mRNA_H-canaliculatus_M_contigs77355.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs77355.1.1
Unique NamemRNA_H-canaliculatus_M_contigs77355.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Asp_protease (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L9H3_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.730e-14
Identity = 34/44 (77.27%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:    7 ISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVN 138
            +SAACAERCGL +RIDK +AG+AVGVGFARILGRIHDA +R  N
Sbjct:    1 MSAACAERCGLASRIDKSYAGRAVGVGFARILGRIHDASIRIGN 44
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Peptidase (aspartic, catalytic UBA-like n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQW7_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 4.840e-14
Identity = 36/46 (78.26%), Postives = 41/46 (89.13%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVN 138
            TV+SAACAERCGL +RIDK +AG+AVGVGFARILGRIHDA +R  N
Sbjct:  234 TVMSAACAERCGLASRIDKSYAGRAVGVGFARILGRIHDASIRIGN 279
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Aste57867_20624 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LHE6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.710e-9
Identity = 27/47 (57.45%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVNG 141
            T++S+ CAERCG+   +D+RFAGQAVGVG A+I+GR+H A ++  NG
Sbjct:  236 TIMSSNCAERCGIMRLVDRRFAGQAVGVGTAKIIGRVHMASLKIGNG 282
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4K2_PYTOL)

HSP 1 Score: 59.3 bits (142), Expect = 5.070e-9
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVN 138
            T++S++CAERCG+   +DKRFAGQAVGVG A+I+GR+H A ++  N
Sbjct:  234 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMAPLKIGN 279
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: DDI1 (2 protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8DPB6_PHYNI)

HSP 1 Score: 59.3 bits (142), Expect = 5.100e-9
Identity = 27/46 (58.70%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVN 138
            T++S++CAERCG+   +DKRFAGQAVGVG A+I+GR+H A ++  N
Sbjct:  234 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMAPLKIGN 279
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: J (domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLB6_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 6.970e-9
Identity = 26/40 (65.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDA 120
            T++S++CAERCG+   +DKRFAGQAVGVG A+I+GR+H A
Sbjct:  219 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMA 258
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WH90_GLOUD)

HSP 1 Score: 58.5 bits (140), Expect = 9.470e-9
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVR 129
            T++S+ CAERCG+   +DKRFAGQAVGVG A+I+GR+H A ++
Sbjct:  220 TIMSSNCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMASLK 262
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V770_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 9.490e-9
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVR 129
            T++S+ CAERCG+   +DKRFAGQAVGVG A+I+GR+H A ++
Sbjct:  234 TIMSSNCAERCGIMRLVDKRFAGQAVGVGTAKIIGRVHMAALK 276
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: Ubiquitin-like (domain-containing protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2S3S5_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.170e-8
Identity = 27/46 (58.70%), Postives = 37/46 (80.43%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVN 138
            T++S++CAERCG+   +DKRFAGQAVGVG A I+GR+H A ++  N
Sbjct:  187 TIMSSSCAERCGIMRLVDKRFAGQAVGVGTATIIGRVHMAHLKIGN 232
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BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Match: DNA (damage-inducible protein 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A676_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 1.770e-8
Identity = 26/46 (56.52%), Postives = 38/46 (82.61%), Query Frame = 1 
Query:    1 TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVN 138
            T++S++CAERCG+   +D+R+AGQAVGVG A+ILGR+H A ++  N
Sbjct:  240 TIMSSSCAERCGIMRLVDRRYAGQAVGVGTAKILGRVHMAELKIGN 285
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77355.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Asp_protease1.730e-1477.27domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Peptidase4.840e-1478.26aspartic, catalytic UBA-like n=1 Tax=Ectocarpus si... [more]
Aste57867_206243.710e-957.45protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
Uncharacterized5.070e-958.70protein n=1 Tax=Pythium oligandrum TaxID=41045 Rep... [more]
DDI15.100e-958.702 protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0... [more]
J6.970e-965.00domain-containing protein n=1 Tax=Pythium brassicu... [more]
Uncharacterized9.470e-960.47protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized9.490e-960.47protein n=1 Tax=Peronospora effusa TaxID=542832 Re... [more]
Ubiquitin-like1.170e-858.70domain-containing protein n=3 Tax=Phytophthora ker... [more]
DNA1.770e-856.52damage-inducible protein 1 n=1 Tax=Thraustotheca c... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs77355contigH-canaliculatus_M_contigs77355:214..357 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LQW7
PFAMsAsp_protease,DUF2781,UBA,ubiquitin
Model size144
Max annot lvl2759|Eukaryota
KEGG koko:K11885
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0012505,GO:0016020,GO:0016021,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0042175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0098827
Exons1
Evalue7.93e-15
EggNOG OGsKOG0012@1|root,KOG0012@2759|Eukaryota
Descriptionaspartic-type endopeptidase activity
Cds size144
COG categoryO
BRITEko00000,ko03051
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854111.0463152-CDS-H-canaliculatus_M_contigs77355:213..3571696854111.0463152-CDS-H-canaliculatus_M_contigs77355:213..357Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs77355 214..357 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs77355.1.1prot_H-canaliculatus_M_contigs77355.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs77355 214..357 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs77355.1.1

>prot_H-canaliculatus_M_contigs77355.1.1 ID=prot_H-canaliculatus_M_contigs77355.1.1|Name=mRNA_H-canaliculatus_M_contigs77355.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=48bp
TVISAACAERCGLTARIDKRFAGQAVGVGFARILGRIHDAGVRWVNG*
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mRNA from alignment at H-canaliculatus_M_contigs77355:214..357-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs77355.1.1 ID=mRNA_H-canaliculatus_M_contigs77355.1.1|Name=mRNA_H-canaliculatus_M_contigs77355.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77355:214..357- (Hapterophycus canaliculatus Oshoro7m male)
ACGGTGATATCGGCGGCGTGCGCCGAGCGCTGCGGGCTCACGGCGCGCAT
CGACAAGCGCTTCGCAGGACAGGCGGTGGGGGTAGGCTTCGCGAGGATAC
TCGGACGAATCCACGACGCCGGCGTTCGGTGGGTGAATGGCTAG
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77355:214..357-

>mRNA_H-canaliculatus_M_contigs77355.1.1 ID=mRNA_H-canaliculatus_M_contigs77355.1.1|Name=mRNA_H-canaliculatus_M_contigs77355.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=144bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77355:214..357- (Hapterophycus canaliculatus Oshoro7m male)
ACGGTGATATCGGCGGCGTGCGCCGAGCGCTGCGGGCTCACGGCGCGCAT
CGACAAGCGCTTCGCAGGACAGGCGGTGGGGGTAGGCTTCGCGAGGATAC
TCGGACGAATCCACGACGCCGGCGTTCGGTGGGTGAATGGCTAG
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