mRNA_H-canaliculatus_M_contigs7935.2.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7935.2.1 vs.
Match: BRCT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGY7_ECTSI) HSP 1 Score: 266 bits (679), Expect = 6.120e-75 Identity = 338/732 (46.17%), Postives = 395/732 (53.96%), Query Frame = 1
Query: 1 GDAGGVVEGRAGAASPGR-QRPTFDDLNDPVFRARMKARAKAAK------------KAAAANSGGAE------KLEEKSHQARWMGEPGCGQ--KQSGGGDGERR--LGDGGWMSSRRRDWCLDDVHFPATSKSGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTPPVDAGNEQLGAGATAPGAARAAAAAADPHSGRCTKRGAARGGGIGXXXXXXXXXDGVG--GGDRPRRQDGVGPRSHAKKKIRGGGEGGGKDAPVDLPESGRRSXXXXXXXXXXXXXXXXXXXVEETMAAPANPNKPQRKASASVRFRVTDETSASGEERSAKKCSRRRRCGPQPSTMDKSRVLVRAQQQQRGRCPRGKEMLRQANALQVERIGVADRARSPEAPAEGIRD------------RSPTFSGLGFVLVGLPSKTRREMEDAIVVGAGRVLEDMEPQPRERCARLLPDGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPTASRLPGYVHAIATGAPLLHHLWVSDSAAEARPLPAAPYLLPGAREASKRRQALAGXXXXXXXXXXXXXXXXXXXXXXXX---KVCTRTGTPLMGMAIAVAHPSMATCERWARVLSAAGAETVRRVSGE-LLLPDEGKEEARAAVMSSSPSKNTRSCRKTARAXXXXXXXXRSFFIAKLAGLDCVLCDFPGAWS 2073
GD GG V A + R Q PT D LNDPVFR RMKAR +AAK A+ N GG+ + +++ HQ W+ + G G K+ GGG E+R +G GWMSSRR+DW LDDV PA G G+ XXXXXXXXXXXXXXXXXXXXXXXX PT E+L T P + XXXXXXXXX G G GG RPR GVGPRSHAKKK RG EG G+DA + ++T+ + +P + ++K S SVR R G AKKC R++R + + S V A+Q R PRG++MLRQA+ V+ G A A +P E +RD R F GL VLVGLP RE++ IV GRVLED+ P L AGA XXXXXXXXXXXXXXXXXXXXXXXXXXXXX VSVP+ASRLP YV AIATG PLLHHLWVSDSAAEARPLPA+PYLLPGAREAS+ XXXXXXXXXXXXXXXXX K ++TGTPLMGMAI VAHPS TCERWA+VL AAGA+TV RV+G+ LL+ +EE +SSPS+ T SC + R S +LAGLDCVLCDFPGAW+
Sbjct: 7 GDGGGAVVPEARDCTRDRCQEPTADQLNDPVFRGRMKARTRAAKAXXXXXXXSIGGNPASGNGGGSALTGARCQPDKRIHQVGWVDDVGRGLQGKRGGGGGVEQRQAVGFNGWMSSRRQDWGLDDVGLPAAQSRGVGSAAPSASRLSRSKTXXXXXXXXXXXXXXXXXXXXXXXXARAK----------PTA------ERL----TGPSLGGKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGCGCNGGTRPR-SIGVGPRSHAKKKSRGNKEGVGEDA---------GAVAAIPAVPAAAVGSADSTRADKTLTSSPSPRQ-RKKTSGSVRCREVSHEGGRGIP--AKKCCRQQRARSSAAAVAVSPVTSAARQHHRSHGPRGEKMLRQAS---VQAAGTA--AAAPTPTTENVRDSPAAAAAATAAGRIGPFFGLSLVLVGLPDDVHREVDRTIVACGGRVLEDLPPPKTRGGLALRRPAAGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVVV----------VSVPSASRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRXXXXXXXXXXXXXXXXXXXXXXXXGHKASHVALAKAVSKTGTPLMGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRVTGDPLLVLLAPREETAVGTRTSSPSRGTWSCSRGRRTAGASSSSSSSLQAEQLAGLDCVLCDFPGAWN 690
BLAST of mRNA_H-canaliculatus_M_contigs7935.2.1 vs.
