mRNA_H-canaliculatus_M_contigs8812.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8812.1.1
Unique NamemRNA_H-canaliculatus_M_contigs8812.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8812.1.1 vs.
Match: Ankyrin (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 1.510e-22
Identity = 78/179 (43.58%), Postives = 96/179 (53.63%), Query Frame = 1 
Query:   25 FSKRSSSSLTGRAQTTTSSACGGVGEVLVEISTPGARSPIHFIEGS--APTSCRGRSRPTGGNA---ATGSAGCFLSSTLLSDKGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSSSLDGVCLTLLGVSTGLKTPGVDAWAVARALVESSVDLRTRNVRGMTPLHLACSAGQVD 546
            FS+RSS       + +++S CG VG+V++E  TPGARSPI F++ +  A  SCRGR  P GGN    A GS+       LL  +                                  ++  LDG  LTLLGVS  L TP  D W VARAL+ES+ DLRTRN RGMTPLHLACS G+VD
Sbjct:   18 FSQRSS------CERSSTSTCG-VGDVILEFCTPGARSPIDFVDATTAAAASCRGR--PCGGNTTCYAHGSSRDVRPPVLLRQQSAPASSTARPSAEASVYTGKHHRRT---------STPPLDGARLTLLGVSKALNTPVQDNWEVARALLESNTDLRTRNDRGMTPLHLACSTGEVD 178
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8812.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Ankyrin1.510e-2243.58n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FII0_ECTSI[more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8812contigH-canaliculatus_M_contigs8812:3616..4693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FII0
PFAMsAnk,Ank_2,Ank_3,Ank_4
Model size723
Max annot lvl2759|Eukaryota
KEGG koko:K15503
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.48e-23
EggNOG OGsCOG0666@1|root,KOG4177@2759|Eukaryota
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-28_000350.1
Descriptionspectrin binding
Cds size723
COG categoryI
BRITEko00000,ko01009,ko03400
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854174.6945343-CDS-H-canaliculatus_M_contigs8812:3615..41551696854174.6945343-CDS-H-canaliculatus_M_contigs8812:3615..4155Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8812 3616..4155 +
1696854174.7069771-CDS-H-canaliculatus_M_contigs8812:4510..46931696854174.7069771-CDS-H-canaliculatus_M_contigs8812:4510..4693Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8812 4511..4693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8812.1.1prot_H-canaliculatus_M_contigs8812.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8812 3616..4693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8812.1.1

>prot_H-canaliculatus_M_contigs8812.1.1 ID=prot_H-canaliculatus_M_contigs8812.1.1|Name=mRNA_H-canaliculatus_M_contigs8812.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=241bp
SSSSGKSVFSKRSSSSLTGRAQTTTSSACGGVGEVLVEISTPGARSPIHF
IEGSAPTSCRGRSRPTGGNAATGSAGCFLSSTLLSDKGGSAPPTPPPFSS
SSSSTSGRSVFSSSPVKHHRRTSSSLDGVCLTLLGVSTGLKTPGVDAWAV
ARALVESSVDLRTRNVRGMTPLHLACSAGQVDVARVLLLAGADSHARDHR
