mRNA_H-canaliculatus_M_contigs77468.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-canaliculatus_M_contigs77468.1.1
Unique Name	mRNA_H-canaliculatus_M_contigs77468.1.1
Type	mRNA
Organism	Hapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)

Homology

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT47_9PHAE)

HSP 1 Score: 132 bits (332), Expect = 4.380e-36
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1

Query:    1 MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            MVLELVIRRVLELKHELVKWNPPN D+RFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLD+AVPR
Sbjct:    1 MVLELVIRRVLELKHELVKWNPPNADMRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDVAVPR 65

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: Flagellar (associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR48_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 2.100e-34
Identity = 62/65 (95.38%), Postives = 64/65 (98.46%), Query Frame = 1

Query:    1 MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            MVLELVIRRVLELKHELVKWNPPN D+RFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLD+AVPR
Sbjct:   84 MVLELVIRRVLELKHELVKWNPPNADMRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDVAVPR 148

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z194_9STRA)

HSP 1 Score: 115 bits (287), Expect = 1.140e-29
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1

Query:    1 MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            MVLELV RRV+ELKH LVKWNPPN DVR PPP PE+AFPW+YVNLDDILVDLKL P+TLD+ VPR
Sbjct:   84 MVLELVTRRVIELKHALVKWNPPNGDVRLPPPMPEEAFPWEYVNLDDILVDLKLPPETLDVPVPR 148

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z665_9STRA)

HSP 1 Score: 115 bits (287), Expect = 2.500e-28
Identity = 53/65 (81.54%), Postives = 58/65 (89.23%), Query Frame = 1

Query:    1 MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            MVLELV RRV+ELKH LVKWNPPN DVR PPP PE+AFPW+YVNLDDILVDLKL P+TLD+ VPR
Sbjct:   84 MVLELVTRRVIELKHALVKWNPPNGDVRLPPPMPEEAFPWEYVNLDDILVDLKLPPETLDVPVPR 148

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UQB8_HETAK)

HSP 1 Score: 96.3 bits (238), Expect = 4.840e-24
Identity = 45/65 (69.23%), Postives = 53/65 (81.54%), Query Frame = 1

Query:    1 MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            MVLELVIRRVLELK  LVKWNPP+ ++ F PP     FPW+YVNLDD+LVDLKL P+TL++ VPR
Sbjct:   23 MVLELVIRRVLELKAALVKWNPPHPELAFQPPREPAPFPWEYVNLDDVLVDLKLPPETLEVPVPR 87

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: AAA (domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D3Y6_SAPPC)

HSP 1 Score: 92.8 bits (229), Expect = 1.730e-20
Identity = 43/64 (67.19%), Postives = 52/64 (81.25%), Query Frame = 1

Query:    4 VLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            ++ELV+ RV+ELKH+LVKWNPPN DVR     PEQ FPW+YVNLDD+LVDLKL P  L++ VPR
Sbjct:   84 IMELVMTRVVELKHDLVKWNPPNPDVRT---TPEQNFPWEYVNLDDLLVDLKLPPSLLEVPVPR 144

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: AAA (domain-containing protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C1R8_PYTIN)

HSP 1 Score: 92.4 bits (228), Expect = 2.370e-20
Identity = 43/64 (67.19%), Postives = 53/64 (82.81%), Query Frame = 1

Query:    4 VLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            VLE+V  R++ELKH+LVKWNPPN DV      PE++FPW+YVNLDDILVDLKL P+T++I VPR
Sbjct:   73 VLEVVTTRIVELKHDLVKWNPPNPDVAT---VPERSFPWEYVNLDDILVDLKLPPETIEIPVPR 133

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X6Y6_GLOUD)

HSP 1 Score: 91.7 bits (226), Expect = 4.410e-20
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 1

Query:    4 VLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            V+E+V  RV+ELKH+LVKWNPPN DV+     PE++FPW+YVNLDDILVDLKL P+TL++ VP+
Sbjct:   51 VMEVVTTRVVELKHDLVKWNPPNPDVQT---QPERSFPWEYVNLDDILVDLKLPPETLEVPVPK 111

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: IQ (and AAA domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5F7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.440e-20
Identity = 42/64 (65.62%), Postives = 52/64 (81.25%), Query Frame = 1

Query:    4 VLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            ++ELV+ RV+ELKH+LVKWNPPN DVR     PEQ FPW+YVNLDD+LVDLKL P  L++ VP+
Sbjct:  909 IMELVMTRVVELKHDLVKWNPPNPDVRT---TPEQNFPWEYVNLDDLLVDLKLPPSLLEVPVPK 969

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BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Match: WW (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8C7_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 4.440e-20
Identity = 42/64 (65.62%), Postives = 54/64 (84.38%), Query Frame = 1

Query:    4 VLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILVDLKLSPDTLDIAVPR 195
            V+E+V  R++ELKH+LVKWNPPN DV+     PE++FPW+YVNLDDILVDLKL P+TL+I VP+
Sbjct:   85 VMEVVTTRIVELKHDLVKWNPPNPDVQT---QPERSFPWEYVNLDDILVDLKLPPETLEIPVPK 145

The following BLAST results are available for this feature:

BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.

