mRNA_H-canaliculatus_M_contigs8827.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8827.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8827.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8827.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8827contigH-canaliculatus_M_contigs8827:2763..3360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start1
Model size598
Hectar predicted targeting categoryother localisation
Exons1
Cds size327
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854175.0908012-UTR-H-canaliculatus_M_contigs8827:2762..30121696854175.0908012-UTR-H-canaliculatus_M_contigs8827:2762..3012Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8827 2763..3012 +
1696854175.1521442-UTR-H-canaliculatus_M_contigs8827:3339..33601696854175.1521442-UTR-H-canaliculatus_M_contigs8827:3339..3360Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs8827 3340..3360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854175.133117-CDS-H-canaliculatus_M_contigs8827:3012..33391696854175.133117-CDS-H-canaliculatus_M_contigs8827:3012..3339Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8827 3013..3339 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8827.1.1prot_H-canaliculatus_M_contigs8827.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8827 3013..3339 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8827.1.1

>prot_H-canaliculatus_M_contigs8827.1.1 ID=prot_H-canaliculatus_M_contigs8827.1.1|Name=mRNA_H-canaliculatus_M_contigs8827.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=109bp
MALLPARGDYWAQGGSSSWVGNKVCLCDPRENSLCGDHESTTYRGCLGVE
SVFTRRNDKRPNIGGRFPPLKTPFFPPPCAELTVEPKVSGDPIAVKRAIS
AASNWWTV*
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mRNA from alignment at H-canaliculatus_M_contigs8827:2763..3360+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8827.1.1 ID=mRNA_H-canaliculatus_M_contigs8827.1.1|Name=mRNA_H-canaliculatus_M_contigs8827.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=598bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8827:2763..3360+ (Hapterophycus canaliculatus Oshoro7m male)
CGGAAATTAATTTGCGTTGTCGAGTGGCGTTGAGCGTTGACACCGTTGAG
GGCGCTTGATCGGGGGAGAATCCCACTTTTGGCTCGAGTTTCAGGGGGTG
GAAAAAGGCAAGGCGGATGGTGGAGAACATGGCCACCGCAAAGGGCGCGA
TCGGCGCTGACAAGTGCAAGCAGGGATACCAAGAAGGATACGGATACGGT
GGCGATAGCACCGACGATGAGTTGAACAAATCATAGGGTCACCGCCAGTT
ATGGCCTTGTTGCCGGCGCGAGGGGATTATTGGGCACAAGGAGGCAGTAG
TTCTTGGGTAGGAAATAAAGTATGTTTGTGTGACCCTCGTGAGAACAGCC
TTTGCGGAGACCATGAAAGCACAACATACCGCGGATGTCTCGGGGTAGAA
TCTGTTTTCACTCGGCGTAACGATAAACGGCCTAACATTGGGGGTCGTTT
TCCGCCGTTGAAGACGCCTTTCTTTCCCCCTCCTTGCGCTGAATTGACGG
TTGAGCCAAAGGTCAGTGGAGATCCAATCGCTGTAAAACGCGCCATTTCG
GCGGCAAGCAACTGGTGGACTGTATAATTACGCAGATACCAAGCATCC
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8827:2763..3360+

>mRNA_H-canaliculatus_M_contigs8827.1.1 ID=mRNA_H-canaliculatus_M_contigs8827.1.1|Name=mRNA_H-canaliculatus_M_contigs8827.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=327bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8827:2763..3360+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGCCTTGTTGCCGGCGCGAGGGGATTATTGGGCACAAGGAGGCAGTAG
TTCTTGGGTAGGAAATAAAGTATGTTTGTGTGACCCTCGTGAGAACAGCC
TTTGCGGAGACCATGAAAGCACAACATACCGCGGATGTCTCGGGGTAGAA
TCTGTTTTCACTCGGCGTAACGATAAACGGCCTAACATTGGGGGTCGTTT
TCCGCCGTTGAAGACGCCTTTCTTTCCCCCTCCTTGCGCTGAATTGACGG
TTGAGCCAAAGGTCAGTGGAGATCCAATCGCTGTAAAACGCGCCATTTCG
GCGGCAAGCAACTGGTGGACTGTATAA
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