SRCPLHMAALSGSSELVTSLLACGANPNKASDIGTTPLHNA
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mRNA from alignment at H-canaliculatus_M_contigs8812:3616..4693+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8812.1.1 ID=mRNA_H-canaliculatus_M_contigs8812.1.1|Name=mRNA_H-canaliculatus_M_contigs8812.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=1078bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8812:3616..4693+ (Hapterophycus canaliculatus Oshoro7m male)
AGCAGCAGCAGCGGGAAGAGCGTTTTCTCCAAGCGATCGTCTTCTTCTCT
GACTGGGAGGGCACAAACAACGACTTCATCAGCTTGCGGCGGGGTCGGTG
AAGTGCTGGTGGAGATTTCCACCCCCGGCGCCCGATCGCCGATACACTTC
ATTGAGGGATCGGCTCCCACATCATGCCGCGGGAGGTCCCGTCCAACAGG
AGGCAACGCCGCCACCGGCAGCGCGGGTTGTTTCCTTTCGTCGACTCTGT
TGAGCGACAAGGGAGGATCAGCGCCGCCGACACCGCCCCCGTTCTCGTCG
TCTTCGTCATCGACATCGGGCAGGAGCGTTTTTAGTAGCTCTCCAGTCAA
GCACCACCGGAGGACATCGTCCTCCCTCGACGGCGTCTGCCTCACGCTTC
TCGGTGTGTCCACGGGGTTGAAGACCCCGGGTGTGGATGCTTGGGCGGTG
GCTCGAGCGCTGGTGGAGTCGAGTGTTGATCTCCGGACGAGAAACGTCAG
GGGTATGACTCCCCTCCACTTGGCGTGTTCGGCTGGACAGGTAAGGCTCG
AAGAAACAGAGGATGCTTGCACTCTACATACATGGCGGATCCCTGTCGTA
CGGAGACTTTCCATTCGACCAGTGCGTCGGACGAACAATTTGCGGTGGCA
ACTGGAGGACCCGGAGCGTTATTTGTTATCTGCAGCGTACTTGAAGGTCC
GAGGGTCGGCCACGAGCGGGAATCTGAGGAATCTTGAGAGCTCTCTTTAT
TTGTTTGCGTAGAAGACGACGTCGCAACACGGTGCCGACCTCTCTTAAAG
CTCTCTAGTTTCTGCAGCTTTCACGCCGTGTCCGTCGCAGACTTATGCTC
ATCCCATGCTGAATTCTCCGATTTCCCCGCACTGCTGTCTCTCAGGTTGA
TGTGGCGAGAGTGCTTCTTCTAGCCGGCGCCGACTCGCATGCAAGGGACC
ACCGGTCTCGATGCCCGCTGCACATGGCGGCCTTGTCTGGCAGCTCGGAG
CTGGTGACCTCTTTGCTCGCTTGCGGAGCCAACCCCAACAAGGCGTCCGA
CATAGGAACGACCCCTCTCCACAATGCG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8812:3616..4693+

>mRNA_H-canaliculatus_M_contigs8812.1.1 ID=mRNA_H-canaliculatus_M_contigs8812.1.1|Name=mRNA_H-canaliculatus_M_contigs8812.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=723bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8812:3616..4693+ (Hapterophycus canaliculatus Oshoro7m male)
AGCAGCAGCAGCGGGAAGAGCGTTTTCTCCAAGCGATCGTCTTCTTCTCT
GACTGGGAGGGCACAAACAACGACTTCATCAGCTTGCGGCGGGGTCGGTG
AAGTGCTGGTGGAGATTTCCACCCCCGGCGCCCGATCGCCGATACACTTC
ATTGAGGGATCGGCTCCCACATCATGCCGCGGGAGGTCCCGTCCAACAGG
AGGCAACGCCGCCACCGGCAGCGCGGGTTGTTTCCTTTCGTCGACTCTGT
TGAGCGACAAGGGAGGATCAGCGCCGCCGACACCGCCCCCGTTCTCGTCG
TCTTCGTCATCGACATCGGGCAGGAGCGTTTTTAGTAGCTCTCCAGTCAA
GCACCACCGGAGGACATCGTCCTCCCTCGACGGCGTCTGCCTCACGCTTC
TCGGTGTGTCCACGGGGTTGAAGACCCCGGGTGTGGATGCTTGGGCGGTG
GCTCGAGCGCTGGTGGAGTCGAGTGTTGATCTCCGGACGAGAAACGTCAG
GGGTATGACTCCCCTCCACTTGGCGTGTTCGGCTGGACAGGTTGATGTGG
CGAGAGTGCTTCTTCTAGCCGGCGCCGACTCGCATGCAAGGGACCACCGG
TCTCGATGCCCGCTGCACATGGCGGCCTTGTCTGGCAGCTCGGAGCTGGT
GACCTCTTTGCTCGCTTGCGGAGCCAACCCCAACAAGGCGTCCGACATAG
GAACGACCCCTCTCCACAATGCG
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