mRNA_H-canaliculatus_M_contigs7914.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYP1_9PHAE) HSP 1 Score: 207 bits (528), Expect = 2.890e-54 Identity = 248/726 (34.16%), Postives = 315/726 (43.39%), Query Frame = 1
Query: 10 TKGGSLCIAVQFTGPPPVEGPAGLMGNLLQGTFVAANPVQLGRARKRKVWPGASYTASTAVSAFASAPSSSGNLGANYCNALKATEYDTASMDSGSTSNASSSARYGYEGTGFS---------------TSSIAPGQPFFSGASSTXXXXXXXXXXXXXXXXXNLLDDSREDCKGSASYPNKRSYPSSPLHQRQNAGCRRGNIGDDIFAAFG---GMRLNLSKCAAAAADTTADGAAPIAA--ADXXXXXXDPPAALQLGRSCSMMTNAGDDLPKWDDVVR-----------------------------------RAATTTDVSVASTDMP--PSGRSFNEGRSKVMSQEEFVSLFAGAVPTTSGVDSVAAXXXXXXXXXXXXXXXXXXXXGVIVSEDGLWEGAPTEAENL-FCAPAFGRHTSFSWGL----HPAHAATAALVATDDDISDHKVTS-GDSRCVSNRRHQHQSXXXXXXXXXXXXXXXXWYIEGQRRTNAAIAAAAIGGINLPPVGNEISFRWHEE------------------------------ECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFP--AAFRHRQTPRP--------CHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATG--------------NDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPT 1836
T GG CI +QFTGP P+EGPAGL+ +LL+ TFV+A+PVQL R RKRK PG + + G + ALK T DTAS +G + ++ + S + XXXXXXXXXXXXXXXXX + S P SP ++Q+A I DDI AFG G + L +AP+ A AD PP L GRSCS+MT G+DLP+WDDV+R + T D + AS P G S++E R+ VMSQEE VSLFA A T+ XXXX + G WEGAP + + FC A RH S +W L + AA A VA ++ +DH+ S C++ XXXXXX WY EG + A A GG+ +PP G+ I+F W E+ ECDFDG+C A S PP PP+ ++SFFP +A T RP C +F GL S +L D+TV A F VDP ++VER A L +D A G RA AAV +PSI EIWPEVYK +IR +EVDMVVE+RSS G ++YTGPT
Sbjct: 80 THGGRACIEIQFTGPQPIEGPAGLLCSLLEATFVSAHPVQLDRGRKRKTRPGXXXXXXXXXXXXXXXLAETSEEGCSRSVALKTTAADTASATAGDXXXXXXXXXXXXXXXXXXXXXXXXXXXXKHEDLSDYVSDTTSYASSRTXXXXXXXXXXXXXXXXXXXXXXXXXXDATWADVGELPSTSSPFSPNQEQQHADDMV-VIDDDICTAFGVAFGGQGGLIXXXXXXXXXXXSLSAPVPATTADFPASSTSPPPCL--GRSCSVMTAEGNDLPRWDDVIRGVESPPSSGGSIDEADASGDRLPAAAAPPPLGARPASGDTDDPAPASASCPGLARGTSYDECRAGVMSQEEAVSLFAAAGAATAEXXXXXXXXXXS-------------------AGHGQWEGAPDDNPDAPFCPVALERHCSSTWALLDPTNAGAAAAAVTVAGEEGATDHQRASIVPDPCLA------------AESXXXXXXAIMWYGEGPHHS----AVPAGGGLEMPPPGDSIAFGWCEQTEAAVNEGTKFLSYHRVTHAHAPPCSLTIQECDFDGNCAATPSK-------PPRGLPPTAATSFFPDPSAAVAACTSRPSSNYLNNRCRLAFLGLES------ELRDVTVCARFSVDPASRVERFAS-LPLDGAAGXXXXXDPAGVVGGRRGRADAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSEGNILYTGPT 753
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK7_ECTSI) HSP 1 Score: 178 bits (451), Expect = 2.120e-44 Identity = 208/693 (30.01%), Postives = 259/693 (37.37%), Query Frame = 1
Query: 10 TKGGSLCIAVQFTGPPPVEGPAGLMGNLLQGTFVAANPVQLGRARKRKVWPGASYTASTAVSAFASAPSSSGNLGANYCNALKATEYDTASMDSGSTSNASSSARYGYEGTGFSTSSIAPGQPFFSGASSTXXXXXXXXXXXXXXXXXNLLDDSREDCKGSASYPNKRSYPSSPLHQRQNAGCRRGNIGDDIFAAFGGMRLNLSK-CAAAAADTTADGAAPIAAADXXXXXXDPPAALQLGRSCSMMTNAGDDLPKWDDV--------------------VRRAATTTDVSVASTDMPPS---GRSFNEGRSKVMSQEEFVSLFAGAVPTTSGVDSVAAXXXXXXXXXXXXXXXXXXXXGVIVSEDGLWEGAP-TEAENLFCAPAFGRHTSFSWGL-HPAHA---ATAALVATDDDISDHKVTS-GDSRCV---SNRRHQHQSXXXXXXXXXXXXXXXXWYIEGQRRTNAAIAAAAIGGINLPPVGNEISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFP--------------------AAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATG----------------NDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPTQTVSFA-SVLRKSSP 1878
