mRNA_H-canaliculatus_M_contigs9569.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs9569.1.1
Unique NamemRNA_H-canaliculatus_M_contigs9569.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs9569.1.1 vs.
Match: Similar (to metal response element-binding transcription factor-1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M8_ECTSI)

HSP 1 Score: 349 bits (896), Expect = 8.500e-113
Identity = 225/445 (50.56%), Postives = 243/445 (54.61%), Query Frame = 1 
Query:    1 CSKAFATKDKLKRHALSHA------------------------------RRKAGLSTSVGNAARREAEARQDAAAFAAKAAAEGISLELPPEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWGHSCPTCGRNFLDNYHLKRHIKAIHEGPRPYKCEHPVAAPAAAGPFVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----GGRTQEG----------RAHGVCGAAFSKKWQLREHLFAEHGQTKFNSRQHRCPHAGCGRVFDRPSKLAAHTKAHEARFVXXXXXXXXXXXXXXGLNLHLKEEHPFRCGVCDKRFDREDKMQIHQGTHNRAGDGDFIRPYHCNVRGCGKSFTEKRNLNAHRRTQHTEGGRKRFRXXXXXXXXXXXXXXXXXXXXXREHEIAS 1203
            C K+F+   KL RHA +H                               RRKAGLSTSVG+AARREAE RQ AAAF A+AAA G+SLE P                                                W  +C  CGRNFLDNYHL+RHIKAIHE PRPY C+HPV  P    P  A                                                        GG T+ G          R  GVCGA+F+KKWQLREHLFAEHGQ+KFNSRQHRC HAGCGR FDRPSKLAAH K H+ARFV              GLNLHLKE+HPFRCGVCDK FDREDKMQIHQ TH RAGDGDFIRPYHCNVRGCGK+FTEKRNLNAHRRT HTEGGRKRFRXXXXXXXXXXXXXXXX     REH+ +S
Sbjct:   82 CGKSFSKACKLARHAATHTGEKPFVCSEAGXXXXXXXXXXXXXXXXXXXRRKAGLSTSVGDAARREAETRQRAAAFVAEAAAAGVSLEEP--GAGGIGAPRRVLPLMKTTTAPLLEASRLERERAVNGSGSGGGGAQGWKFTCGNCGRNFLDNYHLQRHIKAIHEAPRPYTCDHPVVVPPPTAPSAASVADGTAAAFATAFPGGSRARCERQGEEVVAEARGEAKEGKDVSRAKGSVGGVEAEGGATERGLQQQPQQKQQRVLGVCGASFAKKWQLREHLFAEHGQSKFNSRQHRCSHAGCGRSFDRPSKLAAHEKTHKARFVCQFDGCGAAFVLASGLNLHLKEKHPFRCGVCDKVFDREDKMQIHQATHARAGDGDFIRPYHCNVRGCGKAFTEKRNLNAHRRTAHTEGGRKRFRXXXXXXXXXXXXXXXXVKHVKREHQSSS 524
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BLAST of mRNA_H-canaliculatus_M_contigs9569.1.1 vs.
Match: Uncharacterized (protein n=6 Tax=Cotesia TaxID=32390 RepID=A0A8J5UXY0_9HYME)

HSP 1 Score: 58.2 bits (139), Expect = 2.020e-5
Identity = 30/82 (36.59%), Postives = 44/82 (53.66%), Query Frame = 1 
Query:  883 LNLHLKEEHP-----FRCGVCDKRFDREDKMQIHQGTHNRAGDGDFIRPYHCNVRGCGKSFTEKRNLNAHRRTQHTEGGRKR 1113
            L  H+ E+H      F+CGVCDK +++   + +H+ TH +       +PY C++  CGKSF    NL  H+RT      RKR
Sbjct:  507 LQNHISEKHSGLQMLFKCGVCDKVYEKWSSLDVHEATHRQD------KPYLCDL--CGKSFKHSNNLRGHKRTHLDVAKRKR 580
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs9569.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Similar8.500e-11350.56to metal response element-binding transcription fa... [more]
