mRNA_H-canaliculatus_M_contigs78063.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs78063.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs78063.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Desaturase ((Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071 RepID=A0A3D2F895_9RHOB)

HSP 1 Score: 305 bits (782), Expect = 4.930e-103
Identity = 137/167 (82.04%), Postives = 156/167 (93.41%), Query Frame = 1

Query:    1 QMETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            QM+TL + WIAQ+W+RNLVLM LVAG LHWFF++ +GQ  RLKFDPRDLA  GKQFNFGGQV+DNMFWTL+SGVGFWTAYEVL+F+AMANG+AP L+W+ +P+WFCALF+LTPVIISLHFYWIHRALHWGPLY+LAHALHHKNVNVGPWSGLSMHPIEHIAFFSS+L
Sbjct:   17 QMKTLSIGWIAQIWVRNLVLMFLVAGSLHWFFFMRKGQGNRLKFDPRDLAIKGKQFNFGGQVKDNMFWTLSSGVGFWTAYEVLMFYAMANGFAPHLSWAQNPIWFCALFLLTPVIISLHFYWIHRALHWGPLYRLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSIL 183

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BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Desaturase (n=1 Tax=Sulfitobacter sp. JL08 TaxID=2070369 RepID=A0A345R868_9RHOB)

HSP 1 Score: 290 bits (741), Expect = 4.650e-96
Identity = 133/167 (79.64%), Postives = 149/167 (89.22%), Query Frame = 1

Query:    1 QMETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            +METL L WIAQ+WLRN +LM+LVAGGLH +F+  R Q  RLK+DPRDLA  GKQF+FGGQV DNMFW+LTSGVGFWTAYEVL+FHAMANG+APVL WSD+PVWF ALF LTP+ IS HFYWIHRALHWGPLY+L HALHH+NVNVGPWSGLSMHP+EHIAFFSSVL
Sbjct:   70 EMETLALGWIAQIWLRNTILMLLVAGGLHLYFFHHRKQGDRLKYDPRDLATKGKQFSFGGQVCDNMFWSLTSGVGFWTAYEVLMFHAMANGWAPVLLWSDNPVWFVALFFLTPIWISFHFYWIHRALHWGPLYRLVHALHHRNVNVGPWSGLSMHPVEHIAFFSSVL 236

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BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Fatty (acid hydroxylase superfamily protein n=1 Tax=Roseovarius sp. THAF9 TaxID=2587847 RepID=A0A5P9I577_9RHOB)

HSP 1 Score: 280 bits (715), Expect = 4.100e-92
Identity = 125/165 (75.76%), Postives = 143/165 (86.67%), Query Frame = 1

Query:    7 ETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            +TL L WIA +WLRN+VLM LVAGGLHWFFY+ RGQ  RLKFDPRDL R G+QF+ GGQVRDNMFWTLTSGVGFWTAYEV +F AM NG+ P L W+DSPV F  LF+LTPV IS HFYW+HRALHWGPLY++AH+LHH+NVNVGPWSGLSMHP+EH+ FFSS+L
Sbjct:   73 KTLSLDWIAGIWLRNMVLMTLVAGGLHWFFYMRRGQGVRLKFDPRDLMRKGRQFSLGGQVRDNMFWTLTSGVGFWTAYEVGMFWAMGNGWMPALAWADSPVSFVLLFLLTPVWISFHFYWVHRALHWGPLYRIAHSLHHRNVNVGPWSGLSMHPVEHVIFFSSIL 237

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BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Fatty (acid hydroxylase domain-containing protein n=5 Tax=Roseovarius TaxID=74030 RepID=A3SRL7_ROSNI)

HSP 1 Score: 276 bits (707), Expect = 6.710e-91
Identity = 125/165 (75.76%), Postives = 140/165 (84.85%), Query Frame = 1

Query:    7 ETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
             TL L W+A +WLRN+VLM LVAGGLHWFFY+  GQ  RLK+D R L   G+QFNFGGQVRDNMFW+LTSGVGFWT YEVL+F AMANG+AP L+W+ SPVWF  LF LTPV IS HFYWIHRALHWGPLY+LAH LHH+NVNVGPWSGLSMHP+EH+ FFSSVL
Sbjct:   73 RTLSLDWVAAIWLRNMVLMCLVAGGLHWFFYMRHGQGKRLKYDARPLMTKGRQFNFGGQVRDNMFWSLTSGVGFWTGYEVLMFWAMANGWAPHLSWAGSPVWFVLLFPLTPVWISFHFYWIHRALHWGPLYRLAHGLHHRNVNVGPWSGLSMHPVEHLMFFSSVL 237

