mRNA_H-canaliculatus_M_contigs76817.1.1 (mRNA) Hapterophycus canaliculatus Oshoro7m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-canaliculatus_M_contigs76817.1.1
Unique NamemRNA_H-canaliculatus_M_contigs76817.1.1
TypemRNA
OrganismHapterophycus canaliculatus Oshoro7m male (Hapterophycus canaliculatus Oshoro7m male)
Homology
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BLAST of mRNA_H-canaliculatus_M_contigs76817.1.1 vs.
Match: CHAT (domain-containing protein n=1 Tax=Granulosicoccus sp. TaxID=1943584 RepID=A0A848U743_9GAMM)

HSP 1 Score: 107 bits (268), Expect = 3.610e-24
Identity = 60/153 (39.22%), Postives = 92/153 (60.13%), Query Frame = 1 
Query:    1 TTKVVMEARQTFKKAESIIDKILDIKPNQDRWAIKGSMHKRWAMIEAKTQQLVQLKKMVHAYKSGYEFGIAMKSDSAFYPLQNLVAANIVLAWSVSPKSKDKLSKKQMKSLFTELKSFMQQYTVGDTDFWTMVQKPDFQLLEVLNRGNIGKEE 459
            TT+    A +  ++AE IID +LDI  +Q+R+AIKG +HKR  M+  K  Q   L+KM  AY   +E  +   S +AFYPLQN  AANI L W    K K++L ++ ++  F +L  ++++  + D DFWT  Q+PD +LL+ +   N+  +E
Sbjct: 1627 TTESKAMASKELQEAEKIIDSLLDINGSQERYAIKGGVHKRRIMLADKRGQPAHLRKMAEAYGRAHELAMESNSSNAFYPLQNHAAANIALLWCAGGK-KEQL-RQSVEDDFRQLDQYLEKADLRDADFWTACQEPDRRLLQAMYERNLSHDE 1777
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BLAST of mRNA_H-canaliculatus_M_contigs76817.1.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nitrospirales bacterium TaxID=2358460 RepID=A0A7W1UHY7_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 6.190e-12
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1 
Query:   25 RQTFKKAESIIDKILDIKPNQDRWAIKGSMHKRWAMIEA-KTQQLVQLKKMVHAYKSGYEFGIAMKSDSAFYPLQNLVAANIVLAWSVSPKSKDKLSKKQ-----MKSLFTELKSFMQQYTVGDTDFWTMVQKPDFQLLEVLNRGNIGKEEEEDI 471
            ++ F  AE+I+  +L I+  Q+R+A+KG +HK  AM+ + K +Q   L +M   Y  GY+ G A +   A+YPL N +AA IVL+W   PK +     K      +     EL ++ +        FW M    D +LLE L    +  +++++I
Sbjct:  197 KELFNDAENILAGLLTIQQTQERYALKGKLHKGKAMLLSNKLEQRKALLEMKRCYDEGYDIGKAAERKDAYYPLGNRLAAEIVLSWD-QPKGRQTRRGKTKGADPLAEGLAELSTYAKDLIGKGQSFWDMSLTSDQKLLEALYAQRLTAKDQKEI 350
The following BLAST results are available for this feature:
BLAST of mRNA_H-canaliculatus_M_contigs76817.1.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
CHAT3.610e-2439.22domain-containing protein n=1 Tax=Granulosicoccus ... [more]
Uncharacterized6.190e-1231.61protein n=1 Tax=Nitrospirales bacterium TaxID=2358... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-canaliculatus_M_contigs76817contigH-canaliculatus_M_contigs76817:7..480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Hapterophycus canaliculatus Oshoro7m male vs UniRef902022-09-19
OGS1.0 of Hapterophycus canaliculatus Oshoro7m male2022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog1297865.APJD01000032_gene1657
PFAMsCHAT,LCAT
Model size474
Max annot lvl28211|Alphaproteobacteria
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.37e-07
EggNOG OGsCOG1075@1|root,COG4995@1|root,COG1075@2|Bacteria,COG4995@2|Bacteria,1MUIQ@1224|Proteobacteria,2U1J0@28211|Alphaproteobacteria,3K177@41294|Bradyrhizobiaceae
DescriptionCHAT domain
Cds size459
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.3375006-CDS-H-canaliculatus_M_contigs76817:6..4651696854106.3375006-CDS-H-canaliculatus_M_contigs76817:6..465Hapterophycus canaliculatus Oshoro7m maleCDSH-canaliculatus_M_contigs76817 7..465 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696854106.3560576-UTR-H-canaliculatus_M_contigs76817:465..4801696854106.3560576-UTR-H-canaliculatus_M_contigs76817:465..480Hapterophycus canaliculatus Oshoro7m maleUTRH-canaliculatus_M_contigs76817 466..480 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-canaliculatus_M_contigs76817.1.1prot_H-canaliculatus_M_contigs76817.1.1Hapterophycus canaliculatus Oshoro7m malepolypeptideH-canaliculatus_M_contigs76817 7..465 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-canaliculatus_M_contigs76817.1.1