Uncharacterized2.020e-536.59protein n=6 Tax=Cotesia TaxID=32390 RepID=A0A8J5UX... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs9569contigH-canaliculatus_M_contigs9569:2037..4673 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog176275.XP_008594548.1
PFAMsGAGA,zf-C2H2
Model size1203
Max annot lvl4751|Fungi
KEGG koko:K09191
Hectar predicted targeting categoryother localisation
GOsGO:0000182,GO:0000995,GO:0001016,GO:0001030,GO:0001067,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0005488,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006359,GO:0006383,GO:0006384,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0016070,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0031323,GO:0031326,GO:0032774,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043565,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0046483,GO:0050789,GO:0050794,GO:0051171,GO:0051252,GO:0060255,GO:0065007,GO:0071704,GO:0080084,GO:0080090,GO:0090304,GO:0097159,GO:0097659,GO:0140110,GO:0140223,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1903506,GO:1990837,GO:2000112,GO:2001141
Exons5
Evalue2.03e-07
EggNOG OGsKOG1721@1|root,KOG1721@2759|Eukaryota,39CGA@33154|Opisthokonta,3NVT7@4751|Fungi,3QRUF@4890|Ascomycota,214K6@147550|Sordariomycetes,3TGVD@5125|Hypocreales
Ec32 ortholog descriptionZinc finger C2H2-type/integrase DNA-binding domain
Ec32 orthologEc-24_001700.1
DescriptionTranscription factor
Cds size1203
COG categoryS
BRITEko00000,ko03000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854215.6710682-CDS-H-canaliculatus_M_contigs9569:2036..21411696854215.6710682-CDS-H-canaliculatus_M_contigs9569:2036..2141Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9569 2037..2141 -
1696854215.6875894-CDS-H-canaliculatus_M_contigs9569:2642..28231696854215.6875894-CDS-H-canaliculatus_M_contigs9569:2642..2823Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9569 2643..2823 -
1696854215.6992474-CDS-H-canaliculatus_M_contigs9569:2935..31211696854215.6992474-CDS-H-canaliculatus_M_contigs9569:2935..3121Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9569 2936..3121 -
1696854215.7103693-CDS-H-canaliculatus_M_contigs9569:3726..39221696854215.7103693-CDS-H-canaliculatus_M_contigs9569:3726..3922Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9569 3727..3922 -
1696854215.721636-CDS-H-canaliculatus_M_contigs9569:4138..46731696854215.721636-CDS-H-canaliculatus_M_contigs9569:4138..4673Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs9569 4139..4673 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs9569.1.1prot_H-canaliculatus_M_contigs9569.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs9569 2037..4673 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs9569.1.1

