mRNA_H-canaliculatus_M_contigs8016.4.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs8016.4.1
Unique NamemRNA_H-canaliculatus_M_contigs8016.4.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs8016.4.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHP2_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 1.420e-12
Identity = 144/313 (46.01%), Postives = 161/313 (51.44%), Query Frame = 1 
Query:    1 MTRGCGILVVAAFAATATWPSPSPCRSSSIAWGFLTTTLPSTASSPNAANRRTLHSHRTGRGGSWSAAAKAAAAGERRESICDSSGRALHMIAAAEDEGSEVGLGSRRQVLLSSSPCRPFCNSNCRIGRRTLGLAGANYGGGDGXXXXLGRGGLDPESVARAREAAKNDDYDWFMEFIEGGEDAGDDGTGIDPEDSSRGSATGVLNNRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGYDADLVDGSATXXXXXXXXXXXXXTGRGFQPPTNG-NRGDERRRGQRPSAAADSAYDYDLDDEYDREPGR 936
            MTRG G+L+ AA A TATWPS +P RS+S AWGFL       A++P +AN                                             +   S     SR ++LL  S             R T         GG  XXXX    GLD ESVARAREAAK DDYDWFMEFI           G+D E+              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX            XXXXXXXXXXXXX GRGFQP + G     E RR +RPS A D+AYDYDLD+EYD+EPGR
Sbjct:    1 MTRGRGVLLAAAVATTATWPSSTPGRSTSSAWGFL-------AAAPRSAN-------------------------------------------CLDANKSTSSTSSRARLLLLPS-------------RAT---------GGXXXXXXXXXXGLDAESVARAREAAKKDDYDWFMEFI-----------GVDEEEXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGRGFQPLSGGVGTTGEMRRERRPSPA-DTAYDYDLDEEYDQEPGR 226
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs8016.4.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.420e-1246.01protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs8016contigH-canaliculatus_M_contigs8016:4185..5120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size936
Hectar predicted targeting categorychloroplast
Exons1
Cds size936
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854130.8591492-CDS-H-canaliculatus_M_contigs8016:4184..51201696854130.8591492-CDS-H-canaliculatus_M_contigs8016:4184..5120Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs8016 4185..5120 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs8016.4.1prot_H-canaliculatus_M_contigs8016.4.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs8016 4185..5120 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs8016.4.1

>prot_H-canaliculatus_M_contigs8016.4.1 ID=prot_H-canaliculatus_M_contigs8016.4.1|Name=mRNA_H-canaliculatus_M_contigs8016.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=312bp
MTRGCGILVVAAFAATATWPSPSPCRSSSIAWGFLTTTLPSTASSPNAAN
RRTLHSHRTGRGGSWSAAAKAAAAGERRESICDSSGRALHMIAAAEDEGS
EVGLGSRRQVLLSSSPCRPFCNSNCRIGRRTLGLAGANYGGGDGGDGGLG
RGGLDPESVARAREAAKNDDYDWFMEFIEGGEDAGDDGTGIDPEDSSRGS
ATGVLNNRGGGSSGGVGGRQRSTAQGDRRNDNGRDSSSSSSSGYDADLVD
GSATGGGVAPQRRRPPPTGRGFQPPTNGNRGDERRRGQRPSAAADSAYDY
DLDDEYDREPGR
