mRNA_H-canaliculatus_M_contigs77193.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male
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Overview
Homology
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHG5_ECTSI) HSP 1 Score: 137 bits (346), Expect = 1.330e-36 Identity = 67/79 (84.81%), Postives = 73/79 (92.41%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
L+QETALFR+RLEELSPAEM KFIPE GLFFEVV+ +RKAALRSKLLS+P AP +EFDRTTYYRIPFWQA DLIGKRQV
Sbjct: 121 LTQETALFRHRLEELSPAEMSKFIPEHGLFFEVVTPERKAALRSKLLSIPAAPVMEFDRTTYYRIPFWQASDLIGKRQV 199
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS26_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 2.520e-21 Identity = 50/79 (63.29%), Postives = 58/79 (73.42%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
L+QE+ALFRYRLE LS + FI GL FEVVS D KAA RS+LL+ PGA EF+R T+YRIPF QA DLIG+R V
Sbjct: 118 LTQESALFRYRLESLSSTGIISFIQSNGLAFEVVSADDKAARRSRLLTAPGATAAEFERCTFYRIPFAQATDLIGQRLV 196
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSI2_9ARCH) HSP 1 Score: 63.5 bits (153), Expect = 1.220e-10 Identity = 30/79 (37.97%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
++QE ALF++RL+EL+ E +F+ + GL ++ V K L KL+ + G F T +Y++PF QA+ L+G R V
Sbjct: 39 ITQECALFKHRLDELADEERAQFMYDNGLQYDRVDPSEKRRLEDKLIDIGGVTTASFPATHFYKVPFAQALALLGSRAV 117
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H234_9STRA) HSP 1 Score: 64.7 bits (156), Expect = 2.720e-10 Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
L QE +L +YRL+ LS E F+ G+ F+ VS + K + + KL+ + G + +TT+Y++PF QA+ L+ R V
Sbjct: 119 LGQECSLMKYRLDSLSDEERASFMLSNGMDFDPVSNEEKNSRKDKLIDLAGVTSVSIIKTTFYKVPFQQALSLVSSRSV 197
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6J1_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.290e-9 Identity = 32/79 (40.51%), Postives = 45/79 (56.96%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
L+QE ALFR+RL L +F+ E GL FE V + A + L + + TYYR+PF +A+DLIG+R+V
Sbjct: 115 LTQECALFRHRLSRLRGDGFARFLREHGLRFEEVPDSERDARVTSLARIKNYENVPAQTATYYRVPFLEAIDLIGRREV 193
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H4Z7_9STRA) HSP 1 Score: 60.1 bits (144), Expect = 3.460e-9 Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRS-KLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQVSCR 246
L+QE+ LFRYRLE+L E+ F+ GL +E V L+ + + PG L T Y+++PF QA DL+G+RQV R
Sbjct: 102 LAQESVLFRYRLEKLKSTEVIAFMQLNGLNYEPVEDVDPTLLKELQAVGTPGQALLGSHETMYFKVPFAQASDLVGRRQVLLR 184
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YER9_AURAN) HSP 1 Score: 58.9 bits (141), Expect = 2.930e-8 Identity = 36/79 (45.57%), Postives = 48/79 (60.76%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQV 237
L+QE ALF++RL LS ++G F+ GL FE VS D RS LS G + YYR+PF +A+DLIG+R+V
Sbjct: 117 LTQECALFKHRLGTLSGPQLGLFLAANGLKFEEVS-DADVDARSVALSKISKTG-DGGAAGYYRVPFVEAIDLIGRREV 193
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A507F984_9FUNG) HSP 1 Score: 58.5 bits (140), Expect = 4.020e-8 Identity = 29/83 (34.94%), Postives = 46/83 (55.42%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDRTTYYRIPFWQAVDLIGKRQVSCRA 249
+ QETALF YR ++ E +F+ L V++ + K L ++L + G E + +YR+PF Q +DL+G+RQV A
Sbjct: 131 IKQETALFMYRYKQEEQVERDRFLKHVQLDMSVITPEEKKNLETELRATHGLSTDELSQINFYRVPFEQVLDLVGRRQVYLHA 213
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: DNA (primase large subunit n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y793_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 1.390e-7 Identity = 33/88 (37.50%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 1 LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGAPGLEFDR-----TTYYRIPFWQAVDLIGKRQVSCRA 249
LSQE+ALFRYRL+++S E F+ GL ++ + +SKL +V A L+ T Y+++PF +A+DL+G R+V A
Sbjct: 119 LSQESALFRYRLDKMSREEKLHFMKSNGLSYQEATPKELEQRQSKLKAVRDAGVLDIKLRLAPLTAYFKVPFTEALDLVGTRKVYIEA 206
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZF14_9STRA) HSP 1 Score: 55.8 bits (133), Expect = 3.580e-7 Identity = 34/82 (41.46%), Postives = 51/82 (62.20%), Query Frame = 1
Query: 1 LSQETALFRYRLEEL--SPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPGA---PGLEFDRTTYYRIPFWQAVDLIGKR 231
L+QE ALFR+RL+++ S + F+ + L F+ VS K LR LLS+P + PG E + +Y++PF QA+DL+ KR
Sbjct: 143 LTQECALFRFRLDKILTSSSAFRAFLVKADLHFDRVSDLEKERLREFLLSIPNSNVSPG-ELSVSVFYQVPFVQALDLVAKR 223 The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs77193.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-canaliculatus_M_contigs77193.1.1 >prot_H-canaliculatus_M_contigs77193.1.1 ID=prot_H-canaliculatus_M_contigs77193.1.1|Name=mRNA_H-canaliculatus_M_contigs77193.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=83bp LSQETALFRYRLEELSPAEMGKFIPEQGLFFEVVSGDRKAALRSKLLSVPback to top mRNA from alignment at H-canaliculatus_M_contigs77193:216..464- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-canaliculatus_M_contigs77193.1.1 ID=mRNA_H-canaliculatus_M_contigs77193.1.1|Name=mRNA_H-canaliculatus_M_contigs77193.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=249bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77193:216..464- (Hapterophycus canaliculatus Oshoro7m male)back to top Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs77193:216..464- >mRNA_H-canaliculatus_M_contigs77193.1.1 ID=mRNA_H-canaliculatus_M_contigs77193.1.1|Name=mRNA_H-canaliculatus_M_contigs77193.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=249bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs77193:216..464- (Hapterophycus canaliculatus Oshoro7m male)back to top |