYFSTFSNCSNRTFE----YVKQNVHPHIKAETIMGRGGLPDRRPWL 339
            RRA L  +L +QGL +R DS LC  YI G L   +  E I   CG   +L+ YT+Y +RC       +     S  ++E    Y K++  P IKAET+  + GLP+  PWL
Sbjct:    9 RRAVLEAALASQGLTIRPDSGLCRAYIHGMLEAYYTPELISFICGLHKYLYEYTDYGLRCSDIIPRLARMLAPSMGSYEAALTYAKKHEVPIIKAETL-SKYGLPEIWPWL 118
The following BLAST results are available for this feature:
BLAST of mRNA_H-fluviatilis_contig100.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LPD1_ECTSI8.670e-2035.96EsV-1-100 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Q8QNH8_ESV1K2.460e-1935.96EsV-1-100 n=1 Tax=Ectocarpus siliculosus virus 1 (... [more]
A0A835Z809_9STRA2.920e-1138.74Uncharacterized protein n=2 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-fluviatilis_contig100contigH-fluviatilis_contig100:30374..30718 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Heribaudiella fluviatilis SAG_13_902021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-100
Ec32 orthologEc-06_005810.1
Exons1
Model size345
Cds size345
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.173719-CDS-H-fluviatilis_contig100:30373..307181622928995.173719-CDS-H-fluviatilis_contig100:30373..30718Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100 30374..30718 +
1691135143.041227-CDS-H-fluviatilis_contig100:30373..307181691135143.041227-CDS-H-fluviatilis_contig100:30373..30718Heribaudiella fluviatilis SAG_13_90CDSH-fluviatilis_contig100 30374..30718 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-fluviatilis_contig100.58.1prot_H-fluviatilis_contig100.58.1Heribaudiella fluviatilis SAG_13_90polypeptideH-fluviatilis_contig100 30374..30718 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-fluviatilis_contig100.58.1

>prot_H-fluviatilis_contig100.58.1 ID=prot_H-fluviatilis_contig100.58.1|Name=mRNA_H-fluviatilis_contig100.58.1|organism=Heribaudiella fluviatilis SAG_13_90|type=polypeptide|length=115bp
MEEQNIRRAKLVESLQTQGLQLRYDSRLCYCYIRGELGEDWDLERIVREC
GTMHWLFNYTNYPIRCRQAFEYFSTFSNCSNRTFEYVKQNVHPHIKAETI
MGRGGLPDRRPWLPP
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mRNA from alignment at H-fluviatilis_contig100:30374..30718+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-fluviatilis_contig100.58.1 ID=mRNA_H-fluviatilis_contig100.58.1|Name=mRNA_H-fluviatilis_contig100.58.1|organism=Heribaudiella fluviatilis SAG_13_90|type=mRNA|length=345bp|location=Sequence derived from alignment at H-fluviatilis_contig100:30374..30718+ (Heribaudiella fluviatilis SAG_13_90)
ATGGAGGAGCAAAACATTCGTCGAGCCAAACTCGTAGAGTCCCTGCAGAC
CCAGGGGCTCCAACTCAGATACGATAGCAGACTGTGTTACTGTTATATAC
GGGGAGAGCTCGGAGAGGACTGGGACTTGGAAAGAATCGTGCGAGAATGT
GGCACGATGCACTGGCTGTTCAACTACACCAATTACCCGATCAGGTGTAG
ACAAGCATTCGAATATTTCTCGACATTTTCGAATTGCAGCAATAGAACTT
TCGAGTATGTCAAGCAGAACGTACATCCACACATAAAGGCTGAAACAATA
ATGGGGCGCGGAGGTCTACCCGACAGAAGGCCATGGTTGCCCCCT
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Coding sequence (CDS) from alignment at H-fluviatilis_contig100:30374..30718+

>mRNA_H-fluviatilis_contig100.58.1 ID=mRNA_H-fluviatilis_contig100.58.1|Name=mRNA_H-fluviatilis_contig100.58.1|organism=Heribaudiella fluviatilis SAG_13_90|type=CDS|length=690bp|location=Sequence derived from alignment at H-fluviatilis_contig100:30374..30718+ (Heribaudiella fluviatilis SAG_13_90)
ATGGAGGAGCAAAACATTCGTCGAGCCAAACTCGTAGAGTCCCTGCAGAC
CCAGGGGCTCCAACTCAGATACGATAGCAGACTGTGTTACTGTTATATAC
GGGGAGAGCTCGGAGAGGACTGGGACTTGGAAAGAATCGTGCGAGAATGT
GGCACGATGCACTGGCTGTTCAACTACACCAATTACCCGATCAGGTGTAG
ACAAGCATTCGAATATTTCTCGACATTTTCGAATTGCAGCAATAGAACTT
TCGAGTATGTCAAGCAGAACGTACATCCACACATAAAGGCTGAAACAATA
ATGGGGCGCGGAGGTCTACCCGACAGAAGGCCATGGTTGCCCCCTATGGA
GGAGCAAAACATTCGTCGAGCCAAACTCGTAGAGTCCCTGCAGACCCAGG
GGCTCCAACTCAGATACGATAGCAGACTGTGTTACTGTTATATACGGGGA
GAGCTCGGAGAGGACTGGGACTTGGAAAGAATCGTGCGAGAATGTGGCAC
GATGCACTGGCTGTTCAACTACACCAATTACCCGATCAGGTGTAGACAAG
CATTCGAATATTTCTCGACATTTTCGAATTGCAGCAATAGAACTTTCGAG
TATGTCAAGCAGAACGTACATCCACACATAAAGGCTGAAACAATAATGGG
GCGCGGAGGTCTACCCGACAGAAGGCCATGGTTGCCCCCT
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