mRNA_H-canaliculatus_M_contigs8317.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8317.2.1
Unique NamemRNA_H-canaliculatus_M_contigs8317.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA14_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.380e-28
Identity = 58/88 (65.91%), Postives = 71/88 (80.68%), Query Frame = 1
Query:    1 RKIKYEAQLTSEVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            RK +Y+AQ+ SEVLRY+G+  +  D NPL WWD H+ + PLLRE++ R+LCVPASSAASERLFSKAGLT TK R+ L G +VAQLVTL
Sbjct:  475 RKEEYDAQMKSEVLRYRGVTSMNPDGNPLTWWDQHKATFPLLRELSHRILCVPASSAASERLFSKAGLTLTKQRSLLAGNRVAQLVTL 562          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDT4_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 4.500e-20
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 RKIKYEAQLTSEVLRYKGLGRLPMDRNPLAWWDSHQQ--SLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            RK +Y AQ+  EVLRY+ L ++  + +PL WW+  QQ  S P LRE+ MRVLCVPA SA+S+R+FSK GL +   R RLRG +VA  +T+
Sbjct:  813 RKDQYLAQIRWEVLRYRALDKIDSEADPLLWWEQEQQRWSFPFLRELVMRVLCVPACSASSKRVFSKTGLVDNSKRARLRGSRVAPRLTI 902          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHJ9_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.620e-19
Identity = 47/90 (52.22%), Postives = 63/90 (70.00%), Query Frame = 1
Query:    1 RKIKYEAQLTSEVLRYKGLGRLPMDRNPLAWWDSHQQ--SLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            RK +Y AQ+  EVLRY+ L ++  + +PL WW+  QQ  S P LR++AMRVLCVPA SA+S+RLF K G+     R RLRG +VAQ +T+
Sbjct:  379 RKDQYLAQIRWEVLRYRALDKIDSESDPLLWWEQGQQRWSFPSLRQLAMRVLCVPACSASSKRLFFKTGVVGNSKRARLRGSRVAQRLTV 468          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=2 Tax=Pangasianodon hypophthalmus TaxID=310915 RepID=A0A5N5KAL8_PANHP)

HSP 1 Score: 75.1 bits (183), Expect = 3.100e-14
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   34 EVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            EVL+Y+ +  LP+  +PL WW SH+  LP+L  +A   LC+PA+S ASER+FS AG   +  R+ LR   V QL+ L
Sbjct:  204 EVLKYRSMAPLPLTESPLDWWKSHETELPILANLARSYLCIPATSVASERVFSTAGDIVSSQRSSLRPDCVNQLIFL 280          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: BED-type (domain-containing protein n=1 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667YW07_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 3.940e-14
Identity = 35/83 (42.17%), Postives = 53/83 (63.86%), Query Frame = 1
Query:   16 EAQLTSEVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            E    SE+ +Y  L  +P++ +PL WW  H+Q  P++  +A + LC+PA+S ASER+FS AG   +KLR+RL    V +L+ L
Sbjct:  493 EENSESELEQYLSLPAIPLEADPLEWWKKHEQQYPIMSRLARKFLCIPATSVASERVFSAAGQAVSKLRSRLLPDNVDKLIFL 575          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Zinc (finger BED domain-containing 1-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498M8L4_LABRO)

HSP 1 Score: 73.2 bits (178), Expect = 1.680e-13
Identity = 33/77 (42.86%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   34 EVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            E+  Y  L  + +D+NPL WW  ++Q  P L ++A ++LC+PA+S ASERLFS +G  +T  R+ L+  K+  LV L
Sbjct:  208 EISAYTTLPTISVDKNPLQWWKENEQEFPRLAKVAQKILCIPATSVASERLFSSSGNIQTVFRSSLKPDKLNMLVFL 284          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein n=1 Tax=Astatotilapia calliptera TaxID=8154 RepID=A0A3P8NTG9_ASTCA)

HSP 1 Score: 72.4 bits (176), Expect = 5.570e-13
Identity = 35/77 (45.45%), Postives = 48/77 (62.34%), Query Frame = 1
Query:   34 EVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            E+ RY     +P D+NPL WW  H+Q+ P L  + +R L + ASS  +ER+FSKAG   +K R+RLRG  V  L+ L
Sbjct:  280 EIRRYSEEKLIPRDKNPLVWWQEHEQTFPSLSRLVVRYLGIVASSVPAERIFSKAGEVVSKKRSRLRGKTVNMLLFL 356          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: zinc (finger BED domain-containing protein 1-like n=1 Tax=Nothobranchius furzeri TaxID=105023 RepID=UPI00077CEF99)

HSP 1 Score: 72.0 bits (175), Expect = 5.610e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   28 TSEVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            + EV RY+    LP++ NPL WW   QQ LPLL  +A R LC+PA+S ASER+FS AG   +  R+ L+   V QL+ L
Sbjct:  224 SEEVKRYRERASLPLEENPLQWWKE-QQDLPLLSSLAKRYLCIPATSVASERVFSTAGDIVSTKRSLLKHEHVDQLIFL 301          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: Dimer_Tnp_hAT (domain-containing protein (Fragment) n=1 Tax=Nothobranchius rachovii TaxID=451742 RepID=A0A1A8SIR0_9TELE)

