mRNA_H-canaliculatus_M_contigs8876.1.2 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8876.1.2
Unique NamemRNA_H-canaliculatus_M_contigs8876.1.2
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FHG3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 2.940e-36
Identity = 62/65 (95.38%), Postives = 62/65 (95.38%), Query Frame = 1 
Query:    1 VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEE 195
            VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGV IGLKKGKKA P EEE
Sbjct:   71 VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVVIGLKKGKKAAPVEEE 135
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=2696291 RepID=B8CB96_THAPS)

HSP 1 Score: 107 bits (268), Expect = 7.180e-28
Identity = 51/64 (79.69%), Postives = 56/64 (87.50%), Query Frame = 1 
Query:    1 VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEE 192
            VCTRK R+LDVVYNASNNELVRTKTLVK AIV+VDAHPFK WYE+HYGV IG+KKG+ A   EE
Sbjct:   71 VCTRKVRVLDVVYNASNNELVRTKTLVKGAIVLVDAHPFKSWYESHYGVKIGIKKGQAAAEEEE 134
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z304_TRICV)

HSP 1 Score: 106 bits (265), Expect = 2.140e-27
Identity = 51/64 (79.69%), Postives = 55/64 (85.94%), Query Frame = 1 
Query:    1 VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEE 192
            VCTRK RILDV YNASNNELVRTKTLVK AIV++DAHPFK WYE HYGV IG+KKG+KA   EE
Sbjct:   71 VCTRKVRILDVTYNASNNELVRTKTLVKGAIVLIDAHPFKEWYEAHYGVKIGVKKGQKAHADEE 134
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8-like n=1 Tax=Sinocyclocheilus rhinocerous TaxID=307959 RepID=UPI0007B83060)

HSP 1 Score: 102 bits (254), Expect = 1.940e-26
Identity = 47/65 (72.31%), Postives = 54/65 (83.08%), Query Frame = 1 
Query:    4 CTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEEV 198
            CTRKTRI+DVVYNASNNELVRTKTLVKN IV+VD+ PF+ WYE HY + +G KKG K  P EEE+
Sbjct:    4 CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTPFRQWYEAHYAIPLGRKKGAKLTPEEEEI 68
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLT8_9STRA)

HSP 1 Score: 104 bits (259), Expect = 2.170e-26
Identity = 48/59 (81.36%), Postives = 54/59 (91.53%), Query Frame = 1 
Query:    1 VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKA 177
            VCTRKTRILDVVYNASNNELVRTKTLVK A+V +DA PF+ WYE HYG+AIG+KKGK+A
Sbjct:   71 VCTRKTRILDVVYNASNNELVRTKTLVKGAVVSIDATPFRQWYEAHYGIAIGVKKGKRA 129
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: Ribosomal (protein S8a n=1 Tax=Cyprinus carpio TaxID=7962 RepID=A0A8C2FGN9_CYPCA)

HSP 1 Score: 101 bits (252), Expect = 2.290e-26
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    4 CTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEEV 198
            CTRKTRI+DVVYNASNNELVRTKTLVKN IV+VD+ P++ WYE+HY + +G KKG K  P EEE+
Sbjct:   20 CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSTPYRQWYESHYALPLGRKKGAKLTPEEEEI 84
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=2 Tax=Sar TaxID=2698737 RepID=A0A7S0GFZ1_9STRA)

HSP 1 Score: 103 bits (258), Expect = 2.360e-26
Identity = 48/65 (73.85%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    1 VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEE 195
            VCTRKTR+LDV YNASNNELVRTKTLVK AI+++DA PFK WYE HYGV +G+KKG KA   EE+
Sbjct:   71 VCTRKTRVLDVTYNASNNELVRTKTLVKGAIILIDAAPFKKWYEAHYGVKVGIKKGTKAEAEEEK 135
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=2 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V503_9CNID)

