mRNA_H-canaliculatus_M_contigs77518.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Shewanella sp. SR44-4 TaxID=2760935 RepID=A0A7W4FVK5_9GAMM) HSP 1 Score: 182 bits (462), Expect = 2.120e-56 Identity = 84/121 (69.42%), Postives = 100/121 (82.64%), Query Frame = 1
Query: 10 LRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRMLRETRQ 372
LR+LWR SHP P LP+T+SRPQ IAAKVIH TLY+LMI+VPVTGL T AHDVPVV++G IDLQDTF+F GH +F+ +RF+HAQAMH L+IGH+GAALVHQFW KD + RRML E +Q
Sbjct: 66 LRYLWRTSHPPPELPATLSRPQVIAAKVIHSTLYILMIVVPVTGLMTAVAHDVPVVVLGVIDLQDTFSFFGHDNFDLKRFIHAQAMHTFAGLIIGHIGAALVHQFWIKDGVFRRMLWEKKQ 186
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Conserved (hypothetical cytochrome B561 n=1 Tax=Azoarcus sp. (strain BH72) TaxID=418699 RepID=A1K9I0_AZOSB) HSP 1 Score: 82.8 bits (203), Expect = 2.660e-17 Identity = 50/122 (40.98%), Postives = 69/122 (56.56%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFA---FLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
L +LR WR +HP PALP+ + Q AA IH+ LYVLM+++P++G +A V G + L D A LG R + +H +L LV+GHVGAAL H F +DD++ RML
Sbjct: 63 LVLLRLGWRATHPAPALPAAMPAYQRAAAGAIHVLLYVLMLLIPISGWLMSSAKGFQTVWFGVLPLPDLVAKDATLGDRL----QTLHFALNMVLAGLVLGHVGAALKHHFIDRDDVLTRML 180
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Rudaea sp. TaxID=2136325 RepID=A0A8J7PX43_9GAMM) HSP 1 Score: 81.6 bits (200), Expect = 6.810e-17 Identity = 49/120 (40.83%), Postives = 72/120 (60.00%), Query Frame = 1
Query: 7 VLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRF---VHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
VLR+ WR++H PALP+ I Q A+ V+H TLY+LM++VP+TG A PV G L D F+G R +H + +LV L++GH+GAAL H+F +D++++RML
Sbjct: 63 VLRWAWRLTHRPPALPAAIPSWQQTASHVLHWTLYILMLVVPLTGYVHRLAGAHPVNFFG---LGDLPVFIGKNE-PLRLLTDTLHETLVWVLVILIVGHIGAALKHRFVDRDNVLQRML 178
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Alcaligenaceae bacterium TaxID=2021368 RepID=A0A847MLI3_9BURK) HSP 1 Score: 81.3 bits (199), Expect = 9.810e-17 Identity = 47/119 (39.50%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
L ++R WR+SHP P LP T+ +AA H LYVLMI +P++G +A PVV G + L D A + H + L+A++IGH+GAAL H F KD+++ RML
Sbjct: 58 LAIVRLAWRLSHPAPDLPETMGPISRLAAHAGHWVLYVLMIAIPLSGWLMSSAQGFPVVWFGVLPLPDLVAKNAELGAVLKD-AHVLLNYTLIAVLIGHIGAALQHHFIKKDNVLIRML 175
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: cytochrome (b n=1 Tax=Chromobacterium sp. ASV5 TaxID=2795109 RepID=UPI000B544B6F) HSP 1 Score: 80.9 bits (198), Expect = 1.290e-16 Identity = 48/119 (40.34%), Postives = 66/119 (55.46%), Query Frame = 1
Query: 10 LRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFA---FLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
LR WR H PALP+ + A + H LY+LMI++P++G +A VP V G + L D A LG R +FVH +L+A+V GHV AAL H + KDD+++RML
Sbjct: 60 LRLAWRAGHRPPALPAAMGALTRALAHLGHAALYLLMIVIPLSGWLMSSAKGVPTVYFGVLPLPDLIAPDPRLGERL----QFVHMTLNFLLIAVVAGHVAAALKHHLFDKDDVLKRML 174
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A7Y4WQU0_9PROT) HSP 1 Score: 80.5 bits (197), Expect = 2.160e-16 Identity = 47/125 (37.60%), Postives = 70/125 (56.00%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHD--VPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRMLRETR 369
LTV+R +WRV HP+PALP+ + Q A V H LY LM+ +P++G A ++ +P +L G +L + EF H ++++ L+I HV AAL H F +D ++RRML TR
Sbjct: 61 LTVVRIIWRVMHPVPALPAGMPAWQRWGAHVSHFGLYALMLAIPLSGWAAASSSSLGIPTMLFGAAELPSLPVGNDRDTHEFYEEAHELLGNLMILLLIVHVVAALKHHFVDRDTVLRRMLPFTR 185
