mRNA_H-canaliculatus_M_contigs9991.3.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9991.3.1
Unique NamemRNA_H-canaliculatus_M_contigs9991.3.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9991.3.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9991contigH-canaliculatus_M_contigs9991:1800..2458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Model size661
Hectar predicted targeting categoryother localisation
Exons1
Cds size333
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854238.8065593-UTR-H-canaliculatus_M_contigs9991:1799..21251696854238.8065593-UTR-H-canaliculatus_M_contigs9991:1799..2125Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs9991 1800..2125 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854238.8188-CDS-H-canaliculatus_M_contigs9991:2125..24581696854238.8188-CDS-H-canaliculatus_M_contigs9991:2125..2458Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9991 2126..2458 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9991.3.1prot_H-canaliculatus_M_contigs9991.3.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9991 2126..2458 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9991.3.1

>prot_H-canaliculatus_M_contigs9991.3.1 ID=prot_H-canaliculatus_M_contigs9991.3.1|Name=mRNA_H-canaliculatus_M_contigs9991.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=111bp
PRCLRCRLCSVHVGWYDVGSGRSFEFESGGVIVKPARRWGSCWCIHVERE
GGALLTTGQPRARVCTLKRTRGERRERLEIWWMVPCMKHSEDGRTALSWV
GFGRGMVWSV*
back to top

mRNA from alignment at H-canaliculatus_M_contigs9991:1800..2458-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9991.3.1 ID=mRNA_H-canaliculatus_M_contigs9991.3.1|Name=mRNA_H-canaliculatus_M_contigs9991.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=659bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9991:1800..2458- (Hapterophycus canaliculatus Oshoro7m male)
CCGAGATGTCTCCGGTGCCGTTTGTGTTCCGTTCATGTGGGATGGTATGA
CGTTGGCTCAGGCAGGTCGTTCGAGTTCGAATCGGGTGGAGTAATCGTAA
AGCCTGCTCGGCGATGGGGCAGCTGTTGGTGTATTCATGTGGAGCGGGAG
GGAGGAGCCCTCTTGACGACTGGGCAGCCGCGGGCACGTGTATGTACACT
AAAACGTACACGAGGAGAGCGAAGAGAGAGATTGGAGATTTGGTGGATGG
TGCCATGCATGAAGCACTCAGAAGACGGCAGGACCGCTTTGTCTTGGGTT
GGGTTTGGCAGAGGCATGGTTTGGAGTGTTTGATGTGTTGATGTGAGCCT
CACTTACGAGTTCAGACTTTTGGTTACCAGTAGCTTGTTTTTAAGGCGGA
GCTGCACCTATCCTAGAGGGTTGCTGCTCATTGATTGAGCCCTGCCTACG
GTGCGCTTAGCGTGTTGTCCGTTGATGTCTCGCCAAAGGTATCAGCTGGT
TTTCCACGTTTCGAAACACAGCAGAGCGATGTATCCTCGCTTGCCCCACG
AAACGTTAATCTCTCCTCTGACCAAGAGACACCGAGACTCAAGAGCGGGT
TTGTGTTTGTTTACTCATCTATGCACTCATTCATTCACCAACGTTATTTT
TCGCGTTCA
back to top

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9991:1800..2458-

>mRNA_H-canaliculatus_M_contigs9991.3.1 ID=mRNA_H-canaliculatus_M_contigs9991.3.1|Name=mRNA_H-canaliculatus_M_contigs9991.3.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=333bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9991:1800..2458- (Hapterophycus canaliculatus Oshoro7m male)
CCGAGATGTCTCCGGTGCCGTTTGTGTTCCGTTCATGTGGGATGGTATGA
CGTTGGCTCAGGCAGGTCGTTCGAGTTCGAATCGGGTGGAGTAATCGTAA
AGCCTGCTCGGCGATGGGGCAGCTGTTGGTGTATTCATGTGGAGCGGGAG
GGAGGAGCCCTCTTGACGACTGGGCAGCCGCGGGCACGTGTATGTACACT
AAAACGTACACGAGGAGAGCGAAGAGAGAGATTGGAGATTTGGTGGATGG
TGCCATGCATGAAGCACTCAGAAGACGGCAGGACCGCTTTGTCTTGGGTT
GGGTTTGGCAGAGGCATGGTTTGGAGTGTTTGA
back to top