HSP 1 Score: 103 bits (258), Expect = 2.790e-26
Identity = 48/63 (76.19%), Postives = 55/63 (87.30%), Query Frame = 1 
Query:    7 TRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEE 195
            TRKTR+LDVVYNASNNELVRTKTLVKNAI+++DA PFK W+E HYGVA+G KKG K P  EE+
Sbjct:   73 TRKTRVLDVVYNASNNELVRTKTLVKNAIILIDATPFKQWFEAHYGVAVGRKKGHKIPEGEED 135
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BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: 40S (ribosomal protein S8 n=1 Tax=Elephantulus edwardii TaxID=28737 RepID=UPI0003F0B1DE)

HSP 1 Score: 101 bits (251), Expect = 3.960e-26
Identity = 45/65 (69.23%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    4 CTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEEV 198
            CTRKTRI+DVVYNASNNELVRTKTLVKN IV++D+ P++ WYE+HY + +G KKG K  P EEE+
Sbjct:   30 CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEI 94
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Match: Uncharacterized (protein n=1 Tax=Callipepla squamata TaxID=9009 RepID=A0A226NM89_CALSU)

HSP 1 Score: 101 bits (252), Expect = 4.980e-26
Identity = 46/65 (70.77%), Postives = 55/65 (84.62%), Query Frame = 1 
Query:    4 CTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVAIGLKKGKKAPPAEEEV 198
            CTRKTRI+DVVYNASNNELVRTKTLVKN IV+VD+ P++ WYE+HY + +G KKG K  P EEE+
Sbjct:   13 CTRKTRIIDVVYNASNNELVRTKTLVKNCIVLVDSMPYRQWYESHYALPLGRKKGAKLTPEEEEI 77
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8876.1.2 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
40S2.940e-3695.38ribosomal protein S8 n=2 Tax=Ectocarpus TaxID=2879... [more]
40S7.180e-2879.69ribosomal protein S8 n=2 Tax=Ochrophyta TaxID=2696... [more]
40S2.140e-2779.69ribosomal protein S8 n=1 Tax=Trieres chinensis Tax... [more]
40S1.940e-2672.31ribosomal protein S8-like n=1 Tax=Sinocyclocheilus... [more]
40S2.170e-2681.36ribosomal protein S8 n=1 Tax=Tribonema minus TaxID... [more]
Ribosomal2.290e-2670.77protein S8a n=1 Tax=Cyprinus carpio TaxID=7962 Rep... [more]
40S2.360e-2673.85ribosomal protein S8 n=2 Tax=Sar TaxID=2698737 Rep... [more]
40S2.790e-2676.19ribosomal protein S8 n=2 Tax=Clytia hemisphaerica ... [more]
40S3.960e-2669.23ribosomal protein S8 n=1 Tax=Elephantulus edwardii... [more]
Uncharacterized4.980e-2670.77protein n=1 Tax=Callipepla squamata TaxID=9009 Rep... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8876contigH-canaliculatus_M_contigs8876:2900..3763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FHG3
Preferred nameRPS8
PFAMsRibosomal_S8e
Model size198
Max annot lvl2759|Eukaryota
KEGG koko:K02995
KEGG Pathwayko03010,map03010
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000313,GO:0000462,GO:0000956,GO:0002164,GO:0002181,GO:0002182,GO:0002376,GO:0002520,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0005911,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006414,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009547,GO:0009570,GO:0009790,GO:0009791,GO:0009792,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0012505,GO:0015031,GO:0015833,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0022607,GO:0022613,GO:0022618,GO:0022626,GO:0022627,GO:0030054,GO:0030097,GO:0030312,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035166,GO:0035167,GO:0042254,GO:0042255,GO:0042274,GO:0042788,GO:0042886,GO:0043009,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043253,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044434,GO:0044435,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0048513,GO:0048519,GO:0048534,GO:0048542,GO:0048569,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051726,GO:0055044,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0097159,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1990904
Exons2
Evalue4.82e-37
EggNOG OGsCOG2007@1|root,KOG3283@2759|Eukaryota
Descriptionstructural constituent of ribosome
Cds size198
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854178.0775063-CDS-H-canaliculatus_M_contigs8876:2899..29981696854178.0775063-CDS-H-canaliculatus_M_contigs8876:2899..2998Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8876 2900..2998 -
1696854178.090987-CDS-H-canaliculatus_M_contigs8876:3664..37631696854178.090987-CDS-H-canaliculatus_M_contigs8876:3664..3763Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8876 3665..3763 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8876.1.2prot_H-canaliculatus_M_contigs8876.1.2Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8876 2900..3763 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8876.1.2