>prot_H-canaliculatus_M_contigs76817.1.1 ID=prot_H-canaliculatus_M_contigs76817.1.1|Name=mRNA_H-canaliculatus_M_contigs76817.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=polypeptide|length=153bp
MEARQTFKKAESIIDKILDIKPNQDRWAIKGSMHKRWAMIEAKTQQLVQL
KKMVHAYKSGYEFGIAMKSDSAFYPLQNLVAANIVLAWSVSPKSKDKLSK
KQMKSLFTELKSFMQQYTVGDTDFWTMVQKPDFQLLEVLNRGNIGKEEEE
DII
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mRNA from alignment at H-canaliculatus_M_contigs76817:7..480-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-canaliculatus_M_contigs76817.1.1 ID=mRNA_H-canaliculatus_M_contigs76817.1.1|Name=mRNA_H-canaliculatus_M_contigs76817.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=mRNA|length=474bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76817:7..480- (Hapterophycus canaliculatus Oshoro7m male)
ACCACTAAAGTTGTAATGGAAGCGAGGCAGACCTTCAAGAAGGCTGAATC
GATTATTGACAAAATCCTGGACATAAAACCGAATCAGGATAGATGGGCGA
TTAAGGGTAGTATGCATAAGCGTTGGGCAATGATTGAAGCCAAGACTCAA
CAACTGGTTCAATTGAAAAAAATGGTTCACGCTTACAAAAGTGGTTACGA
ATTTGGTATTGCAATGAAATCGGATTCTGCGTTTTATCCACTTCAAAATT
TAGTGGCAGCAAATATCGTGCTAGCGTGGAGTGTGAGTCCTAAGAGTAAG
GATAAATTATCAAAAAAACAAATGAAGTCTCTTTTCACGGAACTGAAAAG
TTTCATGCAGCAGTACACTGTTGGCGACACTGATTTCTGGACCATGGTTC
AAAAGCCGGACTTTCAGTTACTTGAGGTGTTAAATAGAGGCAATATCGGT
AAAGAGGAAGAAGAGGATATTATA
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Coding sequence (CDS) from alignment at H-canaliculatus_M_contigs76817:7..480-

>mRNA_H-canaliculatus_M_contigs76817.1.1 ID=mRNA_H-canaliculatus_M_contigs76817.1.1|Name=mRNA_H-canaliculatus_M_contigs76817.1.1|organism=Hapterophycus canaliculatus Oshoro7m male|type=CDS|length=459bp|location=Sequence derived from alignment at H-canaliculatus_M_contigs76817:7..480- (Hapterophycus canaliculatus Oshoro7m male)
ATGGAAGCGAGGCAGACCTTCAAGAAGGCTGAATCGATTATTGACAAAAT
CCTGGACATAAAACCGAATCAGGATAGATGGGCGATTAAGGGTAGTATGC
ATAAGCGTTGGGCAATGATTGAAGCCAAGACTCAACAACTGGTTCAATTG
AAAAAAATGGTTCACGCTTACAAAAGTGGTTACGAATTTGGTATTGCAAT
GAAATCGGATTCTGCGTTTTATCCACTTCAAAATTTAGTGGCAGCAAATA
TCGTGCTAGCGTGGAGTGTGAGTCCTAAGAGTAAGGATAAATTATCAAAA
AAACAAATGAAGTCTCTTTTCACGGAACTGAAAAGTTTCATGCAGCAGTA
CACTGTTGGCGACACTGATTTCTGGACCATGGTTCAAAAGCCGGACTTTC
AGTTACTTGAGGTGTTAAATAGAGGCAATATCGGTAAAGAGGAAGAAGAG
GATATTATA
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