mRNA_H-canaliculatus_M_contigs7947.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7947.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7947.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7947.1.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2M1_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.800e-11
Identity = 33/34 (97.06%), Postives = 33/34 (97.06%), Query Frame = 1 
Query:    1 EKWGRLRTLRNDVNKALEQARGAKALGSSLEGQA 102
            EKWGRLRTLRNDVNKALEQARGAK LGSSLEGQA
Sbjct:  925 EKWGRLRTLRNDVNKALEQARGAKVLGSSLEGQA 958
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BLAST of mRNA_H-canaliculatus_M_contigs7947.1.1 vs.
Match: Isoleucine--tRNA (ligase n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A6H2NJP7_9CYAN)

HSP 1 Score: 46.6 bits (109), Expect = 8.210e-5
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 EKWGRLRTLRNDVNKALEQARGAKALGSSLEGQA 102
            E+W +LRT+R +VNK LEQAR AK +GSSLE +A
Sbjct:  821 ERWSQLRTIRQEVNKVLEQARSAKDIGSSLEAKA 854
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7947.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Isoleucine--tRNA1.800e-1197.06ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L... [more]
Isoleucine--tRNA8.210e-564.71ligase n=2 Tax=Pseudanabaenales TaxID=2881377 RepI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7947contigH-canaliculatus_M_contigs7947:11..112 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog272123.Anacy_3621
Preferred nameileS
PFAMsAnticodon_1,tRNA-synt_1,zf-FPG_IleRS
Model size102
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00055,RC00523
KEGG koko:K01870
KEGG ReactionR03656
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue4.72e-05
EggNOG OGsCOG0060@1|root,COG0060@2|Bacteria,1G0QC@1117|Cyanobacteria,1HJU3@1161|Nostocales
EC6.1.1.5
Descriptionamino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Cds size102
COG categoryJ
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854126.8398159-CDS-H-canaliculatus_M_contigs7947:10..1121696854126.8398159-CDS-H-canaliculatus_M_contigs7947:10..112Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7947 11..112 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7947.1.1prot_H-canaliculatus_M_contigs7947.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7947 11..112 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7947.1.1

>prot_H-canaliculatus_M_contigs7947.1.1 ID=prot_H-canaliculatus_M_contigs7947.1.1|Name=mRNA_H-canaliculatus_M_contigs7947.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=34bp
EKWGRLRTLRNDVNKALEQARGAKALGSSLEGQA
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mRNA from alignment at H-canaliculatus_M_contigs7947:11..112+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7947.1.1 ID=mRNA_H-canaliculatus_M_contigs7947.1.1|Name=mRNA_H-canaliculatus_M_contigs7947.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=102bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7947:11..112+ (Hapterophycus canaliculatus Oshoro7m male)
GAGAAGTGGGGGCGTCTCCGGACCCTCAGGAACGACGTCAACAAGGCGCT
GGAGCAAGCGCGAGGCGCGAAGGCCTTGGGGTCGTCCCTCGAGGGGCAGG
CG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7947:11..112+

>mRNA_H-canaliculatus_M_contigs7947.1.1 ID=mRNA_H-canaliculatus_M_contigs7947.1.1|Name=mRNA_H-canaliculatus_M_contigs7947.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=102bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7947:11..112+ (Hapterophycus canaliculatus Oshoro7m male)
GAGAAGTGGGGGCGTCTCCGGACCCTCAGGAACGACGTCAACAAGGCGCT
GGAGCAAGCGCGAGGCGCGAAGGCCTTGGGGTCGTCCCTCGAGGGGCAGG
CG
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