Match: BRCT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L777_9PHAE) HSP 1 Score: 241 bits (615), Expect = 1.720e-63 Identity = 352/753 (46.75%), Postives = 408/753 (54.18%), Query Frame = 1
Query: 1 GDAGGVVEGRAGAASPGR-QRPTFDDLNDPVFRARMKARAKAAK-----------KAAAANSGGAE------KLEEKSHQARWMGEPGCGQ--KQSGGGDGERRL-GDGGWMSSRRRDWCLDDVHFPATSKSGGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPTPPVDAGNEQLGAGATAPGAARAAAAAADPHSGRCTKRGAARGGGIGXXXXXXXXXDGVGGGD-------------------------RPRRQDGVGPRSHAKKKIRGGGEGGGKDAPVDLPESGRRSXXXXXXXXXXXXXXXXXXXVEETMAAPANPNKPQRKASASVRFRVTDETSASGEERSAKKCSRRRRCGPQPSTMDKSRVLVRAQQQQRGRCPRGKEMLRQANALQVERIGVADRARSPEAPAEGIRD-----------RSPTFSGLGFVLVGLPSKTRREMEDAIVVGAGRVLEDMEPQPRERCARLLPDGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPTASRLPGYVHAIATGAPLLHHLWVSDSAAEARPLPAAPYLLPGAREASKRRQALAGXXXXXXXXXXXXXXXXXXXXXXXX---KVCTRTGTPLMGMAIAVAHPSMATCERWARVLSAAGAETVRRVSGE--LLLPDEGKEEARAAVMSSSPSKNTRSCRKTARAXXXXXXXXRSFFIAKLAGLDCVLCDFPGAWS 2073
GD GG V A + R Q+ T D LNDPVFR RMK R +AA + N GG+ + + + HQA W+ + G GQ K+ GG +R+ G GWMSSRR+DW LDDV PA G + XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A+AA A P + T G + GG GXXXXXXXXX RPR GVGPRSHAKKK RG EG +DA + XXXXXXXXX ++T+ + +P P++K S SVR R G AKKC R++R M S V A+Q R R PRG++MLRQA+ V+ G A A +P AE +RD RS GL VLVGLP R++E IV G GRVL+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVP+A RLP YV AIATG PLLHHLWVSDSAAEARPLPA+PYLLPGAREAS+R XXXXXXXXXX K ++TGTPL+GMAI VAHPS TCERWA+VL AAGA+TV R++G+ LLLP + K A +SSPS+ TRSC + R S +LAGLDCVLCDFPGAW+
Sbjct: 2192 GDGGGAVFPEARDCTRDRCQKATADQLNDPVFRGRMKVRTRAANAXXXXXXSTCGNTVSGNGGGSALTGARCQPDRRIHQAGWVDDVGRGQQGKRGRGGVEQRQAAGFNGWMSSRRQDWGLDDVGLPAAQSRGAASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------------------------------------ASAARAKPTAECFT--GPSLGGKSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRPRSV-GVGPRSHAKKKSRGNKEGVREDA---------GAVAAXXXXXXXXXGSADRTRADKTLTSSPSPG-PRQKTSGSVRCREVSHEGGRGIP--AKKCCRQQRATXXXXAMAVSPVTSAARQHHRSRGPRGEKMLRQAS---VQAAGTA--AAAPTPTAENVRDSPAAAXXXXAGRSGPLFGLSLVLVGLPDDVHRDVERTIVAGGGRVLDXXXXXXXXXXXXXX----------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVPSAFRLPRYVLAIATGTPLLHHLWVSDSAAEARPLPASPYLLPGAREASRRXXXXXXXXXXXXXXXXATAKAGGSHKVSRAALAKAVSKTGTPLLGMAIGVAHPSPTTCERWAQVLRAAGAQTVLRITGDPLLLLPPQEKT---ADWTTSSPSRGTRSCSRGRRTAGASSSSSSSLQAGQLAGLDCVLCDFPGAWN 2870 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7935.2.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7935.2.1 >prot_H-canaliculatus_M_contigs7935.2.1 ID=prot_H-canaliculatus_M_contigs7935.2.1|Name=mRNA_H-canaliculatus_M_contigs7935.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=723bp GDAGGVVEGRAGAASPGRQRPTFDDLNDPVFRARMKARAKAAKKAAAANSback to top mRNA from alignment at H-canaliculatus_M_contigs7935:2762..5017+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7935.2.1 ID=mRNA_H-canaliculatus_M_contigs7935.2.1|Name=mRNA_H-canaliculatus_M_contigs7935.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=2256bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7935:2762..5017+ (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7935:2762..5017+ >mRNA_H-canaliculatus_M_contigs7935.2.1 ID=mRNA_H-canaliculatus_M_contigs7935.2.1|Name=mRNA_H-canaliculatus_M_contigs7935.2.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=2169bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7935:2762..5017+ (Hapterophycus canaliculatus Oshoro7m male)back to top |