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BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: sterol (desaturase family protein n=1 Tax=Roseovarius sp. EL26 TaxID=2126672 RepID=UPI000EA22026)

HSP 1 Score: 276 bits (705), Expect = 1.310e-90
Identity = 121/164 (73.78%), Postives = 142/164 (86.59%), Query Frame = 1

Query:   10 TLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            TL   W+  +WLRN++L+ LVAGGLHWFFY+  GQ  RLK+D R L   GKQFNFGGQVRDNMFWTLTSGVGFWTAYEVL+F AM+NG+AP+L WSD+PVWF  +F+LTPV IS HFYW+HRALHWGPLYKLAHALHH+N+NVGPWSGLSMHP+EH+ +FSS+L
Sbjct:   73 TLSFDWVFAIWLRNMILIGLVAGGLHWFFYMRHGQGKRLKYDGRPLMTKGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLMFWAMSNGWAPLLYWSDNPVWFVLVFLLTPVWISFHFYWVHRALHWGPLYKLAHALHHRNINVGPWSGLSMHPVEHLIYFSSIL 236

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BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Sterol (desaturase family protein n=2 Tax=Roseovarius spongiae TaxID=2320272 RepID=A0A3A8B6A7_9RHOB)

HSP 1 Score: 272 bits (696), Expect = 5.170e-89
Identity = 124/165 (75.15%), Postives = 140/165 (84.85%), Query Frame = 1

Query:    7 ETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            +TL   WI  +WLRNLVLM LVAGGLHW+F+ A  Q  RL+FDPR+L   G+QF FGGQVRDNMFWTL SGV FWTAYEVL+F AMANG+APVL W+D+PVWF ALF+LTPV IS HFYWIHRALHW PLY+LAH LHH+NVNVGPWSGLSMHP+EH+ FFSSVL
Sbjct:   90 QTLHWQWIGAIWLRNLVLMSLVAGGLHWYFHAAGRQGKRLRFDPRELMTRGRQFTFGGQVRDNMFWTLASGVSFWTAYEVLMFWAMANGWAPVLAWADNPVWFVALFLLTPVWISFHFYWIHRALHWRPLYRLAHGLHHRNVNVGPWSGLSMHPLEHLFFFSSVL 254

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Sterol (desaturase family protein n=6 Tax=unclassified Boseongicola TaxID=2634418 RepID=A0A6L7LMB2_9RHOB)

HSP 1 Score: 271 bits (694), Expect = 6.490e-89
Identity = 127/165 (76.97%), Postives = 138/165 (83.64%), Query Frame = 1

Query:    7 ETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            ++L   WI  L LRNL LM +VAGGLHWF Y A+ Q  RLKFDPR L   G+QF FGGQVRDNMFWTLTSGVG WTAYEVLLF AM NG APVL WSDSP+WF ALF LTPV ISLHFYWIHRALHWGPLY+LAHALHH+NVNVGPWSGLSMHP+EH+ FFSS+L
Sbjct:   74 KSLSWDWIGALLLRNLALMTIVAGGLHWFLYRAKLQGDRLKFDPRALMVKGRQFTFGGQVRDNMFWTLTSGVGTWTAYEVLLFWAMGNGLAPVLAWSDSPIWFMALFALTPVWISLHFYWIHRALHWGPLYRLAHALHHRNVNVGPWSGLSMHPVEHVLFFSSIL 238

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Fatty (acid hydroxylase superfamily protein n=1 Tax=Roseovarius aestuarii TaxID=475083 RepID=A0A1X7BSW4_9RHOB)

HSP 1 Score: 267 bits (682), Expect = 4.280e-87
Identity = 120/164 (73.17%), Postives = 141/164 (85.98%), Query Frame = 1

Query:   10 TLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            TL   WI  +WLRN+VLM++VAGGLHWFFY  +GQ  RLK+D RDL   G+QF+FGGQVRDNMFW+LTSGVGFWTAYEVLL  A+ NG+APVL ++  PVWF A+F+LTPV IS HFYW+HRALHWGPLY+LAHALHH+NVNVGPWSGLSMHP+EH+ FFSS+L
Sbjct:   75 TLSPGWIIGIWLRNMVLMLMVAGGLHWFFYKRKGQGMRLKYDKRDLMLKGRQFSFGGQVRDNMFWSLTSGVGFWTAYEVLLLWAIGNGWAPVLDFAAHPVWFIAIFLLTPVWISFHFYWVHRALHWGPLYRLAHALHHRNVNVGPWSGLSMHPVEHLIFFSSIL 238