HSP 1 Score: 67.8 bits (164), Expect = 6.270e-13
Identity = 36/84 (42.86%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   31 SEVLRYKGLG------RLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            S+ + YK  G       +P D++PL WW  H+Q+ P L ++A+R L V ASS  +ER+FSKAG   +K R+RL+G  V  L+ L
Sbjct:    8 SQSILYKTAGVYSEEKLIPRDKDPLLWWQEHEQTFPALSKLAVRYLGVVASSVPAERIFSKAGEVLSKRRSRLKGKTVNMLLFL 91          
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Match: BED-type (domain-containing protein n=8 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8USA6_NOTFU)

HSP 1 Score: 72.0 bits (175), Expect = 8.950e-13
Identity = 38/79 (48.10%), Postives = 50/79 (63.29%), Query Frame = 1
Query:   28 TSEVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVLCVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL 264
            + EV RY+    LP++ NPL WW   QQ LPLL  +A R LC+PA+S ASER+FS AG   +  R+ L+   V QL+ L
Sbjct:  577 SEEVKRYRERASLPLEENPLQWWKE-QQDLPLLSSLAKRYLCIPATSVASERVFSTAGDIVSTKRSLLKHEHVDQLIFL 654          
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8317.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dimer_Tnp_hAT1.380e-2865.91domain-containing protein n=2 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT4.500e-2052.22domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Dimer_Tnp_hAT4.620e-1952.22domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Dimer_Tnp_hAT3.100e-1446.75domain-containing protein n=2 Tax=Pangasianodon hy... [more]
BED-type3.940e-1442.17domain-containing protein n=1 Tax=Myripristis murd... [more]
Zinc1.680e-1342.86finger BED domain-containing 1-like protein n=1 Ta... [more]
Dimer_Tnp_hAT5.570e-1345.45domain-containing protein n=1 Tax=Astatotilapia ca... [more]
zinc5.610e-1348.10finger BED domain-containing protein 1-like n=1 Ta... [more]
Dimer_Tnp_hAT6.270e-1342.86domain-containing protein (Fragment) n=1 Tax=Notho... [more]
BED-type8.950e-1348.10domain-containing protein n=8 Tax=Nothobranchius T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8317contigH-canaliculatus_M_contigs8317:4517..4780 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog400682.PAC_15703692
PFAMsDimer_Tnp_hAT
Model size264
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue2.86e-12
EggNOG OGsKOG1121@1|root,KOG1121@2759|Eukaryota,3AASQ@33154|Opisthokonta,3BV23@33208|Metazoa
DescriptionhAT family C-terminal dimerisation region
Cds size264
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854147.1996894-CDS-H-canaliculatus_M_contigs8317:4516..47801696854147.1996894-CDS-H-canaliculatus_M_contigs8317:4516..4780Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8317 4517..4780 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8317.2.1prot_H-canaliculatus_M_contigs8317.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8317 4517..4780 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8317.2.1

>prot_H-canaliculatus_M_contigs8317.2.1 ID=prot_H-canaliculatus_M_contigs8317.2.1|Name=mRNA_H-canaliculatus_M_contigs8317.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=88bp
RKIKYEAQLTSEVLRYKGLGRLPMDRNPLAWWDSHQQSLPLLREIAMRVL
CVPASSAASERLFSKAGLTETKLRNRLRGPKVAQLVTL
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mRNA from alignment at H-canaliculatus_M_contigs8317:4517..4780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8317.2.1 ID=mRNA_H-canaliculatus_M_contigs8317.2.1|Name=mRNA_H-canaliculatus_M_contigs8317.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=264bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8317:4517..4780+ (Hapterophycus canaliculatus Oshoro7m male)
CGGAAGATTAAGTACGAGGCTCAGCTTACATCGGAGGTGCTGCGGTACAA AGGTCTAGGGAGGCTGCCCATGGATCGCAACCCGCTCGCATGGTGGGACA GCCACCAACAGTCCCTCCCACTTCTGAGGGAGATCGCGATGCGTGTTCTC TGTGTCCCGGCTTCGTCGGCCGCGTCGGAGCGCCTCTTCTCCAAGGCGGG ACTCACCGAGACGAAGCTTCGGAACCGGCTCCGAGGGCCGAAGGTGGCCC AGCTTGTGACCCTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8317:4517..4780+

>mRNA_H-canaliculatus_M_contigs8317.2.1 ID=mRNA_H-canaliculatus_M_contigs8317.2.1|Name=mRNA_H-canaliculatus_M_contigs8317.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=264bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8317:4517..4780+ (Hapterophycus canaliculatus Oshoro7m male)
CGGAAGATTAAGTACGAGGCTCAGCTTACATCGGAGGTGCTGCGGTACAA
AGGTCTAGGGAGGCTGCCCATGGATCGCAACCCGCTCGCATGGTGGGACA
GCCACCAACAGTCCCTCCCACTTCTGAGGGAGATCGCGATGCGTGTTCTC
TGTGTCCCGGCTTCGTCGGCCGCGTCGGAGCGCCTCTTCTCCAAGGCGGG
ACTCACCGAGACGAAGCTTCGGAACCGGCTCCGAGGGCCGAAGGTGGCCC
AGCTTGTGACCCTG
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