mRNA_H-canaliculatus_M_contigs77815.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77815.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77815.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77815.1.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.360e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 REGPARAEVTFATTGYLARLLASNPRVLDSHTHLIIDEV 117
            REGP +AEVTFATTGYLARLLASNP VLDSHTHLIIDEV
Sbjct:  954 REGPPKAEVTFATTGYLARLLASNPGVLDSHTHLIIDEV 992
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BLAST of mRNA_H-canaliculatus_M_contigs77815.1.1 vs.
Match: Helicase (ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 2.370e-14
Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 1 
Query:    1 REGPARAEVTFATTGYLARLLASNPRVLDSHTHLIIDEV 117
            REGP +AEVTFATTGYLARLLASNP VLDSHTHLIIDEV
Sbjct:  802 REGPPKAEVTFATTGYLARLLASNPGVLDSHTHLIIDEV 840
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77815.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.360e-1492.31protein (Fragment) n=1 Tax=Ectocarpus siliculosus ... [more]
Helicase2.370e-1492.31ATP-binding domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77815contigH-canaliculatus_M_contigs77815:391..507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSM0
Preferred nameYTHDC2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,YTH
Model size117
Max annot lvl2759|Eukaryota
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue3.86e-15
EggNOG OGsCOG1643@1|root,KOG0921@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of polysome binding
Cds size117
COG categoryL
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854114.8720665-CDS-H-canaliculatus_M_contigs77815:390..5071696854114.8720665-CDS-H-canaliculatus_M_contigs77815:390..507Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77815 391..507 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77815.1.1prot_H-canaliculatus_M_contigs77815.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77815 391..507 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77815.1.1

>prot_H-canaliculatus_M_contigs77815.1.1 ID=prot_H-canaliculatus_M_contigs77815.1.1|Name=mRNA_H-canaliculatus_M_contigs77815.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=39bp
REGPARAEVTFATTGYLARLLASNPRVLDSHTHLIIDEV
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mRNA from alignment at H-canaliculatus_M_contigs77815:391..507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77815.1.1 ID=mRNA_H-canaliculatus_M_contigs77815.1.1|Name=mRNA_H-canaliculatus_M_contigs77815.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77815:391..507- (Hapterophycus canaliculatus Oshoro7m male)
CGGGAGGGGCCCGCCAGGGCGGAGGTGACGTTCGCGACGACCGGGTACCT
GGCGAGGCTGCTCGCGAGCAACCCGAGGGTGCTGGACTCTCACACGCATC
TCATCATCGACGAGGTG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77815:391..507-

>mRNA_H-canaliculatus_M_contigs77815.1.1 ID=mRNA_H-canaliculatus_M_contigs77815.1.1|Name=mRNA_H-canaliculatus_M_contigs77815.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=117bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77815:391..507- (Hapterophycus canaliculatus Oshoro7m male)
CGGGAGGGGCCCGCCAGGGCGGAGGTGACGTTCGCGACGACCGGGTACCT
GGCGAGGCTGCTCGCGAGCAACCCGAGGGTGCTGGACTCTCACACGCATC
TCATCATCGACGAGGTG
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