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: sterol (desaturase family protein n=1 Tax=Thalassococcus sp. CAU 1522 TaxID=2851652 RepID=UPI001C39332B)

HSP 1 Score: 264 bits (675), Expect = 4.630e-86
Identity = 124/165 (75.15%), Postives = 138/165 (83.64%), Query Frame = 1

Query:    7 ETLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
             TL   WIA +WLRNLVLM+ VAGGLHWFFY+ RGQ  RLK+D RDL   G+QF+FGGQVRDN+FWTL SGV  WT +E  LF AMANGYAPVLT+ D+PV F ALF+LTPV IS HFYWIHRALHWGPLY+ AHALHH+NVNVGPWSGLSMHPIEH+ FFSSVL
Sbjct:   72 RTLGADWIAAIWLRNLVLMIAVAGGLHWFFYMRRGQGDRLKYDGRDLVAKGRQFSFGGQVRDNVFWTLASGVTVWTGFEAGLFWAMANGYAPVLTFRDNPVRFVALFLLTPVWISFHFYWIHRALHWGPLYRSAHALHHRNVNVGPWSGLSMHPIEHLLFFSSVL 236

[Close]

BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Match: Fatty (acid hydroxylase superfamily protein n=1 Tax=Roseovarius litorisediminis TaxID=1312363 RepID=A0A1Y5RNH1_9RHOB)

HSP 1 Score: 262 bits (670), Expect = 2.570e-85
Identity = 120/164 (73.17%), Postives = 135/164 (82.32%), Query Frame = 1

Query:   10 TLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLARTGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDSPVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSGLSMHPIEHIAFFSSVL 501
            TL   WIA LWLRNLVLM LVAGGLHWFFY+ + Q ++LKFD RDL   G+QF+FGGQVRDNMFWTL SGVGFWTAYEVL+   M NG+ P L   D PVWF ALF+LTP+ IS HFYWIHRALHWGPLY++AHALHH+NVNVGPWSGLSMHP+E   FFSS+L
Sbjct:   72 TLAPGWIAGLWLRNLVLMTLVAGGLHWFFYVRKRQGSKLKFDGRDLMNKGRQFSFGGQVRDNMFWTLVSGVGFWTAYEVLMLWGMGNGWIPSLVIGDHPVWFVALFLLTPLWISFHFYWIHRALHWGPLYRIAHALHHRNVNVGPWSGLSMHPVESFGFFSSIL 235

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs78063.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Desaturase	4.930e-103	82.04	(Fragment) n=1 Tax=Sulfitobacter sp. TaxID=1903071...	[more]
Desaturase	4.650e-96	79.64	n=1 Tax=Sulfitobacter sp. JL08 TaxID=2070369 RepID...	[more]
Fatty	4.100e-92	75.76	acid hydroxylase superfamily protein n=1 Tax=Roseo...	[more]
Fatty	6.710e-91	75.76	acid hydroxylase domain-containing protein n=5 Tax...	[more]
sterol	1.310e-90	73.78	desaturase family protein n=1 Tax=Roseovarius sp. ...	[more]
Sterol	5.170e-89	75.15	desaturase family protein n=2 Tax=Roseovarius spon...	[more]
Sterol	6.490e-89	76.97	desaturase family protein n=6 Tax=unclassified Bos...	[more]
Fatty	4.280e-87	73.17	acid hydroxylase superfamily protein n=1 Tax=Roseo...	[more]
sterol	4.630e-86	75.15	desaturase family protein n=1 Tax=Thalassococcus s...	[more]
Fatty	2.570e-85	73.17	acid hydroxylase superfamily protein n=1 Tax=Roseo...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs78063	contig	H-canaliculatus_M_contigs78063:3..503 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	89187.ISM_11650
PFAMs	FA_hydroxylase
Model size	501
Max annot lvl	28211\|Alphaproteobacteria
Hectar predicted targeting category	signal peptide
Exons	1
Evalue	1.5e-91
EggNOG OGs	COG3000@1\|root,COG3000@2\|Bacteria,1NXAF@1224\|Proteobacteria,2U1E6@28211\|Alphaproteobacteria
Description	sterol desaturase
Cds size	498
COG category	I

