mRNA_H-canaliculatus_M_contigs7998.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7998.2.1
Unique NamemRNA_H-canaliculatus_M_contigs7998.2.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7998.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNY0_ECTSI)

HSP 1 Score: 171 bits (434), Expect = 6.190e-49
Identity = 115/244 (47.13%), Postives = 145/244 (59.43%), Query Frame = 1 
Query:   22 AAACGRSCLRRF----SERVQGPSPFSGAKTHRQSRALHYTR----------STLKDYGDTEQNANMRAGPESGTTDAAPDSPAEDADGAGMSLSTSTALARVGRGCLLALPLAGAGAAAWVGRSDYHKVRQELRLARVRLALDHMNHQREVNRTAGQRG-----VERPTRPTLDTSTARYYAGALLADSGVLAAHLVAAYGLYRGWDPEPIVNAEIASLVGAVLSTGGGVRGEYLIAARKAAQ 696
            AA   R  LRR     S  ++  SP   + + +Q+R LHYTR          ST     D + +A  +  P +GT  AA         G   +L   TA AR GRGCL+ALPLAG G +AW   +DY +VR EL+LARV LAL  M++QR+  R  G  G         TRPT D S AR ++ AL+AD+GVL  HL+AAYGL+ GWDP+PIVNAEI +LV AV+STGGG+RGEYL A R AA+
Sbjct:   10 AAXXARLFLRRAAAVNSSHLRPSSPTGASISQQQARTLHYTRCRSLSGSDKASTTSSSDDKDADATAQRAPNTGTPPAA--------GGIFGNLPARTAAARAGRGCLIALPLAGIGFSAWTCVTDYRRVRHELKLARVGLALAEMSYQRDAGRK-GDGGXXXXDANSATRPTFDASPARSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANRNAAE 244
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BLAST of mRNA_H-canaliculatus_M_contigs7998.2.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN63_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 1.030e-43
Identity = 107/241 (44.40%), Postives = 137/241 (56.85%), Query Frame = 1 
Query:   22 AAACGRSCLRRF----SERVQGPSPFSGAKTHRQSRALHYTR----------STLKDYGDTEQNANMRAGPESGTTDAAPDSPAEDADGAGMSLSTSTALARVGRGCLLALPLAGAGAAAWVGRSDYHKVRQELRLARVRLALDHMNHQREVNRTAGQRGV------ERPTRPTLDTSTARYYAGALLADSGVLAAHLVAAYGLYRGWDPEPIVNAEIASLVGAVLSTGGGVRGEYLIAAR 684
            A A  R  LRR     S  ++ PS    + + +Q+R LHYT+          ST+    D + +A  +  P +GT  AA         G   +L   TA AR GRGCL+ALP+ G G +AW   +DY +VR EL+ A V LAL  M+ QRE  R                TRPTLD S  R ++ AL+AD+GVL  HL+AAYGL+ GWDP+PIVNAEI +LV AV+STGGG+RGEYL A R
Sbjct:   36 AVAAARVFLRRAAAINSSHLRPPSLTGASISQQQARTLHYTQCRSLSGSDKASTMNSRDDKDADATAQTAPNTGTPPAA--------GGIFGNLPARTAAARAGRGCLIALPIVGIGFSAWTCVTDYRRVRHELKRACVGLALAEMSFQREAGRKGDSXXXXXXXXXNSATRPTLDASPVRSFSVALVADAGVLGFHLLAAYGLWHGWDPDPIVNAEIGNLVAAVVSTGGGLRGEYLAANR 268
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7998.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized6.190e-4947.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.030e-4344.40protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7998contigH-canaliculatus_M_contigs7998:3999..4769 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Model size771
Hectar predicted targeting categorymitochondrion
Exons1
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-10_004760.1
Cds size771
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854129.6688743-CDS-H-canaliculatus_M_contigs7998:3998..47691696854129.6688743-CDS-H-canaliculatus_M_contigs7998:3998..4769Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7998 3999..4769 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7998.2.1prot_H-canaliculatus_M_contigs7998.2.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7998 3999..4769 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7998.2.1