>prot_H-canaliculatus_M_contigs8876.1.2 ID=prot_H-canaliculatus_M_contigs8876.1.2|Name=mRNA_H-canaliculatus_M_contigs8876.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=66bp
VCTRKTRILDVVYNASNNELVRTKTLVKNAIVVVDAHPFKHWYENHYGVA
IGLKKGKKAPPAEEEV
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mRNA from alignment at H-canaliculatus_M_contigs8876:2900..3763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8876.1.2 ID=mRNA_H-canaliculatus_M_contigs8876.1.2|Name=mRNA_H-canaliculatus_M_contigs8876.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=864bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8876:2900..3763- (Hapterophycus canaliculatus Oshoro7m male)
GTGTGCACCCGCAAGACCCGTATCCTCGACGTGGTCTACAACGCCAGCAA
CAACGAGCTGGTCCGCACCAAGACTCTCGTTAAGAACGCTATCGTTGTGG
TGAGTGCAATCGCCCCGCTATTAGAACTATGGAAGCATTGAAGGCAAGGA
GGGGTAGCTTCTCGATCGCATTTTCAACGGTCCCACGTGTGCCCACATTA
GAGAGACGGTTTGTTCGTGAACCTCGCGTCTACTTTCTGCGTTGATGTTT
CCCCCTGCGTGGCGGTGTGCCCTTTGAACGACGTAAAAAAGGAGTGACTG
CTGTTTACCCATATCTTTGCCCCGACGCCATGCAAGTGTCGAGAGACGAC
CGTTAAGGTGTTAATCCTTGTTGGCACTGTCCGAAGCATCTGGACGTCAA
ACCACGTGCATCTGTCGCGGACAATCGTCGGACCCTCCCGTCGAATCTCG
AATCATAAAATTTGCCTCGAGTTTGTGCACCTCGCGAAAACGGTTAAAAA
GGTATAATACCGCAAAATTACGTTTGGCGTCAGATCCGTCGGAGTGTGGA
ACCCGTACCAGCACGCACGGACAACAACACACATCTTTCTGTCGGCCAAG
TCTTGGCGATATGATCGATCGTAGCACTTCCCGCACAAAATCAGGGTGTC
AAATGTAGTGTGCGATAAATCCCGATCTGTGACATGGTGGATCATTCGAT
CCCCCACCCTCTAGCCCCATCACTGACCAAGTCCCTCCTTCACCAACGTC
GGACGTGTGCACTAGGTCGACGCCCACCCCTTCAAGCACTGGTACGAGAA
CCACTACGGAGTTGCCATCGGGCTCAAGAAGGGCAAGAAGGCACCCCCCG
CTGAGGAGGAGGTA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8876:2900..3763-

>mRNA_H-canaliculatus_M_contigs8876.1.2 ID=mRNA_H-canaliculatus_M_contigs8876.1.2|Name=mRNA_H-canaliculatus_M_contigs8876.1.2|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=198bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8876:2900..3763- (Hapterophycus canaliculatus Oshoro7m male)
GTGTGCACCCGCAAGACCCGTATCCTCGACGTGGTCTACAACGCCAGCAA
CAACGAGCTGGTCCGCACCAAGACTCTCGTTAAGAACGCTATCGTTGTGG
TCGACGCCCACCCCTTCAAGCACTGGTACGAGAACCACTACGGAGTTGCC
ATCGGGCTCAAGAAGGGCAAGAAGGCACCCCCCGCTGAGGAGGAGGTA
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