mRNA_H-canaliculatus_M_contigs7736.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs7736.1.1
Unique NamemRNA_H-canaliculatus_M_contigs7736.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs7736.1.1 vs.
Match: Putative (respiratory burst oxidase homolog protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF83_ECTSI)

HSP 1 Score: 87.0 bits (214), Expect = 4.950e-18
Identity = 39/66 (59.09%), Postives = 54/66 (81.82%), Query Frame = 1 
Query:   16 VICATSPLQLALLTGSRMSAGILYASLTISILSKCYATRAYVHRSWVGAVLNLEPSHDVHTCRSFV 213
            VICAT+  +  +LTGSR  AG+LYASL++S++SKCYA+RAY+H SW+G VL+ EP+HD+HT   F+
Sbjct:  154 VICATTLPEKVMLTGSRFLAGLLYASLSVSVVSKCYASRAYLHHSWLGTVLDFEPAHDLHTYFGFL 219
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BLAST of mRNA_H-canaliculatus_M_contigs7736.1.1 vs.
Match: FAD_binding_8 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEC1_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 2.340e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   22 CATSPLQLALLTGSRMSAGILYASLTISILSKCYATRAYVHRSWVGAVLNLEPSHDVHT 198
            C TS L   LLT SRMSAG L  S+   ILSKCYATR ++H SW+  V++ EP+H++HT
Sbjct:  262 CVTSALSKVLLTVSRMSAGALLPSMACCILSKCYATRYFLHHSWLAVVVSFEPAHELHT 320
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BLAST of mRNA_H-canaliculatus_M_contigs7736.1.1 vs.
Match: Putative (respiratory burst oxidase homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8C4_ECTSI)

HSP 1 Score: 70.5 bits (171), Expect = 3.230e-12
Identity = 33/59 (55.93%), Postives = 42/59 (71.19%), Query Frame = 1 
Query:   22 CATSPLQLALLTGSRMSAGILYASLTISILSKCYATRAYVHRSWVGAVLNLEPSHDVHT 198
            C TS L   LLT SRMSAG L  S+   ILSKCYATR ++H SW+  V++ EP+H++HT
Sbjct:   53 CVTSALSKVLLTVSRMSAGALLPSMACCILSKCYATRYFLHHSWLALVVSFEPAHELHT 111
[Close]
BLAST of mRNA_H-canaliculatus_M_contigs7736.1.1 vs.
Match: Putative (respiratory burst oxidase homolog protein C-ter n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8D1_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 4.300e-8
Identity = 28/73 (38.36%), Postives = 47/73 (64.38%), Query Frame = 1 
Query:   43 LALLTGSRMSAGILYASLTISILSKCYATRAYVHRSWVGAVLNLEPSHDVHTCRSFVAAGAILLSSLSSITKI 261
            +AL++ +R++AG L  S+T+ I+SKCYATR  +H SW+  +++ EPSH  H    +    A+L S++ S   +
Sbjct:    1 MALMSVARLTAGALIPSITVCIVSKCYATRYVLHYSWLAHIVDFEPSHTPH---KYFGILAMLCSAIHSACHV 70
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs7736.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
Putative4.950e-1859.09respiratory burst oxidase homolog protein n=2 Tax=... [more]
FAD_binding_82.340e-1255.93domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Putative3.230e-1255.93respiratory burst oxidase homolog n=1 Tax=Ectocarp... [more]
Putative4.300e-838.36respiratory burst oxidase homolog protein C-ter n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs7736contigH-canaliculatus_M_contigs7736:4583..4849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G8C4
PFAMsAn_peroxidase,Cyt-b5,DOMON,EF-hand_1,FAD_binding_6,FAD_binding_8,Ferric_reduct,NAD_binding_6,ZZ
Model size267
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal peptide
Exons1
Evalue5.3e-13
EggNOG OGsKOG0039@1|root,KOG0039@2759|Eukaryota
Descriptionoxidoreductase activity, acting on NAD(P)H, oxygen as acceptor
Cds size267
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.1148973-CDS-H-canaliculatus_M_contigs7736:4582..48491696854111.1148973-CDS-H-canaliculatus_M_contigs7736:4582..4849Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs7736 4583..4849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs7736.1.1prot_H-canaliculatus_M_contigs7736.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs7736 4583..4849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs7736.1.1

>prot_H-canaliculatus_M_contigs7736.1.1 ID=prot_H-canaliculatus_M_contigs7736.1.1|Name=mRNA_H-canaliculatus_M_contigs7736.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=89bp
CLIKSVICATSPLQLALLTGSRMSAGILYASLTISILSKCYATRAYVHRS
WVGAVLNLEPSHDVHTCRSFVAAGAILLSSLSSITKIP*
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mRNA from alignment at H-canaliculatus_M_contigs7736:4583..4849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs7736.1.1 ID=mRNA_H-canaliculatus_M_contigs7736.1.1|Name=mRNA_H-canaliculatus_M_contigs7736.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=267bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7736:4583..4849+ (Hapterophycus canaliculatus Oshoro7m male)
TGCCTTATCAAAAGCGTCATATGCGCGACGTCTCCGTTGCAGCTAGCTCT
GTTGACCGGGTCGCGCATGTCTGCCGGCATCCTCTACGCGAGTCTAACAA
TTTCCATCCTGTCCAAGTGCTACGCGACGCGCGCATACGTCCACCGCTCC
TGGGTGGGCGCTGTGCTAAATTTGGAGCCCAGCCACGATGTGCACACATG
TAGGTCGTTTGTTGCTGCGGGTGCGATACTGCTGAGTAGCTTGAGCTCGA
TCACCAAAATACCGTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs7736:4583..4849+

>mRNA_H-canaliculatus_M_contigs7736.1.1 ID=mRNA_H-canaliculatus_M_contigs7736.1.1|Name=mRNA_H-canaliculatus_M_contigs7736.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=267bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs7736:4583..4849+ (Hapterophycus canaliculatus Oshoro7m male)
TGCCTTATCAAAAGCGTCATATGCGCGACGTCTCCGTTGCAGCTAGCTCT
GTTGACCGGGTCGCGCATGTCTGCCGGCATCCTCTACGCGAGTCTAACAA
TTTCCATCCTGTCCAAGTGCTACGCGACGCGCGCATACGTCCACCGCTCC
TGGGTGGGCGCTGTGCTAAATTTGGAGCCCAGCCACGATGTGCACACATG
TAGGTCGTTTGTTGCTGCGGGTGCGATACTGCTGAGTAGCTTGAGCTCGA
TCACCAAAATACCGTAG
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