BLAST of mRNA_H-canaliculatus_M_contigs77468.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
Uncharacterized	4.380e-36	95.38	protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=...	[more]
Flagellar	2.100e-34	95.38	associated protein n=1 Tax=Ectocarpus siliculosus ...	[more]
Uncharacterized	1.140e-29	81.54	protein n=1 Tax=Tribonema minus TaxID=303371 RepID...	[more]
AAA	2.500e-28	81.54	domain-containing protein n=1 Tax=Tribonema minus ...	[more]
Hypothetical	4.840e-24	69.23	protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta...	[more]
AAA	1.730e-20	67.19	domain-containing protein n=3 Tax=Saprolegniaceae ...	[more]
AAA	2.370e-20	67.19	domain-containing protein n=2 Tax=Pythium insidios...	[more]
AAA	4.410e-20	65.63	domain-containing protein n=1 Tax=Globisporangium ...	[more]
IQ	4.440e-20	65.63	and AAA domain-containing protein n=1 Tax=Thrausto...	[more]
WW	4.440e-20	65.63	domain-containing protein n=1 Tax=Pythium brassicu...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-canaliculatus_M_contigs77468	contig	H-canaliculatus_M_contigs77468:305..499 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90	2022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male	2022-07-08

Properties


Property Name	Value
Stop	0
Start	1
Seed ortholog	2880.D8LR48
PFAMs	AAA
Model size	195
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	1
Evalue	3.44e-35
EggNOG OGs	COG0464@1\|root,KOG0740@2759\|Eukaryota
Description	Belongs to the AAA ATPase family
Cds size	195
COG category	O

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696854112.136525-CDS-H-canaliculatus_M_contigs77468:304..499	1696854112.136525-CDS-H-canaliculatus_M_contigs77468:304..499	Hapterophycus canaliculatus Oshoro7m male	CDS	H-canaliculatus_M_contigs77468 305..499 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-canaliculatus_M_contigs77468.1.1	prot_H-canaliculatus_M_contigs77468.1.1	Hapterophycus canaliculatus Oshoro7m male	polypeptide	H-canaliculatus_M_contigs77468 305..499 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-canaliculatus_M_contigs77468:305..499+
coding sequence from alignment at H-canaliculatus_M_contigs77468:305..499+

protein sequence of mRNA_H-canaliculatus_M_contigs77468.1.1

>prot_H-canaliculatus_M_contigs77468.1.1 ID=prot_H-canaliculatus_M_contigs77468.1.1|Name=mRNA_H-canaliculatus_M_contigs77468.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=65bp
MVLELVIRRVLELKHELVKWNPPNVDVRFPPPAPEQAFPWDYVNLDDILV
DLKLSPDTLDIAVPR

mRNA from alignment at H-canaliculatus_M_contigs77468:305..499+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-canaliculatus_M_contigs77468.1.1 ID=mRNA_H-canaliculatus_M_contigs77468.1.1|Name=mRNA_H-canaliculatus_M_contigs77468.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77468:305..499+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTCCTCGAGCTCGTGATCAGGAGAGTGCTGGAGCTGAAGCACGAGCT
CGTGAAGTGGAATCCGCCCAATGTGGACGTGCGCTTTCCGCCGCCGGCTC
CGGAGCAGGCGTTTCCGTGGGATTACGTGAACCTCGACGACATCCTCGTG
GATCTCAAGCTCTCGCCGGACACGCTCGACATCGCGGTGCCCAGG

Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77468:305..499+

>mRNA_H-canaliculatus_M_contigs77468.1.1 ID=mRNA_H-canaliculatus_M_contigs77468.1.1|Name=mRNA_H-canaliculatus_M_contigs77468.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=195bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77468:305..499+ (Hapterophycus canaliculatus Oshoro7m male)
ATGGTCCTCGAGCTCGTGATCAGGAGAGTGCTGGAGCTGAAGCACGAGCT
CGTGAAGTGGAATCCGCCCAATGTGGACGTGCGCTTTCCGCCGCCGGCTC
CGGAGCAGGCGTTTCCGTGGGATTACGTGAACCTCGACGACATCCTCGTG
GATCTCAAGCTCTCGCCGGACACGCTCGACATCGCGGTGCCCAGG