>prot_H-canaliculatus_M_contigs7998.2.1 ID=prot_H-canaliculatus_M_contigs7998.2.1|Name=mRNA_H-canaliculatus_M_contigs7998.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=257bp
MARLGCLAAACGRSCLRRFSERVQGPSPFSGAKTHRQSRALHYTRSTLKD
YGDTEQNANMRAGPESGTTDAAPDSPAEDADGAGMSLSTSTALARVGRGC
LLALPLAGAGAAAWVGRSDYHKVRQELRLARVRLALDHMNHQREVNRTAG
QRGVERPTRPTLDTSTARYYAGALLADSGVLAAHLVAAYGLYRGWDPEPI
VNAEIASLVGAVLSTGGGVRGEYLIAARKAAQESDNGSSGDGGSRGASTG
GGGAGGG
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mRNA from alignment at H-canaliculatus_M_contigs7998:3999..4769-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7998.2.1 ID=mRNA_H-canaliculatus_M_contigs7998.2.1|Name=mRNA_H-canaliculatus_M_contigs7998.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=771bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7998:3999..4769- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCGGCTTGGTTGCCTTGCCGCTGCGTGCGGCCGTTCGTGTCTGAG
ACGCTTCTCCGAGAGGGTTCAAGGACCGTCACCCTTTTCTGGTGCAAAGA
CTCACCGGCAGAGTCGAGCTCTTCACTACACCAGGAGCACCTTGAAGGAT
TATGGCGACACAGAACAGAACGCGAACATGAGGGCCGGCCCAGAGAGCGG
GACAACCGACGCCGCGCCGGATTCCCCGGCCGAGGATGCAGATGGTGCAG
GGATGAGCTTATCCACTAGTACGGCACTCGCCCGAGTTGGTCGCGGATGC
CTACTAGCTTTGCCTCTTGCCGGCGCGGGGGCCGCAGCTTGGGTCGGTAG
ATCCGACTACCACAAAGTCCGCCAGGAGCTGAGGCTGGCACGAGTCCGGC
TGGCACTCGATCACATGAACCACCAGCGAGAAGTCAACCGGACGGCGGGA
CAGAGGGGCGTAGAACGACCGACCCGGCCGACTCTGGACACCTCCACCGC
GCGCTACTACGCTGGGGCTTTGCTGGCAGACTCGGGTGTGCTCGCCGCTC
ACCTGGTGGCGGCGTATGGTTTATACCGCGGGTGGGACCCGGAGCCCATC
GTGAACGCCGAGATTGCGAGCCTCGTCGGGGCCGTGCTGTCGACAGGAGG
GGGTGTGCGGGGGGAGTATCTAATTGCCGCCCGTAAGGCTGCGCAGGAGT
CGGACAATGGGAGCAGCGGCGATGGTGGCAGTCGCGGCGCTAGTACCGGC
GGGGGTGGTGCCGGCGGCGGT
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7998:3999..4769-

>mRNA_H-canaliculatus_M_contigs7998.2.1 ID=mRNA_H-canaliculatus_M_contigs7998.2.1|Name=mRNA_H-canaliculatus_M_contigs7998.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=771bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7998:3999..4769- (Hapterophycus canaliculatus Oshoro7m male)
ATGGCTCGGCTTGGTTGCCTTGCCGCTGCGTGCGGCCGTTCGTGTCTGAG
ACGCTTCTCCGAGAGGGTTCAAGGACCGTCACCCTTTTCTGGTGCAAAGA
CTCACCGGCAGAGTCGAGCTCTTCACTACACCAGGAGCACCTTGAAGGAT
TATGGCGACACAGAACAGAACGCGAACATGAGGGCCGGCCCAGAGAGCGG
GACAACCGACGCCGCGCCGGATTCCCCGGCCGAGGATGCAGATGGTGCAG
GGATGAGCTTATCCACTAGTACGGCACTCGCCCGAGTTGGTCGCGGATGC
CTACTAGCTTTGCCTCTTGCCGGCGCGGGGGCCGCAGCTTGGGTCGGTAG
ATCCGACTACCACAAAGTCCGCCAGGAGCTGAGGCTGGCACGAGTCCGGC
TGGCACTCGATCACATGAACCACCAGCGAGAAGTCAACCGGACGGCGGGA
CAGAGGGGCGTAGAACGACCGACCCGGCCGACTCTGGACACCTCCACCGC
GCGCTACTACGCTGGGGCTTTGCTGGCAGACTCGGGTGTGCTCGCCGCTC
ACCTGGTGGCGGCGTATGGTTTATACCGCGGGTGGGACCCGGAGCCCATC
GTGAACGCCGAGATTGCGAGCCTCGTCGGGGCCGTGCTGTCGACAGGAGG
GGGTGTGCGGGGGGAGTATCTAATTGCCGCCCGTAAGGCTGCGCAGGAGT
CGGACAATGGGAGCAGCGGCGATGGTGGCAGTCGCGGCGCTAGTACCGGC
GGGGGTGGTGCCGGCGGCGGT
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