>prot_H-canaliculatus_M_contigs9569.1.1 ID=prot_H-canaliculatus_M_contigs9569.1.1|Name=mRNA_H-canaliculatus_M_contigs9569.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=401bp
CSKAFATKDKLKRHALSHARRKAGLSTSVGNAARREAEARQDAAAFAAKA
AAEGISLELPPEAAATMMMTATPPLLQASRMEREQASSRGSAGGGTRGGG
GGGGSGGGWGHSCPTCGRNFLDNYHLKRHIKAIHEGPRPYKCEHPVAAPA
AAGPFVAAAAVTAAADAAAAAAPGAASPDAAREEDDGPAGGRTIARGGGA
GALVGAAAAGGRTQEGRAHGVCGAAFSKKWQLREHLFAEHGQTKFNSRQH
RCPHAGCGRVFDRPSKLAAHTKAHEARFVCEFEGCGAAFVLASGLNLHLK
EEHPFRCGVCDKRFDREDKMQIHQGTHNRAGDGDFIRPYHCNVRGCGKSF
TEKRNLNAHRRTQHTEGGRKRFRCEVSGCAMAFAHRHTLVKHVKREHEIA
S
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mRNA from alignment at H-canaliculatus_M_contigs9569:2037..4673-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs9569.1.1 ID=mRNA_H-canaliculatus_M_contigs9569.1.1|Name=mRNA_H-canaliculatus_M_contigs9569.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2637bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9569:2037..4673- (Hapterophycus canaliculatus Oshoro7m male)
TGCTCGAAAGCCTTCGCGACCAAGGACAAGCTCAAGCGGCACGCCCTCTC
CCACGCGCGAAGAAAGGCCGGCCTCTCAACATCCGTGGGCAACGCCGCCC
GCCGGGAGGCCGAGGCTCGGCAGGACGCCGCCGCGTTCGCGGCTAAGGCT
GCCGCAGAGGGGATCTCGCTCGAGCTGCCACCGGAGGCGGCGGCGACGAT
GATGATGACGGCGACGCCACCACTATTGCAGGCATCGAGGATGGAGAGAG
AGCAAGCATCGAGCCGAGGCAGTGCGGGCGGTGGGACTCGTGGCGGCGGC
GGCGGCGGCGGCAGCGGCGGGGGCTGGGGGCACTCCTGCCCGACGTGTGG
GAGAAACTTCCTGGACAACTACCACCTCAAGCGCCACATCAAGGCCATTC
ACGAAGGCCCCCGTCCGTACAAGTGCGAACACCCCGTGGCTGCTCCCGCA
GCCGCTGGCCCTTTCGTCGCCGCCGCCGCCGTCACCGCTGCTGCTGATGC
GGCTGCGGCAGCAGCTCCCGGGGCTGCTTCTCCGGGTTCTCCCTCCCCCG
CCGCTGCTGCCCCTTCCGCTGCCTCTACGCCTCCCCCCGCCAAGGCCCTC
CGAAATACAGCCGTCGGGGTTGCGGCTGGCGCTGACCTTAGTTCTGCCGA
GTCCGAGAGCAATCGGGAAGAACCTGACGCCGCTAGACCAGGACCAGCAG
AGGATAGGGTCACCGCGCTGGAAGGAAGCGGGGGACCTGCGCACAAGGGA
GATGCCGCACGCGAGGAAGATGATGGACCAGCAGGAGGGAGAACTATCGC
ACGGGGAGGGGGCGCGGGAGCCCTGGTGGGAGCAGCTGCGGCCGGAGGCC
GTACGCAGGAGGGCCGGGCGCACGGGGTGTGCGGAGCGGCGTTTTCGAAG
AAGTGGCAGCTTCGGGAGCATCTCTTCGCGGAGCACGGGCAGACCAAGTG
AGGACGGGGGGGATGCCCGTTTTCCCGTCGCGTCGGCTTTGCTCTCCTTT
TTCCCGTCCTTTTTCTTCTGTGTGATTTTTGGGCCTATCCTGCGCTAGTC
TCCCACTTCGTTTGTTCACCACGGCGGCGGTTATTCCGTCGCTTTTGAGG
CCAAAGCGCCGCACAAACAGATCCCGCTTGCCTTGTTGCCTGCCGACATC
GGCTTGGTCTCTCGGAGATACCTCACCAATGTTCGGAGATTTCTCGCCGA
TGCCCAGCAGCCCGAAAGTAGGAAAAAGAAGCTGGCGCGGAAGGGCGCTC
GCCAGCAAAGGGGTGTGGCGTGGGGCCTCTTGTGCCGTGGTGCTGTCTCA
CGAAGGGGCTCTCGCTGATGGTCCCCGGATACTCACCATCTTTTCGCTCG
GTGCCTTTCGAACGAAACACACACCAATAAGACCGCTGCTGCCACATGGG
TGTAGCACCGGTTCGGCCTTTCGTGCCTAGACAGAGGTGCCCAGAGCGTC
GTGGCGCACCCCGTCGCCGCTGTGAGCTGTTGGGAGGCCTGGAAATCGGG
TGCGTGACGGTCCCTTCCTCGCCCTCGTTTTCGGTTCTCGGGGGTTCCGC
AGGTTCAACAGCAGGCAGCACCGGTGCCCCCACGCGGGGTGCGGGCGGGT