T+GG CI +QFTGP P+EGPAGLM NLLQ TFV+A+PVQL R RKRK PG XXXXXXXXX +LS A AD A A+P PP LGRSCS+MT G+DLP D+ R A+ TD S+ P G S++E R+ MSQEE VSLFA T+ A+ + D WE AP + + FC A RH S +W L P HA A A VA ++ DH+ S C+ S+ Q Q WY EG A A GG+ LPP G+ I+F W E+ECDFDG+ A S A ++P P+ ++SFFP C ++F GL S I D TV A F VDP ++VER A L +D A G R AAV +PSI EIWPEVYK +IR +EVDMVVE+RSS G ++YTGPT +++ S R S+P
Sbjct: 92 TQGGRACIEIQFTGPQPIEGPAGLMCNLLQATFVSAHPVQLDRGRKRKTRPG---------------------------------------------------------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSLSAPVPATTADFPASSASP------------PPC---LGRSCSVMTAEGNDLPSIDEADASGDRLPAAXXXXXXXXFGARPASGDTDDPAPSSASCPGLARGTSYDECRAGFMSQEEAVSLFAATGAATAEAKPPAST-------------------AAAAAGDDQWERAPGDDPDGPFCPLALERHCSSTWALLDPTHAGAPAAAVTVAGEEGAPDHRRASIVPDPCLAAESSLEEQQQPTM--------------WYGEGPHHP----AVPAGGGLELPPAGDTIAFGWCEQECDFDGNYAARPSKTARVLP-------PTAATSFFPDPSAVAVAXXXXXXXXXXXXXXXXSNSLNNRCRFAFLGLESEIR------DFTVCARFSVDPASRVERFAS-LPLDGAAGXXXXXXXDPAGAVGGRRGRVDAAVEFPSIMEIWPEVYKVDNIRVMEVDMVVEVRSSDGNILYTGPTLKITYRRSAARTSAP 631
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZ48_ECTSI) HSP 1 Score: 102 bits (255), Expect = 3.100e-19 Identity = 63/151 (41.72%), Postives = 81/151 (53.64%), Query Frame = 1
Query: 1399 ECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPTQTVSF 1851
ECDF+G T P+ + P P T R CH F+GL + G DL L V AHF VD KV + P+++ + N RA A V YPS++EIWPE+Y T++IR VEVD+VVEIRS SGE Y GP V++
Sbjct: 383 ECDFEGRPTPPTDPKSGEPPIP-------------------SSTDRQCHLVFTGLNNT---GQDLRSLRVTAHFGVDSVHKVGKVTSPIQLGS---NGRAYAGVFYPSMQEIWPELYSTSNIRVVEVDLVVEIRSDSGEYQYVGPQLKVTY 508
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0L1_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 7.480e-12 Identity = 51/169 (30.18%), Postives = 78/169 (46.15%), Query Frame = 1
Query: 1375 ISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGP-LEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTGPTQTVSFASVLRKSSP 1878
++F +ECDFDG A +P S +S+ T +PC F G+ V Y + DL V A F V P + A LE D ++ + YPS+ +IWPEVY ++ VEVDM V++RSS G+ +++ P+ V + ++P
Sbjct: 428 VAFGLLRQECDFDGRSAA-------------AVPAASATSASANGVCASSSTKKPCRLRFKGIEGV---DYGIRDLAVTAQFSVGPPGNLVGTAPTNLEADRNACAGSSSCTITYPSMEDIWPEVYSARSVKVVEVDMTVDVRSSDGKWVHSWPSVKVMYRRARTATTP 580
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL1_ECTSI) HSP 1 Score: 77.8 bits (190), Expect = 9.500e-12 Identity = 54/143 (37.76%), Postives = 69/143 (48.25%), Query Frame = 1
Query: 1396 EECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIY 1824
E+ DF+G P+ S S F AAF ++ H F GL E G L L A F +P K ER GPL+ A N R AV YPS+ E+WPEVY + IR V+VDM+VE+RS G+ +Y
Sbjct: 207 EDFDFEGRTIEPNKP----------------SDSPFAAAFSVPRSDDEQHLVFIGLG---ETGRPLPTLAARAQFSANPGRKAERMVGPLQ---AGSNGRVYGAVQYPSMAELWPEVYNSTAIRVVKVDMLVEVRSRYGDSLY 327
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ42_9PHAE) HSP 1 Score: 75.1 bits (183), Expect = 1.250e-10 Identity = 53/155 (34.19%), Postives = 73/155 (47.10%), Query Frame = 1
Query: 1360 PVGNEISFRWHEEECDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIY 1824
P + + E+ DF+G P+ S S F AA ++ + F GL E G L L A F +P + ER GPL+ A + N R AV YPS+ E+WPEVY + IR V+VDM+VE+RS SG+ +Y
Sbjct: 277 PTVDNVFIESLREDFDFEGRTIEPNKP----------------SGSPFAAALSVPRSDDEQYLVFIGLG---ETGRPLPALAARAQFSANPGRQAERMVGPLQARAGS-NGRVYGAVQYPSMAELWPEVYNSKAIRVVKVDMLVEVRSRSGDSLY 411
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7N4_ECTSI) HSP 1 Score: 65.1 bits (157), Expect = 1.630e-8 Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 1534 RPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSG-EVIYTGP 1833
R H F+GL + G+D L V F VD ++ P++V AA G RA + V YPS+ E+WPE+Y T +RAVEVD+ VE+ S G E Y GP
Sbjct: 81 RDTHVVFTGLN---DTGHDPRGLRVTVIFGVDAVHQIACVTSPIQV-AADG--RAYSRVFYPSLEEVWPELYYTVDVRAVEVDVAVEVLSDDGREFRYVGP 175
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDQ6_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 4.380e-7 Identity = 43/101 (42.57%), Postives = 57/101 (56.44%), Query Frame = 1
Query: 1534 RPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSG-EVIYTGP 1833
R H F+GL + G+D L V F VD ++ P++V AA G RA + V YPS+ ++WPE+Y T +RAVEVD+ VEI S G E Y GP
Sbjct: 259 RDTHVVFTGLHNT---GHDPRGLRVTVIFGVDAVHQIACVTSPVQV-AADG--RAYSRVFYPSLEDVWPELYYTVDVRAVEVDVAVEILSDDGREFRYVGP 353
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6J1_ECTSI) HSP 1 Score: 59.7 bits (143), Expect = 6.540e-7 Identity = 40/143 (27.97%), Postives = 68/143 (47.55%), Query Frame = 1
Query: 1402 CDFDGHCTAPSSTAADMVPTPPLLPPPSLSSSFFPAAFRHRQTPRPCHYSFSGLRSVIEQGYDLVDLTVFAHFFVDPEAKVEREAGPLEVDAATGNDRATAAVAYPSIREIWPEVYKTAHIRAVEVDMVVEIRSSSGEVIYTG 1830
CDF G A + +VP+ +L++ F + H F+GL + G L LT +F ++ + R AGP++V ++R AV YP++ E+WPE+Y+ + V+VD+ + +RS + Y G
Sbjct: 6 CDFHGRAVAHPQES--VVPS-------ALAACFMSGSLEQ-------HLVFTGL---VGAGPHLDYLTTTVYFSINSGRPLARAAGPMQVGE---DERVYVAVKYPTMNELWPEIYQNVAVEVVQVDVFITVRSGHKTIRYPG 126 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7914.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs7914.1.1 >prot_H-canaliculatus_M_contigs7914.1.1 ID=prot_H-canaliculatus_M_contigs7914.1.1|Name=mRNA_H-canaliculatus_M_contigs7914.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=630bp TKTTKGGSLCIAVQFTGPPPVEGPAGLMGNLLQGTFVAANPVQLGRARKRback to top mRNA from alignment at H-canaliculatus_M_contigs7914:2049..5140- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs7914.1.1 ID=mRNA_H-canaliculatus_M_contigs7914.1.1|Name=mRNA_H-canaliculatus_M_contigs7914.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=3092bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7914:2049..5140- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7914:2049..5140- >mRNA_H-canaliculatus_M_contigs7914.1.1 ID=mRNA_H-canaliculatus_M_contigs7914.1.1|Name=mRNA_H-canaliculatus_M_contigs7914.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=1890bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7914:2049..5140- (Hapterophycus canaliculatus Oshoro7m male)back to top |