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.1297185-CDS-H-canaliculatus_M_contigs78063:2..500	1696854117.1297185-CDS-H-canaliculatus_M_contigs78063:2..500	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs78063 3..500 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854117.1456528-UTR-H-canaliculatus_M_contigs78063:500..503	1696854117.1456528-UTR-H-canaliculatus_M_contigs78063:500..503	Hapterophycus canaliculatus Oshoro7m male	UTR	H-canaliculatus_M_contigs78063 501..503 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs78063.1.1	prot_H-canaliculatus_M_contigs78063.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs78063 3..500 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs78063:3..503-
coding sequence from alignment at H-canaliculatus_M_contigs78063:3..503-

protein sequence of mRNA_H-canaliculatus_M_contigs78063.1.1

>prot_H-canaliculatus_M_contigs78063.1.1 ID=prot_H-canaliculatus_M_contigs78063.1.1|Name=mRNA_H-canaliculatus_M_contigs78063.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=166bp
METLQLSWIAQLWLRNLVLMVLVAGGLHWFFYIARGQAARLKFDPRDLAR
TGKQFNFGGQVRDNMFWTLTSGVGFWTAYEVLLFHAMANGYAPVLTWSDS
PVWFCALFVLTPVIISLHFYWIHRALHWGPLYKLAHALHHKNVNVGPWSG
LSMHPIEHIAFFSSVL

mRNA from alignment at H-canaliculatus_M_contigs78063:3..503-

Legend: UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs78063.1.1 ID=mRNA_H-canaliculatus_M_contigs78063.1.1|Name=mRNA_H-canaliculatus_M_contigs78063.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78063:3..503- (Hapterophycus canaliculatus Oshoro7m male)
CAGATGGAAACACTGCAATTGAGCTGGATCGCGCAACTCTGGCTGCGCAA
TCTGGTGTTGATGGTGCTGGTTGCGGGGGGCTTGCACTGGTTTTTCTACA
TCGCGCGCGGGCAGGCGGCGCGGCTGAAATTTGATCCCCGCGATCTAGCG
CGCACAGGCAAGCAGTTCAATTTTGGCGGCCAAGTGCGCGACAACATGTT
TTGGACGCTGACCAGTGGTGTCGGGTTTTGGACCGCCTACGAGGTGCTGC
TGTTTCACGCGATGGCGAACGGCTATGCGCCGGTTTTGACGTGGTCTGAT
AGCCCGGTTTGGTTCTGCGCGCTGTTCGTGCTGACGCCGGTTATTATCTC
GTTGCATTTCTACTGGATCCATCGCGCTTTGCATTGGGGTCCGCTGTACA
AGCTGGCCCATGCGCTGCACCACAAGAACGTCAATGTTGGTCCTTGGTCA
GGGCTATCGATGCATCCGATTGAACACATTGCGTTCTTTTCGTCGGTCTT
G

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78063:3..503-

>mRNA_H-canaliculatus_M_contigs78063.1.1 ID=mRNA_H-canaliculatus_M_contigs78063.1.1|Name=mRNA_H-canaliculatus_M_contigs78063.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=498bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78063:3..503- (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAACACTGCAATTGAGCTGGATCGCGCAACTCTGGCTGCGCAATCT
GGTGTTGATGGTGCTGGTTGCGGGGGGCTTGCACTGGTTTTTCTACATCG
CGCGCGGGCAGGCGGCGCGGCTGAAATTTGATCCCCGCGATCTAGCGCGC
ACAGGCAAGCAGTTCAATTTTGGCGGCCAAGTGCGCGACAACATGTTTTG
GACGCTGACCAGTGGTGTCGGGTTTTGGACCGCCTACGAGGTGCTGCTGT
TTCACGCGATGGCGAACGGCTATGCGCCGGTTTTGACGTGGTCTGATAGC
CCGGTTTGGTTCTGCGCGCTGTTCGTGCTGACGCCGGTTATTATCTCGTT
GCATTTCTACTGGATCCATCGCGCTTTGCATTGGGGTCCGCTGTACAAGC
TGGCCCATGCGCTGCACCACAAGAACGTCAATGTTGGTCCTTGGTCAGGG
CTATCGATGCATCCGATTGAACACATTGCGTTCTTTTCGTCGGTCTTG