mRNA_H-canaliculatus_M_contigs78060.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs78060.1.1
Unique NamemRNA_H-canaliculatus_M_contigs78060.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs78060.1.1 vs.
Match: Bifunctional (hemolysin/adenylate cyclase n=1 Tax=Ascidiaceihabitans donghaensis TaxID=1510460 RepID=A0A2R8BG65_9RHOB)

HSP 1 Score: 75.9 bits (185), Expect = 5.250e-13
Identity = 39/39 (100.00%), Postives = 39/39 (100.00%), Query Frame = 1 
Query:  385 DVGTGGADADQFIVASDTTGAVTITDYNGAEDSLVVQAL 501
            DVGTGGADADQFIVASDTTGAVTITDYNGAEDSLVVQAL
Sbjct:  367 DVGTGGADADQFIVASDTTGAVTITDYNGAEDSLVVQAL 405
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs78060.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Bifunctional5.250e-13100.00hemolysin/adenylate cyclase n=1 Tax=Ascidiaceihabi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs78060contigH-canaliculatus_M_contigs78060:3..503 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Model size501
Hectar predicted targeting categoryother localisation
Exons1
Cds size501
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854117.0594232-CDS-H-canaliculatus_M_contigs78060:2..5031696854117.0594232-CDS-H-canaliculatus_M_contigs78060:2..503Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs78060 3..503 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs78060.1.1prot_H-canaliculatus_M_contigs78060.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs78060 3..503 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs78060.1.1

>prot_H-canaliculatus_M_contigs78060.1.1 ID=prot_H-canaliculatus_M_contigs78060.1.1|Name=mRNA_H-canaliculatus_M_contigs78060.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=167bp
DDNDTITGGAGADLLDGGNGDDDIMGGDDNDTLLGGIGADTLAGDLGDDS
IDAGAGDDSADGGAGADTVIGGDGNDTLAGGEGADLLQGGEGDDALYGTT
STQTAASDASADTLTGGAGADLLFLGAGDVGTGGADADQFIVASDTTGAV
TITDYNGAEDSLVVQAL
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mRNA from alignment at H-canaliculatus_M_contigs78060:3..503-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs78060.1.1 ID=mRNA_H-canaliculatus_M_contigs78060.1.1|Name=mRNA_H-canaliculatus_M_contigs78060.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78060:3..503- (Hapterophycus canaliculatus Oshoro7m male)
GACGACAATGACACGATCACCGGTGGTGCTGGCGCGGATCTGTTGGACGG
TGGCAACGGCGACGATGACATCATGGGCGGCGACGACAACGACACGTTGC
TTGGCGGTATCGGCGCGGACACACTTGCGGGTGATCTGGGCGACGACAGC
ATTGATGCGGGCGCAGGTGATGACAGCGCAGATGGCGGTGCCGGCGCAGA
CACTGTGATAGGTGGAGATGGCAATGATACGCTGGCCGGTGGTGAAGGCG
CGGATCTTTTGCAGGGCGGTGAAGGCGACGACGCACTTTATGGCACAACA
AGCACGCAAACAGCGGCATCTGACGCCTCTGCAGACACATTGACGGGTGG
CGCGGGGGCAGACTTGTTGTTCCTGGGGGCTGGCGATGTTGGCACCGGCG
GCGCCGATGCAGATCAATTCATTGTTGCCAGCGATACGACGGGTGCTGTG
ACAATCACCGACTACAACGGCGCGGAAGACAGCCTTGTTGTGCAAGCATT
G
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs78060:3..503-

>mRNA_H-canaliculatus_M_contigs78060.1.1 ID=mRNA_H-canaliculatus_M_contigs78060.1.1|Name=mRNA_H-canaliculatus_M_contigs78060.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=501bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs78060:3..503- (Hapterophycus canaliculatus Oshoro7m male)
GACGACAATGACACGATCACCGGTGGTGCTGGCGCGGATCTGTTGGACGG
TGGCAACGGCGACGATGACATCATGGGCGGCGACGACAACGACACGTTGC
TTGGCGGTATCGGCGCGGACACACTTGCGGGTGATCTGGGCGACGACAGC
ATTGATGCGGGCGCAGGTGATGACAGCGCAGATGGCGGTGCCGGCGCAGA
CACTGTGATAGGTGGAGATGGCAATGATACGCTGGCCGGTGGTGAAGGCG
CGGATCTTTTGCAGGGCGGTGAAGGCGACGACGCACTTTATGGCACAACA
AGCACGCAAACAGCGGCATCTGACGCCTCTGCAGACACATTGACGGGTGG
CGCGGGGGCAGACTTGTTGTTCCTGGGGGCTGGCGATGTTGGCACCGGCG
GCGCCGATGCAGATCAATTCATTGTTGCCAGCGATACGACGGGTGCTGTG
ACAATCACCGACTACAACGGCGCGGAAGACAGCCTTGTTGTGCAAGCATT
G
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