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mRNA from alignment at H-canaliculatus_M_contigs8016:4185..5120+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs8016.4.1 ID=mRNA_H-canaliculatus_M_contigs8016.4.1|Name=mRNA_H-canaliculatus_M_contigs8016.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=936bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8016:4185..5120+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGAGAGGTTGTGGGATTCTGGTTGTAGCCGCGTTCGCAGCAACAGC
AACATGGCCGTCACCGAGCCCCTGCCGTAGCAGCAGTATCGCTTGGGGCT
TTCTCACAACAACGCTACCATCCACTGCGTCCTCACCGAATGCTGCCAAT
CGGAGGACTTTGCACTCACACCGTACGGGCCGCGGTGGGTCCTGGTCTGC
CGCCGCCAAAGCCGCTGCTGCTGGTGAACGGCGGGAGAGCATCTGCGACA
GCAGTGGTCGAGCGTTGCATATGATCGCTGCTGCCGAAGATGAGGGCTCT
GAGGTCGGGTTGGGAAGCAGGCGGCAGGTGCTGCTGTCTTCTAGCCCCTG
CAGACCTTTTTGCAACAGCAATTGCCGCATCGGCAGGCGGACGCTTGGGT
TAGCCGGCGCCAACTACGGCGGTGGAGATGGTGGAGACGGTGGGCTTGGA
CGGGGTGGTCTTGACCCCGAGAGCGTCGCGAGAGCTCGCGAGGCAGCCAA
GAACGACGACTACGACTGGTTCATGGAATTCATCGAGGGCGGCGAGGATG
CTGGGGATGATGGAACTGGAATCGATCCCGAGGATAGCAGCAGAGGATCA
GCAACGGGCGTCCTCAATAACAGAGGCGGCGGCAGCAGCGGAGGCGTTGG
CGGTAGGCAAAGATCCACCGCACAAGGCGACAGGCGCAACGACAACGGAC
GCGACAGCAGCAGCAGCAGCAGCAGCGGGTATGACGCCGATCTTGTCGAT
GGAAGCGCTACTGGTGGCGGCGTTGCTCCACAGAGGCGTCGCCCGCCGCC
CACCGGGCGGGGTTTCCAGCCCCCAACCAACGGTAACCGTGGGGACGAGA
GGAGGAGGGGACAGCGGCCAAGTGCAGCTGCGGACTCGGCCTACGACTAC
GATCTAGATGACGAGTACGATCGGGAGCCAGGGAGG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs8016:4185..5120+

>mRNA_H-canaliculatus_M_contigs8016.4.1 ID=mRNA_H-canaliculatus_M_contigs8016.4.1|Name=mRNA_H-canaliculatus_M_contigs8016.4.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=936bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs8016:4185..5120+ (Hapterophycus canaliculatus Oshoro7m male)
ATGACGAGAGGTTGTGGGATTCTGGTTGTAGCCGCGTTCGCAGCAACAGC
AACATGGCCGTCACCGAGCCCCTGCCGTAGCAGCAGTATCGCTTGGGGCT
TTCTCACAACAACGCTACCATCCACTGCGTCCTCACCGAATGCTGCCAAT
CGGAGGACTTTGCACTCACACCGTACGGGCCGCGGTGGGTCCTGGTCTGC
CGCCGCCAAAGCCGCTGCTGCTGGTGAACGGCGGGAGAGCATCTGCGACA
GCAGTGGTCGAGCGTTGCATATGATCGCTGCTGCCGAAGATGAGGGCTCT
GAGGTCGGGTTGGGAAGCAGGCGGCAGGTGCTGCTGTCTTCTAGCCCCTG
CAGACCTTTTTGCAACAGCAATTGCCGCATCGGCAGGCGGACGCTTGGGT
TAGCCGGCGCCAACTACGGCGGTGGAGATGGTGGAGACGGTGGGCTTGGA
CGGGGTGGTCTTGACCCCGAGAGCGTCGCGAGAGCTCGCGAGGCAGCCAA
GAACGACGACTACGACTGGTTCATGGAATTCATCGAGGGCGGCGAGGATG
CTGGGGATGATGGAACTGGAATCGATCCCGAGGATAGCAGCAGAGGATCA
GCAACGGGCGTCCTCAATAACAGAGGCGGCGGCAGCAGCGGAGGCGTTGG
CGGTAGGCAAAGATCCACCGCACAAGGCGACAGGCGCAACGACAACGGAC
GCGACAGCAGCAGCAGCAGCAGCAGCGGGTATGACGCCGATCTTGTCGAT
GGAAGCGCTACTGGTGGCGGCGTTGCTCCACAGAGGCGTCGCCCGCCGCC
CACCGGGCGGGGTTTCCAGCCCCCAACCAACGGTAACCGTGGGGACGAGA
GGAGGAGGGGACAGCGGCCAAGTGCAGCTGCGGACTCGGCCTACGACTAC
GATCTAGATGACGAGTACGATCGGGAGCCAGGGAGG
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