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (B561 n=1 Tax=Methylotenera versatilis (strain 301) TaxID=666681 RepID=D7DP76_METV0) HSP 1 Score: 80.5 bits (197), Expect = 2.160e-16 Identity = 47/123 (38.21%), Postives = 66/123 (53.66%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRMLRETR 369
L ++R LWR +H P LP +SR +AA + H LY+LMI +P++G +A V G I + D R VH +L+ALVIGH GAA H F+ KDD++ RML + +
Sbjct: 64 LVMIRLLWRFTHSPPPLPMNMSRTAEVAAHIGHGLLYLLMIAIPLSGWLMSSAKGFQTVYFGIIPIPDLLTKNKELGNALRE-VHETLNFVLIALVIGHAGAAFKHHFFDKDDVLTRMLPKRK 185
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: cytochrome (b n=1 Tax=Novosphingobium profundi TaxID=1774954 RepID=UPI001BDB0B69) HSP 1 Score: 79.7 bits (195), Expect = 3.170e-16 Identity = 46/126 (36.51%), Postives = 73/126 (57.94%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDL-------QDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
L+++R WR++ PA P+T++ + +AAK++H+ LY+ M+ +PVTG +A P+ G D+ A +GH +H ++L+ALV+GHV AAL H F +DDI+RRML
Sbjct: 54 LSLVRLGWRLTWTAPAYPATMTPLEVLAAKLVHVVLYLFMLAMPVTGWIMASAGKYPLSWFGLFDMPKLPVAKDSVLAGIGHE-------MHEVGGYLLIALVLGHVLAALRHHFLVRDDILRRML 172
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b n=1 Tax=Paraburkholderia sp. TaxID=1926495 RepID=A0A522MRV8_9BURK) HSP 1 Score: 80.1 bits (196), Expect = 3.180e-16 Identity = 49/119 (41.18%), Postives = 67/119 (56.30%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
L LR LWR +H P LP Q AA ++H+ LYVLMI++P+TG +A +VPVV +G + L A F+ H + L ALV+ HVGAAL HQ+ +D ++ RML
Sbjct: 67 LATLRILWRATHRAPPLPLGTPAWQRAAAHLVHVLLYVLMIVIPITGYLFSSASNVPVVYLGIVPLPRLIAPDPTLKVVFKT-AHLVLNYTLAALVLAHVGAALKHQWVDRDRLLSRML 184
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Match: Cytochrome (b561 n=5 Tax=Paraburkholderia TaxID=1822464 RepID=A0A1H4DB83_9BURK) HSP 1 Score: 79.0 bits (193), Expect = 9.040e-16 Identity = 47/119 (39.50%), Postives = 69/119 (57.98%), Query Frame = 1
Query: 1 LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATVAAHDVPVVLIGGIDLQDTFAFLGHRSFEFRRFVHAQAMHILVALVIGHVGAALVHQFWFKDDIVRRML 357
L VLR LWR +H PALP ++ Q IAA+++H+ LYVLMI +P +G +A ++PVV +G + L A H + VH + L+ LV+ HV AL HQ +D ++ RM+
Sbjct: 68 LAVLRILWRATHAAPALPGGMAGWQRIAAQLVHVLLYVLMIAIPASGYLYSSASNIPVVYLGLVRLPLLIAPDPHLK-AILKVVHVTLNYGLLTLVVLHVAGALKHQLVDRDGLLSRMI 185 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77518.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs77518.1.1 >prot_H-canaliculatus_M_contigs77518.1.1 ID=prot_H-canaliculatus_M_contigs77518.1.1|Name=mRNA_H-canaliculatus_M_contigs77518.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=125bp LTVLRFLWRVSHPMPALPSTISRPQAIAAKVIHLTLYVLMIIVPVTGLATback to top mRNA from alignment at H-canaliculatus_M_contigs77518:136..510- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs77518.1.1 ID=mRNA_H-canaliculatus_M_contigs77518.1.1|Name=mRNA_H-canaliculatus_M_contigs77518.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=375bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77518:136..510- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77518:136..510- >mRNA_H-canaliculatus_M_contigs77518.1.1 ID=mRNA_H-canaliculatus_M_contigs77518.1.1|Name=mRNA_H-canaliculatus_M_contigs77518.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=375bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77518:136..510- (Hapterophycus canaliculatus Oshoro7m male)back to top |