TTTCGATCGCCCGAGCAAGCTGGCCGCCCACACGAAGGCCCACGAAGCGC
GCTTCGTGTGCGAGTTCGAGGGGTGCGGAGCGGCCTTCGTTCTCGCGTCT
GGCCTCAACCTTCACCTCAAGGAAGAGCACCCTTTCAGGTGGGGCCACCG
CTCGGTTGCTGCTGTAATCCGCTCGAAGTTAGTTGTTGGCGAGACGCAGC
AAACGCCGGCGCCGCACTCACACGAGCCCCTCTCAACGAAACCACATCAG
GTGCGGCGTGTGCGACAAACGTTTTGATCGGGAGGACAAGATGCAGATCC
ACCAGGGGACTCACAACAGGGCCGGGGATGGCGACTTCATCCGGCCTTAC
CACTGCAACGTGCGGGGCTGCGGGAAGTCTTTCACAGAGAAGAGGAATCT
CAACGCTCACCGGAGAACCCAGCACACTGAGGTATTCGCAGGCGTTTTTC
AGAGTCGTAAATGACAAGGGGAAAAGGTGCTTGGTTGTTCCCTGTTCGAA
AGATCAGGCTTCGGAAAGCAGGGTTGCGGCATAGTGTCCGACCTGATTCG
TACGTTGCTTGAGGCAATCATGACGGTTATTGACTTGGCGCAAGTCTAGA
GCACTGCCCGGTTCGCAGCATCTGCCTTGGACACCCCTTGGGCATCCCGG
TGGGATTCTGTTTTTGTCTTAGGGGATGTCCCTGCGAGGTCTCCTGGATG
CTTTGCGACGTCACGCGTCGACCAGACCCAGATGTTTCGCCCACGCTCTC
GACTGCCACACCCACCACGCTGGCCGTACTTGCGATCAAGCTGTCGTAGC
CCTTTTCTTGCCTCCGCTCATTCACCAGCGAGATAGCTTCCACCATGTCC
CCTTTCGCGTCTTCTCAATACTTGCTTGAATTTATGAAGTTGTCCCCTCT
CTCCCCTGCCTGCCGACAACCTGGTCCACCAGGGTGGGCGCAAGCGATTC
CGGTGCGAAGTTAGCGGCTGCGCCATGGCCTTCGCCCATCGACACACCCT
CGTCAAGCACGTCAAGCGGGAGCACGAAATCGCGTCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs9569:2037..4673-

>mRNA_H-canaliculatus_M_contigs9569.1.1 ID=mRNA_H-canaliculatus_M_contigs9569.1.1|Name=mRNA_H-canaliculatus_M_contigs9569.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1203bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs9569:2037..4673- (Hapterophycus canaliculatus Oshoro7m male)
TGCTCGAAAGCCTTCGCGACCAAGGACAAGCTCAAGCGGCACGCCCTCTC
CCACGCGCGAAGAAAGGCCGGCCTCTCAACATCCGTGGGCAACGCCGCCC
GCCGGGAGGCCGAGGCTCGGCAGGACGCCGCCGCGTTCGCGGCTAAGGCT
GCCGCAGAGGGGATCTCGCTCGAGCTGCCACCGGAGGCGGCGGCGACGAT
GATGATGACGGCGACGCCACCACTATTGCAGGCATCGAGGATGGAGAGAG
AGCAAGCATCGAGCCGAGGCAGTGCGGGCGGTGGGACTCGTGGCGGCGGC
GGCGGCGGCGGCAGCGGCGGGGGCTGGGGGCACTCCTGCCCGACGTGTGG
GAGAAACTTCCTGGACAACTACCACCTCAAGCGCCACATCAAGGCCATTC
ACGAAGGCCCCCGTCCGTACAAGTGCGAACACCCCGTGGCTGCTCCCGCA
GCCGCTGGCCCTTTCGTCGCCGCCGCCGCCGTCACCGCTGCTGCTGATGC
GGCTGCGGCAGCAGCTCCCGGGGCTGCTTCTCCGGATGCCGCACGCGAGG
AAGATGATGGACCAGCAGGAGGGAGAACTATCGCACGGGGAGGGGGCGCG
GGAGCCCTGGTGGGAGCAGCTGCGGCCGGAGGCCGTACGCAGGAGGGCCG
GGCGCACGGGGTGTGCGGAGCGGCGTTTTCGAAGAAGTGGCAGCTTCGGG
AGCATCTCTTCGCGGAGCACGGGCAGACCAAGTTCAACAGCAGGCAGCAC
CGGTGCCCCCACGCGGGGTGCGGGCGGGTTTTCGATCGCCCGAGCAAGCT
GGCCGCCCACACGAAGGCCCACGAAGCGCGCTTCGTGTGCGAGTTCGAGG
GGTGCGGAGCGGCCTTCGTTCTCGCGTCTGGCCTCAACCTTCACCTCAAG
GAAGAGCACCCTTTCAGGTGCGGCGTGTGCGACAAACGTTTTGATCGGGA
GGACAAGATGCAGATCCACCAGGGGACTCACAACAGGGCCGGGGATGGCG
ACTTCATCCGGCCTTACCACTGCAACGTGCGGGGCTGCGGGAAGTCTTTC
ACAGAGAAGAGGAATCTCAACGCTCACCGGAGAACCCAGCACACTGAGGG
TGGGCGCAAGCGATTCCGGTGCGAAGTTAGCGGCTGCGCCATGGCCTTCG
CCCATCGACACACCCTCGTCAAGCACGTCAAGCGGGAGCACGAAATCGCG
TCC
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